mRNA_P-littoralis_Contig94.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig94.22.1
Unique NamemRNA_P-littoralis_Contig94.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 3.930e-78
Identity = 165/287 (57.49%), Postives = 182/287 (63.41%), Query Frame = 1
Query:  235 KVAKQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLN-----------------------HYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYILENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
            KVAKQ RK+KAAGQ RV   +L RWLTEPVLPCLDKFI+T RKL   R K HEGSA HT G+PAGVG + DLAGPLSLLSK KEGGF VFKD FFPRANI+LLSL+                       HYDLDYVFDP                      V  R G         +G  +  ++RR       +D         A HTTTLSQIVP+ISGGDKTMSDGMLLDVDGG E A AT DKID  SKLSLV+L+A+KTKTE VRQLSLEIF +ASVQDLLP
Sbjct:  584 KVAKQGRKQKAAGQKRVTGPKLARWLTEPVLPCLDKFIRTNRKLAKQRGKDHEGSAGHTPGKPAGVGYITDLAGPLSLLSKSKEGGFRVFKDTFFPRANINLLSLSEDDVKNLRGEEKNRWSKTKRLRAHYDLDYVFDP----------------------VGHRCG---------VGADKGSTRRR-------EDPE------GATHTTTLSQIVPYISGGDKTMSDGMLLDVDGGIEGAVATVDKIDSKSKLSLVNLQAIKTKTERVRQLSLEIFAKASVQDLLP 826          
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 175 bits (443), Expect = 3.580e-48
Identity = 104/262 (39.69%), Postives = 154/262 (58.78%), Query Frame = 1
Query:  244 KQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLNHYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYIL-ENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
            K AR  K  GQ  + ST L + L EP+L C++ F++  R+ + +  +    +A     +PAG G++AD A  L++LS +K+    + + ++FPR++   +  + Y+LDY FDP DIGV + RT V   G  +Q V +F  G Y L +    + QW++L  R G+GVTLEQD+ RYI QL   +    S  VP I   D  + DGM+LDV GG   A  + D ID +S+L   +L  +KT T+ VR  +LEIFT +SV+D+LP
Sbjct:   84 KTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIK-SQYELDYAFDPSDIGVEVGRTTVTW-GNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342          
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.870e-48
Identity = 107/262 (40.84%), Postives = 159/262 (60.69%), Query Frame = 1
Query:  244 KQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLNHYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYILENGEM-IGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
            K AR  K  GQ  + ST L + L EP+LPC++ F++  R+ + +  +    +A  TK +PAG G++AD A  L++LS +K+ G  + + ++FPR+++  +  + Y+LDY F+P  IGV + +T V  +G+ +QKV +F  G Y L + E  + QW++L  RRG GVTLEQD+ RYI QL   +    S  VP I   D  + DGM+LDVDG   RA    D ID  S+L    L  +K  T+ VR  +L+IFT +SV+D+LP
Sbjct:  634 KTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIK-SQYELDYAFNPSHIGVEVGKTTVMWKGK-VQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILP 892          
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.790e-16
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  247 QARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPL 462
            Q R+R+A G TRV+ST+L RWLTEP LPC++ FIQ  RK+  +RAK HEG+A  T  RP GVG++ADLA PL
Sbjct:  553 QLRQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624          
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.810e-14
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 1
Query:  427 GVGSVADLAGPLSLLSKEKEGGFAVFKD-IFFPRANIDLLSLNHYDLDYVFDPLDIGVVLT------RTKVQLEGENIQKVVSFRSGRYILENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTER 885
            GV +V  LA  L+ L+++      + +D ++  R  +D L  + +   Y+F+P  IGV L        TKV++ G  +  V SF +G+Y LE+G  IGQWELL  R G GVTL+ +  R++  L A +T  +++ VPF   G   MS GML +VD    R
Sbjct:  259 GVETVPGLAKMLTGLTEDPNNDNLLVEDGVYCRRDKLDELE-SAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELV-VKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGN-MSGGMLWNVDDAITR 415          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L612_9PHAE3.930e-7857.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0000161E593.580e-4839.69hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE4.870e-4840.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA9_ECTSI3.790e-1661.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ65_ECTSI2.810e-1436.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig94contigP-littoralis_Contig94:83141..84235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHJ0
