mRNA_P-littoralis_Contig94.28.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: D7FNH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH0_ECTSI) HSP 1 Score: 499 bits (1284), Expect = 1.580e-170 Identity = 278/360 (77.22%), Postives = 304/360 (84.44%), Query Frame = 1
Query: 331 MVARLAVSLTTAVVLLLVGPAAGKVLGHDTLVAVICHQGTGITAAQLGKSAAGLAKPSPLKIVEEGIPRAVALAQLEQEMEDLNVMHKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFAPALDTPAGRRKPQAAAKRPTAKAEAPQEXXXXXXXXXXXXXXXXXXXXXXXXWGSDEF 1410
++A +A SLT AV +LL PAAGK G GITAAQLGKSAAG+A PSPLK +EEG+PRAVALAQLEQE+EDLNVMHKFDRR+ERLAMVMPLTD FDPG+T FAH+HLQEGD+IS+P SI+SEL+RKQAE+PWQFELKLVRR+ PGKFEPVDVPAPP+ AL GR+EMPQLS+V C+ILDARSPEQF+F+PDWMMKALRLRPRDIVLYRHK LTK I+LQPHSS FLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECID DGKSQEAVCVQDSDVATDF ALDTPAGRRKP A AK P + + XXXXXXXXXXXXXXXX WGSDEF
Sbjct: 2 VMANVAASLT-AVAVLLADPAAGKGAG-------------GITAAQLGKSAAGMAGPSPLKTLEEGLPRAVALAQLEQEIEDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRKGPGKFEPVDVPAPPRAALTGRAEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRKPGAKAKSPDEGSSKKKSREPLEEXXXXXXXXXXXXXXXXGGWGSDEF 347
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A835Z4C9_9STRA (Ubiquitin fusion degradation protein UFD1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C9_9STRA) HSP 1 Score: 247 bits (631), Expect = 3.860e-72 Identity = 124/259 (47.88%), Postives = 175/259 (67.57%), Query Frame = 1
Query: 541 VALAQLEQEMEDLNVMHKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKG-GTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYR----------------------KTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFAPALD 1248
V LA+LEQE+ED+NVM+K+DR+++RL +VMPLTD F+P + F H HLQ D++SLP S++ E+ ++ E PWQFE++ V RR PG + PV++ P ++ L GR+EMPQLS V C+ LDAR+PEQ+IFIPDWMMK+LRL+PRDIV R+K L + G + LQ HS + AV+E ELRHYS++T GTT++F + + K NV++C+D G++ E+VC+QD+DV TD+ LD
Sbjct: 95 VQLAELEQELEDINVMNKYDRKMDRLLLVMPLTDSFEPAVGQFGHGHLQTSDRVSLPQSVLKEVQHRKLEFPWQFEIQRVHRRGPGDYLPVELSMPTRDDLAGRTEMPQLSRVTCSPLDARAPEQYIFIPDWMMKSLRLKPRDIVQLRYKNLPQSTGCVHLQAHSES---AATSHAVLEEELRHYSSLTAGTTISFVFNPQGAELGGAKGAKGKAKKGVGARREVKINVVQCVDAGGRAVESVCIQDADVGTDWLKPLD 350
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A7S2UZC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC1_9STRA) HSP 1 Score: 225 bits (574), Expect = 7.850e-65 Identity = 125/292 (42.81%), Postives = 179/292 (61.30%), Query Frame = 1
Query: 454 ITAAQLGKSAAGLAKPSPLKIVEEGIPRAVALAQLEQEMEDLNVMHKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEA--------------------LVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFAPALDTPAGRRK 1269
