mRNA_P-littoralis_Contig941.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.5.1
Unique NamemRNA_P-littoralis_Contig941.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:8072..11199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791856.7357635-CDS-P-littoralis_Contig941:8071..82161680791856.7357635-CDS-P-littoralis_Contig941:8071..8216Pylaiella littoralis U1_48CDSP-littoralis_Contig941 8072..8216 -
1680791856.753873-CDS-P-littoralis_Contig941:11092..111781680791856.753873-CDS-P-littoralis_Contig941:11092..11178Pylaiella littoralis U1_48CDSP-littoralis_Contig941 11093..11178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791856.7689037-UTR-P-littoralis_Contig941:11178..111991680791856.7689037-UTR-P-littoralis_Contig941:11178..11199Pylaiella littoralis U1_48UTRP-littoralis_Contig941 11179..11199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.5.1prot_P-littoralis_Contig941.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 8072..11178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.5.1

>prot_P-littoralis_Contig941.5.1 ID=prot_P-littoralis_Contig941.5.1|Name=mRNA_P-littoralis_Contig941.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MMGDSVHWIWRRRDSVMDVPHPRHSAFGLLLLVSAFGPCFDTLHLLWCLF
PARSIIQRAFPTSACVDEVPSSPHNP*
back to top

mRNA from alignment at P-littoralis_Contig941:8072..11199-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.5.1 ID=mRNA_P-littoralis_Contig941.5.1|Name=mRNA_P-littoralis_Contig941.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3128bp|location=Sequence derived from alignment at P-littoralis_Contig941:8072..11199- (Pylaiella littoralis U1_48)
GTTTCCCCGGAGTATCTTGGCATGATGGGAGATTCGGTTCATTGGATTTG
GCGACGGAGAGATTCCGTGATGGATGTACCACATCCACGTCACTCTGCTT
TTGGTCTCTGCGTTTGGTCCCTGCTTTGATACTCTTCATCTTCTCTGGTG
TTTGTTTCCTGCGAGGTCAATAATACAACGAGCGTTTCCTACCTCGGCCT
GTGTGGCCGAGGTGCCCTCATCACCTCATCACCACACAACCCCTAGCTAG
AGCCTAGCCCCAGTATCGAACACGCTAGCGAAGACACGTCGTCCACGATA
TGCGGGTCTAGCTTTGCTAGTTGGGGATTCATTTCGCAGTGAGGGCGACG
GAACTATGGAGATCAAGATGATCGTGAGCAGCTTGGACAAGAAGACCACA
CCACAGCAGCAGCCGATGTTCAAGCAGCAACAGCAGCAACAGCAGCACGT
CGCCTACTAGGGTCCTAGACCCGCTCAGGCACGTGACGACATGCTCATGC
TTTTCATCTGCCCGGCTTTGACTTGGACTTGTTGTTTTGTGTTTTCAGAA
GCTGTGATTCTGGATTGAGATTTGGTCTTGCCCTTTGGTTCATGTTCTGA
CCTTTTGTCACTGATTGTTATTTTTCGGTCATGACTGCTGTATGATACGA
TCTGACATGACATGTGTGTCGTAAACGAAGTAGGAATTGGGGTGTTCAAG
TGAATGAGGATACGAAGAAAGTGTGTGTGTGATGGTTTTCAAGCCAACAA
AATCACTGCGGTGGGGATCTGCCGCCATTGGAACGGTTGCCAGTATACGA
GCAAAACTGACAGAAACGAGAATGTAGTGGGAATTTCATCGTACCGTGAG
AGATCATAGCAAGTTTGTAAGAGGGTGGGTGAAAATTGACGGTAGAGAAC
TGCAGTTTACCGAAACAGGACCTCAGCTAAAAGCGAGACTTCACTTTATA
TTTACAGAAGAGTCGGTCGCGGGTTAAATCCCCGCCATGCACTATTGCGC
