mRNA_P-littoralis_Contig94.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig94.16.1
Unique NamemRNA_P-littoralis_Contig94.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig94.16.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 7.980e-5
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    4 NNVGNGLCNAIVNTAECGWDGGDCCECTC 90
            N++GNG CN   N A+CG+DGGDCCECTC
Sbjct:   84 NSIGNGYCNCQNNNADCGYDGGDCCECTC 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI82_ECTSI7.980e-568.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig94contigP-littoralis_Contig94:64729..67830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LSC0
PFAMsBeta_helix,Chlam_PMP
Model size1624
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.01e-07
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791850.1591735-CDS-P-littoralis_Contig94:64728..647621680791850.1591735-CDS-P-littoralis_Contig94:64728..64762Pylaiella littoralis U1_48CDSP-littoralis_Contig94 64729..64762 +
1680791850.1756608-CDS-P-littoralis_Contig94:65147..652291680791850.1756608-CDS-P-littoralis_Contig94:65147..65229Pylaiella littoralis U1_48CDSP-littoralis_Contig94 65148..65229 +
1680791850.201088-CDS-P-littoralis_Contig94:65669..657311680791850.201088-CDS-P-littoralis_Contig94:65669..65731Pylaiella littoralis U1_48CDSP-littoralis_Contig94 65670..65731 +
1680791850.2180183-CDS-P-littoralis_Contig94:66385..664861680791850.2180183-CDS-P-littoralis_Contig94:66385..66486Pylaiella littoralis U1_48CDSP-littoralis_Contig94 66386..66486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791850.2309248-UTR-P-littoralis_Contig94:66486..678301680791850.2309248-UTR-P-littoralis_Contig94:66486..67830Pylaiella littoralis U1_48UTRP-littoralis_Contig94 66487..67830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig94.16.1prot_P-littoralis_Contig94.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig94 64729..66486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig94.16.1

>prot_P-littoralis_Contig94.16.1 ID=prot_P-littoralis_Contig94.16.1|Name=mRNA_P-littoralis_Contig94.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
GNNVGNGLCNAIVNTAECGWDGGDCCECTCDDGVSERNILRRLSRPDSGW
SHYLPMKPPDVEASVAIIFDGGAEKPPLAVGSEGTREHPHSA*
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mRNA from alignment at P-littoralis_Contig94:64729..67830+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig94.16.1 ID=mRNA_P-littoralis_Contig94.16.1|Name=mRNA_P-littoralis_Contig94.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3102bp|location=Sequence derived from alignment at P-littoralis_Contig94:64729..67830+ (Pylaiella littoralis U1_48)
GGCAACAACGTCGGCAACGGCCTCTGTAATGCGAGTAAGTATCTCTGCGT
ACACATGTGTAAAAGATTGGTTGTAATCGAAAGATTGGTTGTGTAAAAGA
TTGTTTCTAACCGTTTGCCGCAGTCAAAACACGGTCAACTTGAGAGGTGC
TGTCTGTCGACTAAACGCGGTGTCTCTCGCTGGTGATGTTCGGATGAAAG
ATAACATCGTCCGACTCGTACGAATTTTCGATTTCAACTTTTAGGAGTAG
TTGGAAGTGGCCCTGAAGGTATAACACCTCGTCCATCATACCTTTTACGA
ATTTCTCGACCTCACCAACGACTATGATTCCTCGGCATTCTGCTCGGATA
AAAGTATAACACCTCGTTATCATACCTTCTACGAATTTCTCGACGTCATC
GACGACTACCGGCTTGAAGTTGTGAACACTGCGGAATGTGGCTGGGACGG
GGGCGACTGCTGCGAGTGCACCTGTGATGACGGGGTGAGCGAGCGAAATA
TGTGTAGACGATAAAGGATTTCCACGCTTGACTGCCGTAATCGATGCTGT
AGCTGTGTTCTTACGTGACAGCGCCGTCAAGAGGTTCACGTAAGTTTACA
