mRNA_P-littoralis_Contig941.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig941.4.1
Unique NamemRNA_P-littoralis_Contig941.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig941.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig941contigP-littoralis_Contig941:5774..6824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size477
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791856.6731303-CDS-P-littoralis_Contig941:5773..58431680791856.6731303-CDS-P-littoralis_Contig941:5773..5843Pylaiella littoralis U1_48CDSP-littoralis_Contig941 5774..5843 -
1680791856.6846473-CDS-P-littoralis_Contig941:6130..64711680791856.6846473-CDS-P-littoralis_Contig941:6130..6471Pylaiella littoralis U1_48CDSP-littoralis_Contig941 6131..6471 -
1680791856.700306-CDS-P-littoralis_Contig941:6758..68241680791856.700306-CDS-P-littoralis_Contig941:6758..6824Pylaiella littoralis U1_48CDSP-littoralis_Contig941 6759..6824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig941.4.1prot_P-littoralis_Contig941.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig941 5774..6824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig941.4.1

>prot_P-littoralis_Contig941.4.1 ID=prot_P-littoralis_Contig941.4.1|Name=mRNA_P-littoralis_Contig941.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
RSATINTQLEAAASRAEKVMDKIPSVTSTMGEAGGATATSQPGLAGGVSS
TPSTSIDPMTNGPLLGAIDSLIVDNLKAMVPLINNTLPQVDNIMDKKLAA
MEDSLFKRLREDVLEQTRDGSRKPARSPSSSPMWTRSDKRPNRERQSSPL
DLRSRKRKD
back to top

mRNA from alignment at P-littoralis_Contig941:5774..6824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig941.4.1 ID=mRNA_P-littoralis_Contig941.4.1|Name=mRNA_P-littoralis_Contig941.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1051bp|location=Sequence derived from alignment at P-littoralis_Contig941:5774..6824- (Pylaiella littoralis U1_48)
AGATCCGCTACTATCAACACGCAACTGGAAGCGGCAGCTTCTCGTGCGGA
GAAAGTTATGGACAAGGTGAACATTTAAATCGCGTCTATTTCAATCGTGA
CGTCGCCTCTTTCTGGCACGTGTGACGAAGAAAGGCAGGCATGCCTACTC
GTATTACTAGATGGCCGGCAAGTGTAGGAAGGAAGTCCTATTTTTTTGAT
ACACGGTTCGGTTTACTCCTCTAGTCGTGCCATCAAGCGCCGGCGTGGGA
GGGTTTTTTCTGTGCTCCTCTGTCGACTTATGCCATGTGCGACGAACCGC
TAATTTTAATCGGGACGTTTCCTCCCGTTGTGTGTCTTCTATCGTTTCGG
AAGATACCTTCTGTGACTTCTACTATGGGAGAGGCCGGCGGGGCAACAGC
CACATCGCAGCCCGGCCTTGCCGGTGGTGTGTCCTCCACACCATCAACGT
CCATAGATCCCATGACGAACGGCCCCCTTCTTGGTGCCATCGACAGCCTG
ATCGTCGACAACCTCAAGGCAATGGTGCCCCTCATCAACAATACCCTGCC
GCAAGTCGACAACATTATGGACAAGAAGCTAGCGGCGATGGAAGACTCGT
TGTTCAAGCGTCTTCGCGAGGATGTCCTCGAGCAGACTCGGGACGGCAGT
CGCAAGCCGGCGCGCTCGCCATCCTCATCGCCCATGTGGACGAGGTGACG
GCTCTTACCTTTTTGTTTTGGGTAAGGTTTTATCTGCGAATTTCATTTAC
GACGGCGTTGTAAATGTACTTCGTACGTAATCGCTGTCGACAAGGTTACT
GTTCGTGGTGTATTGCATATGCCTGCAAAGATAATAAATGAGTTATGCAG
GAGGGGTATTACGGTGCAGCTTTTTCGTGTTACAATTGACGCGTGCACCC
AGCCTATGTTTCAGACTTCGAACTATATTTTATTGCTTGTTGATATCGCG
TTCGGGCGTTCACCTGTGCGTCATAACTAAGGTCCGACAAACGTCCGAAC
CGCGAACGCCAGTCGTCCCCGCTCGACCTGAGGAGCCGCAAACGGAAGGA
C
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig941:5774..6824-

>mRNA_P-littoralis_Contig941.4.1 ID=mRNA_P-littoralis_Contig941.4.1|Name=mRNA_P-littoralis_Contig941.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig941:5774..6824- (Pylaiella littoralis U1_48)
AGATCCGCTACTATCAACACGCAACTGGAAGCGGCAGCTTCTCGTGCGGA
GAAAGTTATGGACAAGATACCTTCTGTGACTTCTACTATGGGAGAGGCCG
GCGGGGCAACAGCCACATCGCAGCCCGGCCTTGCCGGTGGTGTGTCCTCC
ACACCATCAACGTCCATAGATCCCATGACGAACGGCCCCCTTCTTGGTGC
CATCGACAGCCTGATCGTCGACAACCTCAAGGCAATGGTGCCCCTCATCA
ACAATACCCTGCCGCAAGTCGACAACATTATGGACAAGAAGCTAGCGGCG
ATGGAAGACTCGTTGTTCAAGCGTCTTCGCGAGGATGTCCTCGAGCAGAC
TCGGGACGGCAGTCGCAAGCCGGCGCGCTCGCCATCCTCATCGCCCATGT
GGACGAGGTCCGACAAACGTCCGAACCGCGAACGCCAGTCGTCCCCGCTC
GACCTGAGGAGCCGCAAACGGAAGGAC
back to top