TTATTACATTCCACCAGAGCAAAACTGGGAACTCGGGGAAGCAAAAGCAG
CAAAGGTATGACCTCTCTGCATCAGATAAACTGGGAACTGAGTAGACGAG
TCACCGTAATACTTTCGATTTTTTTTAAAGTCATCAGCAAGAAGCGAGGC
ATGGTTCTCAAACGAGTTCCCCGACAAACATAGGTCCCAAACCATAGCAA
TGGCAGACCACAAACAAACTTTGATTTTATCACCAATAGAGAACTTCCGA
TCTTTTTTTCCTTTTTGCAGTCATCTTTATACTGTGCAAAACCGGCGGGA
GGTATAATAGAAGAATTGGTAGTGTATGATTTTCCCCGGTAATAGGACGT
ACTGTAGTGATGCTGATTTTATGGCGCCCTGATATCTTTTGTTTTTTTGT
TGTGTCAACTTGATTTTTGTGGGATGTGTGATTCCAAGAAACTAATCGTG
CCAGCATCATTCCTCCGAACGCGCGCGACCTGCCCCTTCATCGCCGAGTC
AATCCCCCGGGAGCGACAGTTGTGCTCACCCCACCCGTAGGCGGACAAAA
ATCTCACCAAGCTCGAGCCGCGGCCAGCCGGACGAACGAAAAGCGAAAGG
TGGCCGCAGCAGAGGCGAGCGTGAACCGCGGGGGGCGGAGAAACAATGGC
TTGGGCAACGGACAAAAGCGCTGGGTTTGATGTCAAGGCAAAAACGTACG
TAGGAAAGACTTGTTTTGAAATTGATTGATTTGTGGATTTGGATTTTTAG
GCTTGTTTTGATTTTCGGATTTTGAAGGATGAGGGTTTATTTGGTTCTTT
TGTTCTGCAGGATTTTTTCCATCTTTGAATCTTTCATATTTCGCGTTTTA
CCTGCGAAAAGTAGTACTCGTCGGGCCGTACACCGTCATATTACAAATTA
TTTTGCCAGTATTGGTCCGGAAGGGCTTGATGGACCGTTCGTACTTTTTC
ATCGTCCCGTCTTCGAGTGTTGCGTCTTTGCGCGAACTTTTGTGATGTTG
CGTTGGATAATTTCTTTTTCTTTCAGGGACTGCTTTTGAAATTAAATGTA
AAGCAACTGCTGATCGATTGCTCCGAAAAATCATGGGGGGGTTGATGTGG
ATCTTGACATGATTTCTCTCATAGCTAGTCACAGCAGTTGGTACAGGGTA
TAATTTGCAATTGATAATTTGTTTGCAAATGAGGTATCTGACCGCGTTTT
CACTGCTGCAATAATTTAAATTTGAAGTTGTTGTAGGATATTTTCCAAAT
TTTAGGTTCAGGTTCGTTCCGGGACGCTACGACGGCAGGGGGGCCGTAAG
CAGATGAATCTGGCATGAAGTAACTCTGTTCTTCATTATATGAAGTGGAG
ATTTCCTTTCATCTCTTAACATGATGACGGAAAGTCTATGAAAATCTCCG
TTTTGTTTACTTTGTTTTCAGTTTGTTTATTTCGTGCGGCATGTGATGGT
GCTTCGTGCACCACTGATATTTTTGCGTTGGATTCTGTTTTTCTCATACA
ATAATAGTCGATAAACGATGGTCACTTGGAAAATTGATGGTTGGTGAGTT
TTCTAGTACTAGTGCCGTTTGTATTTCGATGTCGCAGGAGGAGTCATTTC
TGGAAAGAAGAGGCGTTGTTTGTATTATGTGAAATTCGGAAATTCAATCA
TGATCCGCCGTTTTACCTGGTGTGGTTCATGGGATATAACAATGAGTGAT
TTAATGTTTCGTAGATATTGGGGTGCAGCGTAGAAATGTTTTGATGTGCC
GTATCATTACGATGCATACGAGCAGGGGGGCTGAAAGATATATTGGGTGT
CCTCGTAGCATAGTATGATGGATGCTGGATATCTATTTACTACGTAGATT
GCAGCCGGTAGGGTACGACATTCGGGGAAGTTTCTGGGTAGTTTCCCCGG
AGTATCTTGGCATGATGGGAGATTCGGTTCATTGGATTTGGCGACGGAGA
GATTCCGTGATGGATGTACCACATCCACGTCACTCTGCTTTTGGTCTCTG
CGTTTGGTCCCTGCTTTGATACTCTTCATCTTCTCTGGTGTTTGTTTCCT
GCGAGGTCAATAATACAACGAGCGTTTCCTACCTCGGCCTGTGTGGACGA
GGTGCCCTCATCACCACACAACCCCTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig941:8072..11199-

>mRNA_P-littoralis_Contig941.5.1 ID=mRNA_P-littoralis_Contig941.5.1|Name=mRNA_P-littoralis_Contig941.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig941:8072..11199- (Pylaiella littoralis U1_48)
ATGATGGGAGATTCGGTTCATTGGATTTGGCGACGGAGAGATTCCGTGAT
GGATGTACCACATCCACGTCACTCTGCTTTTGGTCTTCTGCTTTTGGTCT
CTGCGTTTGGTCCCTGCTTTGATACTCTTCATCTTCTCTGGTGTTTGTTT
CCTGCGAGGTCAATAATACAACGAGCGTTTCCTACCTCGGCCTGTGTGGA
CGAGGTGCCCTCATCACCACACAACCCCTAG
back to top