IT AQ +A A + RA+ LA++EQE+ED N M K DR ++R +VMPLT FDP + AH H+Q GD+IS+P S+ ++++ E PWQFE++++ R G E D P++ + + P L + C++LD R+PE +IF+P WMMK+L LRPRD+V RH VL +G LQPH S+FLK++NH+AV+E+ELRHYS++T G+T+AFRYRK Y F+V+E + +DGK Q+A+CVQD +VA DF LD ++K
Sbjct: 20 ITNAQSSTAAGSQASSLDGNFLMNHFTRALKLAKVEQEVEDFNSMKKLDRSLDRRYIVMPLTRAFDPPVGNIAHNHIQFGDKISMPKSLFKMIMKQHIEPPWQFEIEVINRV--GDCEEKD----PEDGDXXXXXXXXXXXXXXXXXXLSTSKLQWP-LKKLYCSLLDIRAPENYIFLPGWMMKSLGLRPRDVVRMRHFVLPQGTMAKLQPHHSDFLKLTNHRAVLESELRHYSSLTTGSTIAFRYRKKKYFFDVVEVM-SDGKIQDAICVQDCNVAADFVEPLDVVKKKKK 303
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A6V1UP89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UP89_HETAK) HSP 1 Score: 200 bits (508), Expect = 5.870e-55 Identity = 113/275 (41.09%), Postives = 160/275 (58.18%), Query Frame = 1
Query: 535 RAVALAQLEQEMEDLNVMHKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVP------------------------------------APPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFAPALDT 1251
RAV A++EQ +ED N + K D + R ++MP+ + FDP F+ H+Q GD++S+P SI S + R+ PW FE++++ +P + + + + PK G + +L V +ILD +PE +IF PDWM+KALRLRPRD+V R L KGG I L+PHSS+FLK+SNHQAVMETEL+HYS +T G TV +YR T+Y+ +V E + +DGK A+C++D+DVATDF P LDT
Sbjct: 27 RAVYRAKVEQAVEDHNALSKLDNNLNRRCIIMPMNEGFDPPPGSFSRGHIQMGDKMSIPRSIFSHIQREDIGYPWLFEIEVLH--SPEEQDELKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGPKRG--GARKKKELQRVYGSILDYAAPENYIFAPDWMLKALRLRPRDVVEVRLAALPKGGLIKLRPHSSDFLKLSNHQAVMETELKHYSCLTEGATVKIKYRDTVYELDVEELL-SDGKPVGALCIEDTDVATDFLPPLDT 296
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A0G4FQT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQT5_VITBC) HSP 1 Score: 182 bits (461), Expect = 1.080e-47 Identity = 99/267 (37.08%), Postives = 152/267 (56.93%), Query Frame = 1
Query: 484 AGLAKPSPLKIVEEGIPRAVALAQLEQEMEDLNVMHKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKF---------------EPVDVPAPPKEALVGRSEMPQ--LSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDF 1233
A + PS V A+ ++ EQ +ED+N++ K + R R VMP+++ F+P F+H H+ GD++S P +I ++LL + E+PWQF L+ + R+ K + + GR + L V C+ LD R+PE F+F+PDWMM AL L PRD++ L +G T+ QPH+S FLKMSNHQAV+E ELRHYS++T G+T+ +Y + + +V+E + + ++ + VCVQD DV+TDF
Sbjct: 73 ASMESPSQHTAVSNHFSSALERSREEQLVEDINILEKAEGRHGRFLTVMPISEKFNPPPGHFSHDHVMYGDKVSFPRTISTQLLERNLEIPWQFVLEKIDRKELEKVWGGTATTTTXXXXXXXXXXXXXXXGDRIGGRQRYYKSGLKRVYCSTLDFRAPENFVFVPDWMMAALNLMPRDLLYCEFVRLPEGTTVTFQPHNSAFLKMSNHQAVLERELRHYSSLTAGSTIVIKYNRRNFLIDVVE-VKSGSEAYDGVCVQDCDVSTDF 338
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A0P0YV10_9STRA (Symbiotic ubiquitin fusion degradation n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV10_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.840e-42 Identity = 102/254 (40.16%), Postives = 147/254 (57.87%), Query Frame = 1
