mRNA_P-littoralis_Contig94.22.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE) HSP 1 Score: 270 bits (691), Expect = 3.930e-78 Identity = 165/287 (57.49%), Postives = 182/287 (63.41%), Query Frame = 1
Query: 235 KVAKQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLN-----------------------HYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYILENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
KVAKQ RK+KAAGQ RV +L RWLTEPVLPCLDKFI+T RKL R K HEGSA HT G+PAGVG + DLAGPLSLLSK KEGGF VFKD FFPRANI+LLSL+ HYDLDYVFDP V R G +G + ++RR +D A HTTTLSQIVP+ISGGDKTMSDGMLLDVDGG E A AT DKID SKLSLV+L+A+KTKTE VRQLSLEIF +ASVQDLLP
Sbjct: 584 KVAKQGRKQKAAGQKRVTGPKLARWLTEPVLPCLDKFIRTNRKLAKQRGKDHEGSAGHTPGKPAGVGYITDLAGPLSLLSKSKEGGFRVFKDTFFPRANINLLSLSEDDVKNLRGEEKNRWSKTKRLRAHYDLDYVFDP----------------------VGHRCG---------VGADKGSTRRR-------EDPE------GATHTTTLSQIVPYISGGDKTMSDGMLLDVDGGIEGAVATVDKIDSKSKLSLVNLQAIKTKTERVRQLSLEIFAKASVQDLLP 826
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59) HSP 1 Score: 175 bits (443), Expect = 3.580e-48 Identity = 104/262 (39.69%), Postives = 154/262 (58.78%), Query Frame = 1
Query: 244 KQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLNHYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYIL-ENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
K AR K GQ + ST L + L EP+L C++ F++ R+ + + + +A +PAG G++AD A L++LS +K+ + + ++FPR++ + + Y+LDY FDP DIGV + RT V G +Q V +F G Y L + + QW++L R G+GVTLEQD+ RYI QL + S VP I D + DGM+LDV GG A + D ID +S+L +L +KT T+ VR +LEIFT +SV+D+LP
Sbjct: 84 KTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIK-SQYELDYAFDPSDIGVEVGRTTVTW-GNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE) HSP 1 Score: 184 bits (466), Expect = 4.870e-48 Identity = 107/262 (40.84%), Postives = 159/262 (60.69%), Query Frame = 1
Query: 244 KQARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPLSLLSKEKEGGFAVFKDIFFPRANIDLLSLNHYDLDYVFDPLDIGVVLTRTKVQLEGENIQKVVSFRSGRYILENGEM-IGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTERAAATEDKIDPVSKLSLVDLKAMKTKTEGVRQLSLEIFTRASVQDLLP 1026
K AR K GQ + ST L + L EP+LPC++ F++ R+ + + + +A TK +PAG G++AD A L++LS +K+ G + + ++FPR+++ + + Y+LDY F+P IGV + +T V +G+ +QKV +F G Y L + E + QW++L RRG GVTLEQD+ RYI QL + S VP I D + DGM+LDVDG RA D ID S+L L +K T+ VR +L+IFT +SV+D+LP
Sbjct: 634 KTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIK-SQYELDYAFNPSHIGVEVGKTTVMWKGK-VQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILP 892
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 3.790e-16 Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query: 247 QARKRKAAGQTRVNSTQLVRWLTEPVLPCLDKFIQTIRKLTTDRAKYHEGSARHTKGRPAGVGSVADLAGPL 462
Q R+R+A G TRV+ST+L RWLTEP LPC++ FIQ RK+ +RAK HEG+A T RP GVG++ADLA PL
Sbjct: 553 QLRQRRAEGTTRVDSTELGRWLTEPFLPCMEAFIQQNRKIADERAKDHEGTAPTTPKRPVGVGTLADLANPL 624
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 2.810e-14 Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 427 GVGSVADLAGPLSLLSKEKEGGFAVFKD-IFFPRANIDLLSLNHYDLDYVFDPLDIGVVLT------RTKVQLEGENIQKVVSFRSGRYILENGEMIGQWELLSKRRGQGVTLEQDVARYILQLAAAHTTTLSQIVPFISGGDKTMSDGMLLDVDGGTER 885
GV +V LA L+ L+++ + +D ++ R +D L + + Y+F+P IGV L TKV++ G + V SF +G+Y LE+G IGQWELL R G GVTL+ + R++ L A +T +++ VPF G MS GML +VD R
Sbjct: 259 GVETVPGLAKMLTGLTEDPNNDNLLVEDGVYCRRDKLDELE-SAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELV-VKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGN-MSGGMLWNVDDAITR 415 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig94.22.1 >prot_P-littoralis_Contig94.22.1 ID=prot_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=342bp DSDGDNEGGGVGGGDGGEGSGSNGSDIEGGSGSGGSDSGSDCGSDCGSDSback to top mRNA from alignment at P-littoralis_Contig94:83141..84235+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig94.22.1 ID=mRNA_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-littoralis_Contig94:83141..84235+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig94:83141..84235+ >mRNA_P-littoralis_Contig94.22.1 ID=mRNA_P-littoralis_Contig94.22.1|Name=mRNA_P-littoralis_Contig94.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1026bp|location=Sequence derived from alignment at P-littoralis_Contig94:83141..84235+ (Pylaiella littoralis U1_48)back to top |