mRNA_P-littoralis_Contig941.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.31.1
Unique NamemRNA_P-littoralis_Contig941.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Match: A0A6H5JA48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA48_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.820e-31
Identity = 81/104 (77.88%), Postives = 83/104 (79.81%), Query Frame = 3 
Query:  762 NLSRELAATPVTGTQPDEAVAA-HASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIR 1049
            +LS+ELAAT VTGTQPDEAVAA  AS QAVVET       E EQPLPASE LVAGDV VQAAGEAGA DVM TS GS GVAQ  GEAPRVQ SRGSHDLLDQIR
Sbjct:   38 DLSQELAATQVTGTQPDEAVAAASASPQAVVETATPGQDTEHEQPLPASEALVAGDVGVQAAGEAGAADVMLTSSGSVGVAQQTGEAPRVQESRGSHDLLDQIR 141
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BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Match: D8LFH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.290e-30
Identity = 76/97 (78.35%), Postives = 81/97 (83.51%), Query Frame = 3 
Query:  762 NLSRELAATPVTGTQPDEAVAAHASAQAVVETEREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIRA 1052
            +LS+ELAAT VT TQPDE VAA ASAQ   +TE EQP PAS+ LVAG VAVQAAGEAGA DVMPTS GSAGVA  PGEA RVQNSRGSHDLLD+IRA
Sbjct:   48 DLSQELAATRVTSTQPDEPVAAPASAQ---DTECEQPSPASDALVAGGVAVQAAGEAGADDVMPTSRGSAGVAIQPGEAQRVQNSRGSHDLLDEIRA 141
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BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Match: A0A6H5KUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.290e-30
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 3 
Query:  762 NLSRELAATPVTGTQPDEAVAAHASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIR 1049
            +LS+ELA T VTGTQPDEA+AA ASAQ VVET       ER+QPLPASE LVAG V VQAAGEAGAGDVMPT  GS G+AQ  GEAPRVQ SRGSHD+LD+IR
Sbjct:  559 DLSQELAVTQVTGTQPDEALAAPASAQVVVETVTPGQDTERQQPLPASEALVAGGVEVQAAGEAGAGDVMPTLSGSVGLAQQTGEAPRVQKSRGSHDVLDRIR 661
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BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Match: A0A6H5K7R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.200e-27
Identity = 77/104 (74.04%), Postives = 79/104 (75.96%), Query Frame = 3 
Query:  762 NLSRELAATPVTGTQPDEAVAA-HASAQAVVET-------EREQPLPASEVLVAGDVAVQAAGEAGAGDVMPTSCGSAGVAQWPGEAPRVQNSRGSHDLLDQIR 1049
            + S+ELA T VTGTQPDEAVAA  ASAQAVVET       EREQPLP  E LVAG V VQ  GEAGAGDVM TS GS GVAQ  GEAPRVQ SRGSHDLLDQIR
Sbjct:  607 DFSQELAVTQVTGTQPDEAVAAASASAQAVVETATPVQDTEREQPLPPREALVAGGVEVQVVGEAGAGDVMRTSSGSVGVAQQTGEAPRVQESRGSHDLLDQIR 710
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BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.280e-6
Identity = 38/54 (70.37%), Postives = 41/54 (75.93%), Query Frame = 3 
Query:  762 NLSRELAATPVTGTQPDEAVAAHASAQAVV-------ETEREQPLPASEVLVAG 902
            +LS+ELAAT VTGTQPDEAVAA ASAQAVV       ETE EQP+PA E LV G
Sbjct: 2005 DLSQELAATQVTGTQPDEAVAAPASAQAVVKAVTPVTETEHEQPVPAREALVKG 2058
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JA48_9PHAE1.820e-3177.88Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LFH6_ECTSI7.290e-3078.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUR8_9PHAE9.290e-3073.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7R7_9PHAE1.200e-2774.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI2.280e-670.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:59706..61320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1052
Hectar predicted targeting categoryother localisation
Exons2
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.049465-UTR-P-littoralis_Contig941:59705..599971680791857.049465-UTR-P-littoralis_Contig941:59705..59997Pylaiella littoralis U1_48UTRP-littoralis_Contig941 59706..59997 -
1680791857.0622754-UTR-P-littoralis_Contig941:60560..606731680791857.0622754-UTR-P-littoralis_Contig941:60560..60673Pylaiella littoralis U1_48UTRP-littoralis_Contig941 60561..60673 -
