mRNA_P-littoralis_Contig941.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.27.1
Unique NamemRNA_P-littoralis_Contig941.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.410e-23
Identity = 88/186 (47.31%), Postives = 105/186 (56.45%), Query Frame = 1 
Query:  280 GEGASGGRGQAKATNLDLLATAACSAGAMASDGGSAGGSRSGG-----IHDHEVS------DVSQELAAAQVTGTQPGEAVAAPASAQAVVET-----------PVPAREALVKGDGAVQAAGEAGAGEVTPVSSALAVVAQEPGEAQRLQKSHGSHDLLGHTPAATPAPVAAGEEEQGTVVRESL 771
            G   +GG   A ++NL+LLAT       +  + GS GG  SGG      HD  V       D+SQELA  QVTGTQP EA+AAPASAQ VVET           P+PA EALV G   VQAAGEAGAG+V P  S    +AQ+ GEA R+QKS GSHD+L          V  GE EQG  + ++L
Sbjct:  503 GTAGAGGVEMASSSNLNLLATVC-----LLEENGSCGGIESGGGGDGANHDETVPIGDCAPDLSQELAVTQVTGTQPDEALAAPASAQVVVETVTPGQDTERQQPLPASEALVAGGVEVQAAGEAGAGDVMPTLSGSVGLAQQTGEAPRVQKSRGSHDVLDRI------RVDGGEVEQGEAISDAL 677
[Close]
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.850e-20
Identity = 85/177 (48.02%), Postives = 97/177 (54.80%), Query Frame = 1 
Query:  295 GGRGQAKATNLDLLATAACSAGAMASDGGSAGGSRSGGIHDHEVS------DVSQELAAAQVTGTQPGEAVAAP-ASAQAVVET-----------PVPAREALVKGDGAVQAAGEAGAGEVTPVSSALAVVAQEPGEAQRLQKSHGSHDLLGHTPAATPAPVAAGEEEQGTVVRESL 771
            GG   A ++NL LLAT    A   +  G  +GG   G  HD  V       D SQELA  QVTGTQP EAVAA  ASAQAVVET           P+P REALV G   VQ  GEAGAG+V   SS    VAQ+ GEA R+Q+S GSHDLL          V  GE EQG  + ++L
Sbjct:  556 GGLEMASSSNLQLLATVCVRAENESYGGIESGGGGDGANHDETVPIEDGAPDFSQELAVTQVTGTQPDEAVAAASASAQAVVETATPVQDTEREQPLPPREALVAGGVEVQVVGEAGAGDVMRTSSGSVGVAQQTGEAPRVQESRGSHDLLDQI------RVYGGEVEQGEAISDAL 726
[Close]
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.490e-20
Identity = 73/135 (54.07%), Postives = 84/135 (62.22%), Query Frame = 1 
Query:  310 AKATNLDLLATAACSAGAMASDGGSAGGSRSGGIHDHEVS------DVSQELAAAQVTGTQPGEAVAAPASAQAV-VETPVPAREALVKGDGAVQAAGEAGAGEVTPVSSALAVVAQEPGEAQRLQKSHGSHDLL 693
            A ++NL+LLAT     G  +  G  +GG   G   D  V       D+SQELAA +VT TQP E VAAPASAQ    E P PA +ALV G  AVQAAGEAGA +V P S   A VA +PGEAQR+Q S GSHDLL
Sbjct:    2 ASSSNLNLLATVCLLEGNGSCGGIESGGGGDGANRDETVPIEDGALDLSQELAATRVTSTQPDEPVAAPASAQDTECEQPSPASDALVAGGVAVQAAGEAGADDVMPTSRGSAGVAIQPGEAQRVQNSRGSHDLL 136
[Close]
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.150e-19
Identity = 71/129 (55.04%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:  421 EVSDVSQELAAAQVTGTQPGEAVAAP-ASAQAVVET-----------PVPAREALVKGDGAVQAAGEAGAGEVTPVSSALAVVAQEPGEAQRLQKSHGSHDLLGHTPAATPAPVAAGEEEQGTVVRESL 771
            +  D+SQELAA QVTGTQP EAVAA  AS QAVVET           P+PA EALV GD  VQAAGEAGA +V   SS    VAQ+ GEA R+Q+S GSHDLL          V  GE EQG  V ++L
Sbjct:   35 DAPDLSQELAATQVTGTQPDEAVAAASASPQAVVETATPGQDTEHEQPLPASEALVAGDVGVQAAGEAGAADVMLTSSGSVGVAQQTGEAPRVQESRGSHDLLDQI------RVYGGEVEQGEAVSDAL 157
[Close]
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.140e-6