Query: 517 VEEGIPRAVALAQLEQEMEDLNVM------HKFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTIL-LQPHSSEFLK-MSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFAPALDT 1251
+EE +A LA LEQE+ED N + +R + +PL D FDP + F+H H+Q GD++SLP + +AEVPW F ++ V + E +V + E +VG + LS V+ LD R+P ++F+P WMM+AL L+PRD+V G++ L+PHSS + K +SN QAV+ETELRHYS++T+G+T+AF Y Y F+V + G+ A+ VQD D+ATDF PA DT
Sbjct: 49 LEERFEQAQKLAALEQEIEDHNAAWVASSSDMAESTSKRRLICLPLDDRFDPPMGVFSHGHVQTGDKMSLPRVFFQAIQANKAEVPWLFTVRRVEKSTGEGDE--EVVSSYNERVVGPEQAGSLSQVIGGPLDFRAPPNYVFLPHWMMRALGLQPRDVVDVEITFSVPAGSLARLRPHSSSWSKEISNPQAVLETELRHYSSLTKGSTIAFDYNSKRYWFDVEDLRSAPRGERCSAIRVQDCDIATDFLPAKDT 300
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A7S3Q209_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q209_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.900e-42 Identity = 102/267 (38.20%), Postives = 146/267 (54.68%), Query Frame = 1
Query: 496 KPSPLKIVEEGIPRAVALAQLEQEMEDLNVMHKFDRRIE-------RLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRH-KVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFAPALDTPAGRRK 1269
K P+K + A LA LEQ +ED N + R +V+PL D FDP + F+H H Q GD++SLP S + + A+VPW FE+ V D P+ L E P+LS VV +D RSP+ ++F+P WMM+AL L+PRD+V + + + G + L+PH+SEF+ + NHQAV+ETEL+HYSA+TRG+T+ F Y Y F+V++ + G+ VQD D+A +F A D RK
Sbjct: 42 KSGPVKALMTKWNNANNLAVLEQAVEDYNAEEIVASAPDAASAISYRRLIVLPLDDRFDPPVGVFSHGHTQTGDKMSLPRVFWSAIQKTNADVPWLFEVSRV-----------DGVTGPRVILPPNMEDPKLSKVVGGAIDFRSPDNYVFLPRWMMQALALKPRDVVDVKLIQTVPAGSAVKLRPHASEFVNIGNHQAVLETELKHYSALTRGSTIPFDYLGKRYYFDVVDLRSSPRGEKVPMAKVQDCDIAAEFIRAKDQMKKNRK 297
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: B7GA75_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA75_PHATC) HSP 1 Score: 162 bits (411), Expect = 2.160e-41 Identity = 102/262 (38.93%), Postives = 148/262 (56.49%), Query Frame = 1
Query: 511 KIVEEGIPRAVALAQLEQEMEDLNVMH------KFDRRIERLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIV-LYRHKVLTKGGTILLQPHSSEFLK-MSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFAPALDTPAGRRK 1269
K V +A L++LEQ++ED N + R + +PL+D FDP + F+HKH+Q GD++SLP + + AEVPW F +K + + E D + + + QL VV LD R+P +IF+P WMM+AL ++PRDIV + + + G L+PHSS+F K ++N QAV+ETELRHYS++T+G+T+AF Y K Y F+V+E G+ V VQD D+ATDF A D RR+
Sbjct: 54 KFVSARWQKANELSELEQQVEDYNAEWIATSNGQAQSTRHRRLICLPLSDRFDPPMGSFSHKHVQTGDKMSLPANFWQAIQLNHAEVPWLFSVKRIDGVTGERVEFSD-----DDIITPHKPLAQLDKVVGGPLDFRAPACYIFLPWWMMRALGVKPRDIVEVELFETVPAGSLAKLRPHSSDFGKEIANPQAVLETELRHYSSLTQGSTIAFDYNKKRYWFDVVELRSAPRGEKSSMVKVQDCDIATDFLIARDEIQNRRR 310
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: A0A7S2EXW9_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXW9_TRICV) HSP 1 Score: 160 bits (406), Expect = 5.110e-41 Identity = 100/255 (39.22%), Postives = 142/255 (55.69%), Query Frame = 1