1680791857.0837712-UTR-P-littoralis_Contig941:61201..613201680791857.0837712-UTR-P-littoralis_Contig941:61201..61320Pylaiella littoralis U1_48UTRP-littoralis_Contig941 61202..61320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791857.0741134-CDS-P-littoralis_Contig941:60673..612011680791857.0741134-CDS-P-littoralis_Contig941:60673..61201Pylaiella littoralis U1_48CDSP-littoralis_Contig941 60674..61201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.31.1prot_P-littoralis_Contig941.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 60674..61201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.31.1

>prot_P-littoralis_Contig941.31.1 ID=prot_P-littoralis_Contig941.31.1|Name=mRNA_P-littoralis_Contig941.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MQLSAPVEDKGATSAATLPVPSAVATAAAPSSPRESGGCSTLNTPMVEHK
GTAAAEEVLQPTIEGPTAEESVLQTVVEDPAAAAVVHPAAEESAAAEKAH
AAIEESTAADEVHPAVDERSTAEENLRQPAVDESTAAEKEVQLPVPEEEL
EPASAPGARGTLSSSSGEGGGGGRG*
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mRNA from alignment at P-littoralis_Contig941:59706..61320-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.31.1 ID=mRNA_P-littoralis_Contig941.31.1|Name=mRNA_P-littoralis_Contig941.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1615bp|location=Sequence derived from alignment at P-littoralis_Contig941:59706..61320- (Pylaiella littoralis U1_48)
GAGAAAATTTAGGGCAGCCGTCGGTAGAACACATTTCGGTAGCAGAAAAC
GTGATGCAGCCGGAAGAAGAGGAGGGCACAGCAGCAGAGAATTTAGTCTA
GCAGGTGGTAGAGAAAGTAATGCAGCTGTCGGCGCCGGTGGAAGACAAGG
GGGCCACATCAGCGGCAACATTACCAGTACCATCAGCGGTAGCGACGGCG
GCAGCGCCCAGCAGCCCTCGCGAGAGTGGCGGGTGCAGCACACTGAACAC
CCCTATGGTCGAGCACAAGGGCACGGCAGCAGCGGAGGAAGTACTGCAGC
CGACGATAGAGGGTCCAACCGCAGAGGAGAGTGTATTGCAGACAGTGGTG
GAGGATCCAGCTGCAGCTGCCGTAGTGCACCCGGCGGCAGAAGAGTCCGC
AGCAGCTGAGAAAGCGCACGCGGCGATAGAGGAGTCCACAGCAGCTGATG
AAGTGCACCCGGCAGTAGACGAGAGGAGCACGGCAGAAGAAAATTTAAGG
CAGCCGGCGGTAGATGAGTCCACCGCAGCGGAGAAAGAAGTGCAGCTGCC
GGTGCCGGAGGAAGAGCTGGAGCCCGCGTCAGCACCGGGAGCCCGGGGCA
CTTTGAGCAGCAGCAGCGGCGAAGGCGGTGGTGGAGGCAGAGGCTAGGCC
AGCGCATTTAATCTAGATCTCCTCGCGACCGCCGCCTGTTTGAGCGCCGG
AGCTGTGGCAAGCAGGGGCGGGAGTGGTGGTCGTGGGAGCGAGAGCGAGA
GCGAGAACGGAAGTGGCGATGGTGCCAGGTTCGAGGTGGGTGATGGTGAT
TTCGAAGCGCGTTGTGTCTGAAACACGACTTTATGACAAAAGAGAGGGAT
GGTTGCAACAAAAAAGGTCTGTGCGACCCGAGTTGATCTGTCCATATTGT
AGTATGAAAGCGAATTTGGGTTGGAGGCTGGCTTTCTTAAAAAAGACAAA
CACACAGCCATAGACCAGTCAAGGTCTGGGTTTTAAACGGTTTACCCGTC
AAAAGAGCCCTCGGCCCGGAGGCCTGGTTAAAAAGCACAAAAAATCAAGA
ACTGTGACAGAGGGTCGGTGGACGATGGCGTCCGCAAAGGCTGACATGAG
AACACAAAGCCATGCTGATCGTCGAGCTCTCGTCCCTGTTACAGACAAAC
GGACTACTGTTTTCGGCCCACAACGGACAGTTCGTTGGAATGACGGCGAT
GCTGGAAAGAAGACCGATGCCCCTGCGTCCTTCGCTTTTCCCTCTCCACT
CTTTCGACCACTCGTTTTACTAGGAGGCGAGACCTTCGGTGCCGATGCAC
GTGGTGGTCGAAGACGGTGCGCCGAACCTGTCGCGAGAGCTCGCGGCCAC
ACCGGTGACTGGCACTCAGCCAGACGAGGCAGTGGCGGCGCATGCATCTG
CACAGGCCGTGGTCGAGACAGAGCGTGAGCAGCCTCTTCCGGCGAGTGAG
GTCTTGGTGGCAGGTGACGTGGCGGTGCAAGCAGCGGGAGAGGCCGGTGC
CGGCGACGTGATGCCGACGTCTTGCGGGTCGGCGGGTGTGGCACAATGGC
CGGGTGAAGCTCCGCGAGTACAGAACAGCCGGGGCTCGCACGACTTGCTC
GACCAAATCCGGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig941:59706..61320-

>mRNA_P-littoralis_Contig941.31.1 ID=mRNA_P-littoralis_Contig941.31.1|Name=mRNA_P-littoralis_Contig941.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig941:59706..61320- (Pylaiella littoralis U1_48)
ATGCAGCTGTCGGCGCCGGTGGAAGACAAGGGGGCCACATCAGCGGCAAC
ATTACCAGTACCATCAGCGGTAGCGACGGCGGCAGCGCCCAGCAGCCCTC
GCGAGAGTGGCGGGTGCAGCACACTGAACACCCCTATGGTCGAGCACAAG
GGCACGGCAGCAGCGGAGGAAGTACTGCAGCCGACGATAGAGGGTCCAAC
CGCAGAGGAGAGTGTATTGCAGACAGTGGTGGAGGATCCAGCTGCAGCTG
CCGTAGTGCACCCGGCGGCAGAAGAGTCCGCAGCAGCTGAGAAAGCGCAC
GCGGCGATAGAGGAGTCCACAGCAGCTGATGAAGTGCACCCGGCAGTAGA
CGAGAGGAGCACGGCAGAAGAAAATTTAAGGCAGCCGGCGGTAGATGAGT
CCACCGCAGCGGAGAAAGAAGTGCAGCTGCCGGTGCCGGAGGAAGAGCTG
GAGCCCGCGTCAGCACCGGGAGCCCGGGGCACTTTGAGCAGCAGCAGCGG
CGAAGGCGGTGGTGGAGGCAGAGGCTAG
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