Identity = 40/56 (71.43%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  424 VSDVSQELAAAQVTGTQPGEAVAAPASAQAVV-----------ETPVPAREALVKG 558
            V D+SQELAA QVTGTQP EAVAAPASAQAVV           E PVPAREALVKG
Sbjct: 2003 VPDLSQELAATQVTGTQPDEAVAAPASAQAVVKAVTPVTETEHEQPVPAREALVKG 2058
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KUR8_9PHAE1.410e-2347.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7R7_9PHAE1.850e-2048.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFH6_ECTSI4.490e-2054.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA48_9PHAE7.150e-1955.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTT9_ECTSI1.140e-671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:54369..55923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFH6
Model size1108
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.36e-21
EggNOG OGs2BXB7@1|root,2S2EZ@2759|Eukaryota
Cds size1107
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.2305424-CDS-P-littoralis_Contig941:54368..544161680791857.2305424-CDS-P-littoralis_Contig941:54368..54416Pylaiella littoralis U1_48CDSP-littoralis_Contig941 54369..54416 -
1680791857.242244-CDS-P-littoralis_Contig941:54610..551441680791857.242244-CDS-P-littoralis_Contig941:54610..55144Pylaiella littoralis U1_48CDSP-littoralis_Contig941 54611..55144 -
1680791857.254038-CDS-P-littoralis_Contig941:55177..552791680791857.254038-CDS-P-littoralis_Contig941:55177..55279Pylaiella littoralis U1_48CDSP-littoralis_Contig941 55178..55279 -
1680791857.265263-CDS-P-littoralis_Contig941:55500..559231680791857.265263-CDS-P-littoralis_Contig941:55500..55923Pylaiella littoralis U1_48CDSP-littoralis_Contig941 55501..55923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.27.1prot_P-littoralis_Contig941.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 54369..55923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.27.1

>prot_P-littoralis_Contig941.27.1 ID=prot_P-littoralis_Contig941.27.1|Name=mRNA_P-littoralis_Contig941.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=369bp
SVVDDTVPSFAATGGEGDEREEVTTTVAQLAAARVEKEGEGERPESAVNT
AAVAGEVGRGERAPATDTFRAPTVAVPPATSPAPPPVAPQGVGGEGASGG
RGQAKATNLDLLATAACSAGAMASDGGSAGGSRSGGIHDHEVSDVSQELA
AAQVTGTQPGEAVAAPASAQAVVETPVPAREALVKGDGAVQAAGEAGAGE
VTPVSSALAVVAQEPGEAQRLQKSHGSHDLLGHTPAATPAPVAAGEEEQG
TVVRESLGSVVSTAPATPAPAAAREKQEEVVSEALAAAPQGVECFSRSGG
GEGTGGGRGQASAATLDLLATAACLGTGAVASEGGSAGESGSGSENEGGD
QHEAAGEADAGEVMPTSSE
back to top

mRNA from alignment at P-littoralis_Contig941:54369..55923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.27.1 ID=mRNA_P-littoralis_Contig941.27.1|Name=mRNA_P-littoralis_Contig941.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-littoralis_Contig941:54369..55923- (Pylaiella littoralis U1_48)
TCGGTGGTAGACGACACAGTGCCATCATTTGCAGCGACGGGGGGTGAGGG
GGACGAGAGAGAAGAGGTAACGACGACGGTGGCACAATTAGCAGCAGCGC
GCGTAGAGAAGGAGGGGGAAGGAGAAAGACCAGAGTCGGCGGTCAACACA
GCAGCGGTAGCGGGCGAGGTGGGGCGAGGGGAACGTGCGCCGGCGACAGA
