mRNA_P-littoralis_Contig941.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.32.1
Unique NamemRNA_P-littoralis_Contig941.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:63613..64173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.352879-UTR-P-littoralis_Contig941:63612..637061680791857.352879-UTR-P-littoralis_Contig941:63612..63706Pylaiella littoralis U1_48UTRP-littoralis_Contig941 63613..63706 +
1680791857.387924-UTR-P-littoralis_Contig941:64109..641731680791857.387924-UTR-P-littoralis_Contig941:64109..64173Pylaiella littoralis U1_48UTRP-littoralis_Contig941 64110..64173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.3635926-CDS-P-littoralis_Contig941:63706..638921680791857.3635926-CDS-P-littoralis_Contig941:63706..63892Pylaiella littoralis U1_48CDSP-littoralis_Contig941 63707..63892 +
1680791857.3756902-CDS-P-littoralis_Contig941:64088..641091680791857.3756902-CDS-P-littoralis_Contig941:64088..64109Pylaiella littoralis U1_48CDSP-littoralis_Contig941 64089..64109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.32.1prot_P-littoralis_Contig941.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 63707..64109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.32.1

>prot_P-littoralis_Contig941.32.1 ID=prot_P-littoralis_Contig941.32.1|Name=mRNA_P-littoralis_Contig941.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MRGKSGHVRAEKRNVFKRKLRDYVLLKKVVVDGDGTIFRATDDEIAEAIG
GDPKIPSQWTAETHTVTK*
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mRNA from alignment at P-littoralis_Contig941:63613..64173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.32.1 ID=mRNA_P-littoralis_Contig941.32.1|Name=mRNA_P-littoralis_Contig941.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig941:63613..64173+ (Pylaiella littoralis U1_48)
CTCCGACGGCGTTGTGTTCCGCAACACCAAGATAGGCGATCTGCAGCTTA
GTACGCCGAGGCCCGTCCCCACCCTGAGGGAGACGGTCGGCCCCATGAGG
GGCAAGTCCGGTCATGTCAGGGCGGAAAAGAGGAACGTGTTCAAGAGGAA
GCTTAGGGACTACGTTCTTCTGAAGAAGGTGGTGGTCGACGGAGACGGCA
CCATCTTCCGCGCCACCGACGACGAGATCGCCGAGGCGATCGGCGGCGAC
CCCAAGATCCCCTCGCAGTGGACCGCGGAAACGTACATCGACGTCGTGAA
GCAGATGGTCTGGGAGAAGTCACGGCGTTAGGATTGCTTTGCCGTAGCTA
AATTCTGTCCTCGAGTTTTGGTGTGTCGACGGGCTGTTGCTCACAACAGG
AAGGGGGGTAGGCTGGTAGTATTAAAAAAAGGAAAAGTAATTTTCATGTA
AAAGCCTTAGTTGTGACCGCGACGCCACGCACACCGTCACTAAATAAGCA
ACCTGGTACGACACGCCTTGTTTTTAGGTGCCGGCTTCCTTTCCTTCATT
TTTGGCCGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig941:63613..64173+

>mRNA_P-littoralis_Contig941.32.1 ID=mRNA_P-littoralis_Contig941.32.1|Name=mRNA_P-littoralis_Contig941.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig941:63613..64173+ (Pylaiella littoralis U1_48)
ATGAGGGGCAAGTCCGGTCATGTCAGGGCGGAAAAGAGGAACGTGTTCAA
GAGGAAGCTTAGGGACTACGTTCTTCTGAAGAAGGTGGTGGTCGACGGAG
ACGGCACCATCTTCCGCGCCACCGACGACGAGATCGCCGAGGCGATCGGC
GGCGACCCCAAGATCCCCTCGCAGTGGACCGCGGAAACGCACACCGTCAC
TAAATAA
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