mRNA_P-littoralis_Contig942.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig942.8.1
Unique NamemRNA_P-littoralis_Contig942.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig942.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig942contigP-littoralis_Contig942:84807..88569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size440
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.5767195-CDS-P-littoralis_Contig942:84806..849111680791857.5767195-CDS-P-littoralis_Contig942:84806..84911Pylaiella littoralis U1_48CDSP-littoralis_Contig942 84807..84911 +
1680791857.5955577-CDS-P-littoralis_Contig942:88234..885671680791857.5955577-CDS-P-littoralis_Contig942:88234..88567Pylaiella littoralis U1_48CDSP-littoralis_Contig942 88235..88567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig942.8.1prot_P-littoralis_Contig942.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig942 84807..88567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig942.8.1

>prot_P-littoralis_Contig942.8.1 ID=prot_P-littoralis_Contig942.8.1|Name=mRNA_P-littoralis_Contig942.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
VAVVFQPFKGHRREATTWERPDTIQPRVSPTAPHSVVLRFPMSSPAGSDA
DVHGVTRAEFELQVQAGENERSHLSAEVADLHNSLEAKLATVLTTLQQVQ
QMRQGGAHGGTQVAGHAGGGAGAAAVLAGGAFGGAPLSHGGMAGFG
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mRNA from alignment at P-littoralis_Contig942:84807..88569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig942.8.1 ID=mRNA_P-littoralis_Contig942.8.1|Name=mRNA_P-littoralis_Contig942.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3763bp|location=Sequence derived from alignment at P-littoralis_Contig942:84807..88569+ (Pylaiella littoralis U1_48)
GTTGCTGTTGTTTTTCAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGAC
GTGGGAGCGGCCGGACACCATCCAGCCGCGAGTCAGCCCTACTGCGCCAC
ACTCGGTACGACGAGCGACGCATTTAACATTGTTAGGACTGAAAGAAAAA
TCGCCTGTTGTTGTGTGGTTGTGCGCGGATACGCGCTTCGAATGCGGATA
GGCACGGAGTATGTATGGCTAGGGTTAGGGCTGAGCCTAAGGAGGCAGAT
GCACATTTACCACCTGGTGGGCACACAGTAGAGCCCCACAATACACGCGC
TGCTGGTGCAGCGTAGGCGCACGACGCGCTACTGCGCAATACGTGCGTAC
GTCAACACAAGGTATCATCTCGTTACACATTTGACATGAGACCTGCCAGG
AGGTAACGATACACAGCAGTTGATGTTCGCACATCGTATAAATGTAGACA
GCCGTCGCACGCCGGTCATCTAAAAACCGGGCGAACACATACCAGAGATC
ACTGACACACGCACTGTGGCACAGCGCAGGGACGCTGCACGCGTTCTGAC
ACTAACGGGCGCGCGTTGCCATGGATCTATTATATCGTCTCACGTTTGTC
AAGAGACATGTCATACGGTACCACGATGCGATCATATGAGTTATTTGAGA
CTGTCGCGCGTCACAGAGCGAGTTGCCTTCATACCAACGCAGGTCGCCAT
TCGATAGACGCACACCCGTAATGAGGCTGCCGGCGCAGCACAGGTGCAGA
TAGCCACAACGTAGTCCACTATCGCGCATTTCGCACTTGGTACGTACGAG
GTACGGGATGCAGGTACCGTACTGAGGTCACCGGGACATGATCGAACGAA
ACAAAAACGAAATGCGGGTCACCCAAATCCAACTTAGATCCGTGGCACAG
AGACCGCCGCCCACACAATGGCGGAGAACCGAAGTTGCAGGCGTCATTCA
ACGCAGAGCCAACTATACTGTTACCATGAGCTACCACTGCTGTCTGATTG
TTGCGCGATCCACGATATCATGTCGTGAGATCGCACACACAACGGTCAGA
GAGGGCACACAGCAGCAGTGGTAGTCATATATATCGTTGCACATATACAC
GACGACTCGACAGTCAACGTCGTGAGGCCAACTACATTAACAATATACCA
AAGTATATGATACTTCGACTAGAGTGTGTGAACCGGAGTTGCAGGCGTCA
TGCGACGCAGGGCAAACTATGCTGCTACCATGCGCCACCACTGCTGTCTG
ATTGTTGCGCGATCCACAACTTCCATGTCGTGAGTTCGCGCACACAACGG
TCAGGGAGGGCACGCAGTAGCAGTAGTAGTCGCTTATATAGTTGCACATA
TACACGACGATTTGTCAGTCAATGCCGTGAGGTCAACTACATTTATTAAC