Model size1026
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.66e-10
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791850.2721732-CDS-P-littoralis_Contig94:83140..836901680791850.2721732-CDS-P-littoralis_Contig94:83140..83690Pylaiella littoralis U1_48CDSP-littoralis_Contig94 83141..83690 +
1680791850.284532-CDS-P-littoralis_Contig94:83759..842351680791850.284532-CDS-P-littoralis_Contig94:83759..84235Pylaiella littoralis U1_48CDSP-littoralis_Contig94 83760..84235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig94.22.1prot_P-littoralis_Contig94.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig94 83141..84235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig94.22.1

>prot_P-littoralis_Contig94.22.1 ID=prot_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp
DSDGDNEGGGVGGGDGGEGSGSNGSDIEGGSGSGGSDSGSDCGSDCGSDS
GSDCGSDSGSGSGSGGGGGGGGGGGGGEKVAKQARKRKAAGQTRVNSTQL
VRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADL
AGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLNHYDLDYVFDPLDIGVV
LTRTKVQLEGENIQKVVSFRSGRYILENGEMIGQWELLSKRRGQGVTLEQ
DVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATE
DKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP
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mRNA from alignment at P-littoralis_Contig94:83141..84235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig94.22.1 ID=mRNA_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-littoralis_Contig94:83141..84235+ (Pylaiella littoralis U1_48)
GACAGCGACGGCGATAACGAGGGGGGCGGTGTCGGGGGTGGCGACGGCGG GGAAGGCAGTGGCAGCAACGGCAGCGATATAGAAGGGGGCAGTGGCAGCG GTGGCAGCGACAGTGGCAGCGACTGCGGCAGCGACTGCGGCAGCGACAGT GGCAGCGACTGTGGCAGCGACAGCGGCAGCGGCAGCGGCAGCGGTGGCGG TGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGAGAAAGTTGCCAAGCAAG CACGAAAGCGTAAGGCAGCTGGGCAAACGAGAGTAAACAGCACGCAACTC GTTCGATGGCTGACGGAACCGGTTCTGCCCTGCTTGGACAAATTCATCCA AACTATTCGCAAGCTTACCACCGACAGAGCGAAATATCACGAGGGTTCGG CACGTCACACGAAGGGGAGGCCTGCCGGAGTGGGGTCGGTCGCGGATCTT GCCGGCCCCCTTTCTCTCCTGTCCAAGGAGAAGGAAGGTGGCTTCGCAGT ATTTAAGGATATTTTCTTTCCGCGAGCCAACATAGACCTGCTCTCTCTGA GTGACAAGGATACCGGCAAGCTGTGGGGGGAGGAAAAAAATCGTTGGTCT AAGACGAAGCGACTCCGAGACCACTACGACTTGGACTACGTCTTTGATCC GTTGGACATCGGTGTGGTGTTGACGCGGACAAAGGTTCAACTCGAAGGTG AAAATATCCAGAAGGTGGTGAGTTTCAGGAGCGGTCGGTACATTCTGGAA AACGGAGAGATGATCGGTCAATGGGAGCTTCTGTCCAAGCGACGCGGGCA AGGCGTGACGCTAGAACAGGACGTCGCGCGGTACATTCTACAACTGGCCG CCGCGCACACCACCACCCTGAGTCAAATCGTGCCGTTCATCTCGGGGGGC GACAAGACAATGAGTGATGGGATGCTGCTGGACGTCGACGGTGGTACGGA ACGTGCGGCAGCCACCGAAGACAAGATAGATCCCGTGAGCAAGCTATCGC TGGTTGACCTCAAGGCAATGAAGACCAAGACGGAAGGGGTCAGGCAGCTT TCTCTTGAAATCTTTACCAGGGCCAGCGTACAAGACCTCCTGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig94:83141..84235+

>mRNA_P-littoralis_Contig94.22.1 ID=mRNA_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig94:83141..84235+ (Pylaiella littoralis U1_48)
GACAGCGACGGCGATAACGAGGGGGGCGGTGTCGGGGGTGGCGACGGCGG
GGAAGGCAGTGGCAGCAACGGCAGCGATATAGAAGGGGGCAGTGGCAGCG
GTGGCAGCGACAGTGGCAGCGACTGCGGCAGCGACTGCGGCAGCGACAGT
GGCAGCGACTGTGGCAGCGACAGCGGCAGCGGCAGCGGCAGCGGTGGCGG
TGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGAGAAAGTTGCCAAGCAAG
CACGAAAGCGTAAGGCAGCTGGGCAAACGAGAGTAAACAGCACGCAACTC
GTTCGATGGCTGACGGAACCGGTTCTGCCCTGCTTGGACAAATTCATCCA
AACTATTCGCAAGCTTACCACCGACAGAGCGAAATATCACGAGGGTTCGG
CACGTCACACGAAGGGGAGGCCTGCCGGAGTGGGGTCGGTCGCGGATCTT
GCCGGCCCCCTTTCTCTCCTGTCCAAGGAGAAGGAAGGTGGCTTCGCAGT
ATTTAAGGATATTTTCTTTCCGCGAGCCAACATAGACCTGCTCTCTCTGA
ACCACTACGACTTGGACTACGTCTTTGATCCGTTGGACATCGGTGTGGTG
TTGACGCGGACAAAGGTTCAACTCGAAGGTGAAAATATCCAGAAGGTGGT
GAGTTTCAGGAGCGGTCGGTACATTCTGGAAAACGGAGAGATGATCGGTC
AATGGGAGCTTCTGTCCAAGCGACGCGGGCAAGGCGTGACGCTAGAACAG
GACGTCGCGCGGTACATTCTACAACTGGCCGCCGCGCACACCACCACCCT
GAGTCAAATCGTGCCGTTCATCTCGGGGGGCGACAAGACAATGAGTGATG
GGATGCTGCTGGACGTCGACGGTGGTACGGAACGTGCGGCAGCCACCGAA
GACAAGATAGATCCCGTGAGCAAGCTATCGCTGGTTGACCTCAAGGCAAT
GAAGACCAAGACGGAAGGGGTCAGGCAGCTTTCTCTTGAAATCTTTACCA
GGGCCAGCGTACAAGACCTCCTGCCC
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