CACATTTCGGGCGCCAACAGTAGCCGTGCCACCAGCAACATCCCCCGCAC
CACCACCAGTGGCACCACAAGGCGTTGGCGGAGAAGGCGCCAGCGGAGGG
AGAGGGCAGGCAAAGGCGACAAATCTAGACCTCCTTGCGACCGCCGCCTG
TTCGGCCGGAGCGATGGCAAGCGATGGTGGGAGCGCTGGTGGAAGCAGGA
GCGGAGGTATTCATGACCACGAGGTGGGTGTTGGCGATTCCAAAGCGCAT
GTGTCTGAAACTTGAGTTGTGGAGGGATCGAGAGAGGTGGCGGGCGATGG
AGCCAATCATGCATAAAAAAGAGGGGGGATTGTTACACCCTCCCGTGTTA
GACACTACGACAGGCACCGCAGCCAAACACGTACAACGATACATTTGACG
CTGATTGAAAACTGATACCCGCTCCACCCCTGTGGTTTCGAAAGGTTTCG
GACGTTTCCCAAGAGCTCGCGGCCGCACAGGTGACTGGCACTCAGCCAGG
CGAGGCAGTGGCGGCACCTGCATCTGCGCAGGCCGTGGTCGAGACGGTGA
CGCCAGGACAAGACACGGAGCGCCAGCAGCCTGTTCCGGCCAGAGAGGCC
TTGGTGAAAGGTGACGGGGCGGTGCAGGCAGCAGGAGAAGCCGGTGCAGG
CGAAGTGACGCCAGTGTCTAGCGCGTTGGCTGTGGTAGCACAAGAGCCGG
GTGAAGCACAGCGACTACAGAAAAGCCACGGCTCGCACGACTTGCTCGGG
CATACACCAGCAGCAACGCCAGCACCAGTAGCGGCGGGCGAAGAGGAGCA
GGGGACAGTAGTACGCGAGTCACTAGGGTCGGTGGTAAGCACAGCACCAG
CAACACCAGCGCCAGCAGCTGCGCGCGAGAAGCAGGAGGAAGTTGTAAGC
GAGGCACTAGCAGCGGCGCCACAAGGAGTTGAATGCTTTTCGAGAAGCGG
CGGCGGCGAAGGCACCGGCGGAGGGAGAGGTCAGGCCAGCGCGGCAACTC
TAGACCTCCTCGCGACCGCCGCCTGTTTGGGCACCGGAGCGGTGGCAAGC
GAGGGCGGGAGTGCTGGTGAGAGCGGGAGCGGGAGCGAGAACGAAGGTGG
TGATCAACATGAGGTGGGTATTGGCGATTCCAAACTTGACTTTACGCAAG
AAAAAGGGGATGGTCGCTATTGCTGAAAGAACATGTCGACCCTAGTTGAT
ACCGCCACACACCGCAGAGATGCATGTTTGTTCGAACGTTTGTATCGACT
GCTTCCCCCTGTCACCGGCCCACTCTTTTAACCACTTGTTCCTACGTGGC
GGTGTAGGCAGCAGGAGAGGCCGATGCCGGCGAAGTGATGCCGACGTCTA
GCGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig941:54369..55923-

>mRNA_P-littoralis_Contig941.27.1 ID=mRNA_P-littoralis_Contig941.27.1|Name=mRNA_P-littoralis_Contig941.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1107bp|location=Sequence derived from alignment at P-littoralis_Contig941:54369..55923- (Pylaiella littoralis U1_48)
TCGGTGGTAGACGACACAGTGCCATCATTTGCAGCGACGGGGGGTGAGGG
GGACGAGAGAGAAGAGGTAACGACGACGGTGGCACAATTAGCAGCAGCGC
GCGTAGAGAAGGAGGGGGAAGGAGAAAGACCAGAGTCGGCGGTCAACACA
GCAGCGGTAGCGGGCGAGGTGGGGCGAGGGGAACGTGCGCCGGCGACAGA
CACATTTCGGGCGCCAACAGTAGCCGTGCCACCAGCAACATCCCCCGCAC
CACCACCAGTGGCACCACAAGGCGTTGGCGGAGAAGGCGCCAGCGGAGGG
AGAGGGCAGGCAAAGGCGACAAATCTAGACCTCCTTGCGACCGCCGCCTG
TTCGGCCGGAGCGATGGCAAGCGATGGTGGGAGCGCTGGTGGAAGCAGGA
GCGGAGGTATTCATGACCACGAGGTTTCGGACGTTTCCCAAGAGCTCGCG
GCCGCACAGGTGACTGGCACTCAGCCAGGCGAGGCAGTGGCGGCACCTGC
ATCTGCGCAGGCCGTGGTCGAGACGCCTGTTCCGGCCAGAGAGGCCTTGG
TGAAAGGTGACGGGGCGGTGCAGGCAGCAGGAGAAGCCGGTGCAGGCGAA
GTGACGCCAGTGTCTAGCGCGTTGGCTGTGGTAGCACAAGAGCCGGGTGA
AGCACAGCGACTACAGAAAAGCCACGGCTCGCACGACTTGCTCGGGCATA
CACCAGCAGCAACGCCAGCACCAGTAGCGGCGGGCGAAGAGGAGCAGGGG
ACAGTAGTACGCGAGTCACTAGGGTCGGTGGTAAGCACAGCACCAGCAAC
ACCAGCGCCAGCAGCTGCGCGCGAGAAGCAGGAGGAAGTTGTAAGCGAGG
CACTAGCAGCGGCGCCACAAGGAGTTGAATGCTTTTCGAGAAGCGGCGGC
GGCGAAGGCACCGGCGGAGGGAGAGGTCAGGCCAGCGCGGCAACTCTAGA
CCTCCTCGCGACCGCCGCCTGTTTGGGCACCGGAGCGGTGGCAAGCGAGG
GCGGGAGTGCTGGTGAGAGCGGGAGCGGGAGCGAGAACGAAGGTGGTGAT
CAACATGAGGCAGCAGGAGAGGCCGATGCCGGCGAAGTGATGCCGACGTC
TAGCGAG
back to top