Query: 511 KIVEEGIPRAVALAQLEQEMEDLN-----VMHKFDRRIE-RLAMVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGR-SEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRH-KVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFAPALD 1248
K +E A LA LEQ +ED N V + R +V+PL + FDP F+H H+Q GD++SLP + + + + +AEVPW FE+ V D P+ + R +E P L VV +D RSP ++F+P WMM AL L+PRD+V R + + G + L+PHSSEF+K+ NHQAV+ETEL+HYSA+T+G T+ F Y Y F+V++ G+ VQD D+A +F A D
Sbjct: 39 KAIEAKWSSARDLALLEQAVEDYNAEIVAVAPDVASALSYRRLIVLPLDERFDPPTGVFSHGHVQTGDKMSLPKNFWAAIAKTKAEVPWLFEVSRV-----------DGATGPRAVMPARGAEDPGLDKVVGGAIDFRSPSNYVFLPRWMMIALALKPRDVVDVRLVETVPPGSAVKLRPHSSEFVKIGNHQAVLETELKHYSALTKGATIPFDYNNKRYYFDVVDLRSAPRGEKVPMAKVQDCDIAAEFVRAKD 282
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Match: I2CR02_NANGC (Ubiquitin fusion degradation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR02_NANGC) HSP 1 Score: 157 bits (398), Expect = 3.270e-40 Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 1
Query: 622 MVMPLTDHFDPGITGFAHKHLQEGDQISLPVSIMSELLRKQAEVPWQFELKLVRRRAPGKFEPVDVPAPPKEALVGRSEMPQLSSVVCTILDARSPEQFIFIPDWMMKALRLRPRDIVLYRHKVLTKGGTILLQPHSSEFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFAPALDTPA-GRRKPQAAAKRPTAKAE 1308
+VMP+T+ FDP + H LQ D+I LP S + E+L ++ E PW FE+ + G P P+ L + ++ + D R+PE +IF+PDWMM +LRLRPRD+V R L +GG + QPH + F K++N AV+E EL++YS +T+GTT+ F++ Y +VLE + +A+ +QDSD+ TD P+ + RRKP A A TAK E
Sbjct: 26 IVMPMTELFDPPLGSILHGKLQYSDKIMLPKSFIYEVLGRKLEPPWHFEITPLDDLYTGAPSPFLAPS-----LAHWRRRHPVQALHASNFDFRAPENYIFMPDWMMLSLRLRPRDVVAMRFVRLPEGGLVSFQPHQAAFNKLANVHAVLEQELKYYSCVTQGTTIRFKHNGKEYALDVLETLGPKDVKVDAIKIQDSDIRTDIRPSKEEEKIRRRKPAAGASGTTAKGE 250 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig94.28.1 >prot_P-littoralis_Contig94.28.1 ID=prot_P-littoralis_Contig94.28.1|Name=mRNA_P-littoralis_Contig94.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=397bp MATRDQAPYATAGHSSRGSSQHRQQRHQPYGLWQSTMVARLAVSLTTAVVback to top mRNA from alignment at P-littoralis_Contig94:117743..126015+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig94.28.1 ID=mRNA_P-littoralis_Contig94.28.1|Name=mRNA_P-littoralis_Contig94.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8273bp|location=Sequence derived from alignment at P-littoralis_Contig94:117743..126015+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig94:117743..126015+ >mRNA_P-littoralis_Contig94.28.1 ID=mRNA_P-littoralis_Contig94.28.1|Name=mRNA_P-littoralis_Contig94.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1191bp|location=Sequence derived from alignment at P-littoralis_Contig94:117743..126015+ (Pylaiella littoralis U1_48)back to top |