TCAAGTTCTGCCAAAGGATATCGTTGGTAAATGAGGTGAGATCGATGTTC
GTTCGGCGGTTCACGGGCATTGGTCCCGATTCAAGATGCGTGAAGAGTGT
GGAAAGAACGTAATGTTGTTTTAGCAGCAAGTGACCCATATTTACACGAA
GAAAATTACGAagtacAGTATCGTTCTTGATGGCACGTCTTGGCTAGCCG
ACCACCGACACGGCTTGTTGCATTGTCATCCATGACGTCAACCACAAGAA
GAAAAGAAGGAACAGCAAGAGCGAGTCCTACGGCGTGTTGTGTTGCCCAC
CGCTACTGTGGTGACCTCGCGCGTGTTGATTTGTTTTCCAGACTTCGACG
ATTGTCAAGACCCGACTCAGGCTGGAGTCACTACTTGCCCATGAAGCCCC
CAGGTGCGGTGTGGCTGTCCGGCCTCCTCGTGATTTTTGTAACAATCTAA
GAAAAACAATTTGTCTCCGCTAAATATATTCTTCCGGTGTAAGAAGCTCA
AATGGCGACGGCTAGATGGATGCACCCCTTCTGTCGGGGGCATCAGCGGT
TCCTCAAGGGTCTGTTCGACTCCAACTAGACCTTTCGCAGCCTTCGTTTG
TTGTTTAAAAAAAATATTTTCAACATTGGTGATTTTGCAAGACACAATAG
GACATGTTTGTCACAAGGCTACGGACCCTCAAATTTTTCGATCGTGGGAT
GACTTCTTGTAGGTAACACACAAGGAACAGGACTGAATAGTTGTTCGGCG
TTATCCTCCTCCGAACCTCAGACATTTCTCGGCGAATATTTAATGGCTCC
TAATGTGAAAATATGAATATAACAAAGAGATACACCGACGGTTTTTGTAT
GCCGAAAGCTAACAATGAAAGAAATTGCCACCATGACGGCCGGAAAAACA
AAACAAAACAAAACATGAAATGCTTCGAGCTCGTTTTCAATACCAGCAAT
ATTTGTTCAATTTAATGCCGCCTTGAAGCTATCGCGACGATACATGGCGG
CGTACTTTTAAACTCATCTCCTCCCCGCCTCTCCGGACCATATAAACTCT
TTTGCAGATGTCGAGGCCTCAGTTGCGATCATTTTCGACGGGGGCGCCGA
GAAACCACCCCTCGCGGTAGGGTCCGAAGGGACACGGGAACATCCGCATA
GCGCGTAGCCTCGTGTCGTGGGTCTGTGATATTTTTGTTGGGTTGCCTCT
TGGTCGTTTCCACTGGTTGGGTGTGTATCGTGGCCTTCTTTGAGGTTAAA
ACCCTCGACAGTGGGCAGCCGTCGTTTCCGGTTGGTTGGAATTGGTTCTA
TTTTAAGACGGCACGTCAGATTCACCCCATCATGATGTTGATGGAGCTAA
CTAGCAGAAAATACGACACTCTTTTTAAGAGGTTTTTGTAGTAGCTGTGA
GCACGATTCTTACCAAAATCACCTTTTGCAGGCAGTTTGTTGCGAGTGTT
GTGTTGTCGTGATAATGAATCGGCGACCAACATCCTTTTCTGAATGCGGG
TCGATTTGTACGGAGTGTTGTAATTGTCGTGGTCATGAATCGGCAGCAAC
ACCCACATGAAAAATGCTTTTTTTCGTTTGTGTACAAAAGGTTGTAATTT
TTTATCTACAGGGGGCATCTTTGCACTGTGTTATCATTTGATGGTTTACG
AGGCACCTCTTGCGCTTATTACATTTTTTCCCGATTAAGGTAAAACTATC
TTGTGTTTGTAGAGCACGTCGGTAAGGGGGAGTTTGAAAACAAGAGAACC
GACAAGGAGTGCAGGATGGGGATGATTTTCGGGGACGTGAAGAAACGTTT
TATTCGTTCGCAAGCTCTCTCATTTTCGTCTGTCTGTGCTATGCTGTGTT
TCTCCACAAAAAGAAGGATTTTGCTCTTGGGCGCGCAAGCAGATTTTGAT
CACTTTATTTGATCTGAAATGTTACGTGCGGAGAGGGATGATATACTCTG
GTACTTCGTAAGATTTTAACCGAAGAGTATTGACTATTGATCCGTCATGT
CAACATGTACGTATTTGGGATTGTTGTTGCATCCGGCGTGCGAAGTATCG
ACAAGGGAGGCTGTCGCCTCGTCGTGCTGACACATACGTCATGTCGAATT
TAATCCTTGGGGGTCGTCGCATGACGTATACCGAAGAATGTCGTTTATTT
TGTTTTTCTTTCGATTTGTCTTATACTCCGTATTAGAGAGAAATCAATCT
GGCAGAGATTCACCGGCATCCGCCACTCTCTTGGGCCTGTTTACTGTGTC
TCTGCCCATCGACTTGGGCTTTCTCTCCTAAAATGACAACCGCGGTTTCC
TTTGCTCCGGTGTAGACAACTCAATACCTTCTACTGTACGCAACATTCAC
AGGTAACAAGTCTCCCAAATAGGTGAACCATTTCCTGCGCCTTGCAAATT
CCTTTTCTCACCTTCGAAAGAAAGGGGTCGGTGGGCGGGAAAATGATGCA
CAGGCTCACCAGTTTGAGCCGTACTAAGCTGGCACGATTCTAATATTCCC
TC
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Coding sequence (CDS) from alignment at P-littoralis_Contig94:64729..67830+

>mRNA_P-littoralis_Contig94.16.1 ID=mRNA_P-littoralis_Contig94.16.1|Name=mRNA_P-littoralis_Contig94.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig94:64729..67830+ (Pylaiella littoralis U1_48)
GGCAACAACGTCGGCAACGGCCTCTGTAATGCGATTGTGAACACTGCGGA
ATGTGGCTGGGACGGGGGCGACTGCTGCGAGTGCACCTGTGATGACGGGG
TGAGCGAGCGAAATATACTTCGACGATTGTCAAGACCCGACTCAGGCTGG
AGTCACTACTTGCCCATGAAGCCCCCAGATGTCGAGGCCTCAGTTGCGAT
CATTTTCGACGGGGGCGCCGAGAAACCACCCCTCGCGGTAGGGTCCGAAG
GGACACGGGAACATCCGCATAGCGCGTAG
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