AATATACCGACATATGTGATACTCCAACTAGCGGGTGTAGTCGACGTGGT
TGACCACACAGGAGAGAAAAAATTCAGCAGTCTGAATCGGAAAATAATAC
AAAGAGACGAGAGAAACGAACCCGGAGGTTTCGAGTACAACACATGTATT
ATAGGGTGTAGTCGACGTAGTCGACCACACAGAGTAAATTCAGCAAAGCT
GAAATCAAGATATACCAAAGTATATGATACTCCGACTCGAGGGTGTAGCC
GACGTAGTCGACCACACGGGAGAGGGGAAAAACAAAATTCAGCGGGTCTG
AACCGAAAGATAATACCAAAAGACGAGAGAAACAAACCCGGGGGTTTCGA
GTACAACGCATGTATTATAGGATGTAGTCGACGCAGTTGACTATAGGGTG
TAGTCGACGTACTCGACCACAcagGGTAAATTCAGCGAAGCAGAAATAAA
AGATTTACCAAAGTATATAATACTCCGACTCgaGGGTGCAGCCGACGTAG
TCGACCACACGGGAGAGGGGACAAACAAAAATTCAGCGGGTCTGAACCGA
AAGATAATACAAAGAGACGAGAGAAACAAACCCGGGGGTTTCGAGTACAA
CGCATGTATTATAGGGTGTAGTCGACGCAGTCGACCACACAGGGAAATTC
AGCAAGGCTGAAACGGAAGATAATACAAAAGGaAAAACGAACCCGGCGGT
TCTCGCATACAACGCATGTATTATCCCGCCCGCATAACACACTGGTGATA
TCAGGCGATGGCACTTCCAGCGTAGTGTCAATAAGGGCGAGTTCCTCGCA
GGTGCGAGAAGCAGGTTTTGCCCACATCCTCGCGTCCCGTAGTTTTGCCA
CGGTAACCGCGAGAGTAACATAACGCGTGCGATATACAGCGAAGCTTGAA
TCCGCGTGTCTTCGCATTACGGAAAACCCCGCGTTGTTGTCGCGGTGCAC
TCCGCACAATTACGATGTCAAGAGGCCGGCGCCTCGACCGAAATAATGCC
ACCAATGTCGTTTGTTTGTTTTTTCGCAAGGGTGGAAAATAGGCATGGCC
CATAAAATTCGCGTAGCACCATCTGCTGTCGCTGTCATACGTAGCCATGA
TCATTGGCCGGCGCCGAATTCTCCATAGTACCAGCAGGGCCGCGTTTCTC
ACAAGTGTGGAAAACAGGATCGGCACATAGTTCTACGTACCACGAGAACG
AAGACAAAAATACATATTGCACCGAAATTAGGGTCTGTCAAAAGCAGGAA
CAGCACCGTTTACTCGAAGTTCCCACCGGCGTGGCGATAGAGTAGACAGG
ACAACCGATTCGGCATGGAGTAACCGGCCCCGCGGCGCGGAGACACGCGC
ACGGGATAAGTAAGTTGTCAGTTGCAGCTATGGACCCACTCTTATCTCAC
GATTGCGAACCCACCTTTCTGGTTTTAATTTGGCGATGAATTTGTATTTT
CCCAAGAGGCTTTTTTTCTTTTCGGAGCCAACATTACTGTCAGAGAGAAG
AGTCGCGACCATGAACTTTGAACACTACAGCAGGCACGTATACACGGAAT
CGTACCGCGCACACCTATCGCACATATGTCACGCCGTAGGCACTGCTGGG
GCAGATACGGTGCGATAACAAGGCCGCACCCAGCCTGTATACAGCAGTTG
CACGAAAACCGCACGTTAGTACGTACGAAGTGCCCAGGGTGATCCGGGGT
AGGTAGCGGGGCATGCGCACTTATCCACAAATTCCCATGTGAAATATACC
GGCGCATGCTGATCGGGCTACGGGGGTAAATACAAGCACCGGCGGGGTGT
GAGTGATCGATATCACTCACGAAGAAATATAGTGACGGGGTGTGGGTGCA
ACATATGCCACCCACGGTTAAAGGCGTCGAACGTGCCGGAGCACGAGGTT
GTCACGCGTTAACCAGGCCCGCTGCTATGTTCCACCTCCAATCATTTGCT
GACCCGGCCCCTCCGCGGTACCCTGCCACCccgCCCCCCCCCTGGGCACG
ATCACCGGATTCATCGAATATATTCCAGGTGGTACTTCGGTTTCCTATGT
CCTCGCCAGCCGGCTCCGATGCCGACGTCCACGGGGTGACGAGGGCCGAG
TTCGAGCTGCAGGTGCAAGCCGGAGAGAACGAGCGCTCTCACCTGTCGGC
GGAGGTGGCAGACCTCCACAACTCGCTCGAGGCCAAGCTGGCCACGGTCC
TTACCACTCTGCAGCAGGTGCAGCAGATGCGTCAAGGCGGGGCCCACGGC
GGAACCCAGGTAGCCGGTCACGCCGGGGGGGGGGCAGGCGCGGCAGCGGT
GCTAGCGGGCGGCGCGTTCGGGGGCGCCCCGCTATCTCACGGGGGCATGG
CGGGGTTCGGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig942:84807..88569+

>mRNA_P-littoralis_Contig942.8.1 ID=mRNA_P-littoralis_Contig942.8.1|Name=mRNA_P-littoralis_Contig942.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig942:84807..88569+ (Pylaiella littoralis U1_48)
GTTGCTGTTGTTTTTCAGCCGTTCAAGGGCCATCGGCGCGAGGCTACGAC
GTGGGAGCGGCCGGACACCATCCAGCCGCGAGTCAGCCCTACTGCGCCAC
ACTCGGTGGTACTTCGGTTTCCTATGTCCTCGCCAGCCGGCTCCGATGCC
GACGTCCACGGGGTGACGAGGGCCGAGTTCGAGCTGCAGGTGCAAGCCGG
AGAGAACGAGCGCTCTCACCTGTCGGCGGAGGTGGCAGACCTCCACAACT
CGCTCGAGGCCAAGCTGGCCACGGTCCTTACCACTCTGCAGCAGGTGCAG
CAGATGCGTCAAGGCGGGGCCCACGGCGGAACCCAGGTAGCCGGTCACGC
CGGGGGGGGGGCAGGCGCGGCAGCGGTGCTAGCGGGCGGCGCGTTCGGGG
GCGCCCCGCTATCTCACGGGGGCATGGCGGGGTTCGGC
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