mRNA_P-littoralis_Contig94.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig94.129.1
Unique NamemRNA_P-littoralis_Contig94.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.360e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 3 
Query:    9 RRRWAPTTLLWP*CSTTGRGC*ECRYEQAEPLYKRSLAIDEKVYGSDHPEV 161
            RRRWA + +     +  G    + ++E+AEPLY+RSLAIDE+VYG DHPEV
Sbjct:   59 RRRWARSGVSESLNNLAGCLESQGKHEEAEPLYRRSLAIDEEVYGPDHPEV 109
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A6H5KIY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.070e-7
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:   81 RYEQAEPLYKRSLAIDEKVYGSDHPEV 161
            +Y++AEPLYKRSLAIDEKVYG DHP+V
Sbjct:  353 KYDEAEPLYKRSLAIDEKVYGPDHPDV 379
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.500e-7
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:   81 RYEQAEPLYKRSLAIDEKVYGSDHP 155
            +YE+AEPLYKRSLAIDEKVYG DHP
Sbjct:  506 KYEEAEPLYKRSLAIDEKVYGPDHP 530
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A6H5LI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 8.390e-6
Identity = 21/26 (80.77%), Postives = 24/26 (92.31%), Query Frame = 3 
Query:   84 YEQAEPLYKRSLAIDEKVYGSDHPEV 161
            ++ AEPLY+RSLAIDEKVYG DHPEV
Sbjct:  118 FQDAEPLYERSLAIDEKVYGPDHPEV 143
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A7C642_9GAMM (TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7C642_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 1.170e-5
Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:   84 YEQAEPLYKRSLAIDEKVYGSDHPEV 161
            Y+QA+PLY+R+LAIDEKVYG +HPEV
Sbjct:   11 YDQAKPLYERALAIDEKVYGPNHPEV 36
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: D8LDU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU3_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.850e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:   81 RYEQAEPLYKRSLAIDEKVYGSDHPEV 161
            +YE+AEPLY  SLAIDE VYG DHPEV
Sbjct:  123 KYEEAEPLYMFSLAIDENVYGPDHPEV 149
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.620e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:   81 RYEQAEPLYKRSLAIDEKVYGSDHPEV 161
            +Y+ AEPLY RSLAI EKVYG DHPEV
Sbjct:  397 KYDAAEPLYVRSLAIREKVYGPDHPEV 423
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A497QZ23_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A497QZ23_9ARCH)

HSP 1 Score: 46.2 bits (108), Expect = 6.450e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 3 
Query:   84 YEQAEPLYKRSLAIDEKVYGSDHPEV 161
            Y +AEPLYKRSLAI EK++G DHP V
Sbjct:   30 YAKAEPLYKRSLAITEKIFGPDHPNV 55
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BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 9.750e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:   81 RYEQAEPLYKRSLAIDEKVYGSDHPEV 161
            +YE+AEPLY  SLAIDEKVYG DH EV
Sbjct:   89 KYEEAEPLYMLSLAIDEKVYGPDHLEV 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig94.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G180_ECTSI3.360e-752.94TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KIY6_9PHAE5.070e-781.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLW6_9PHAE9.500e-788.00NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5LI51_9PHAE8.390e-680.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A7C642_9GAMM1.170e-576.92TPR repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=... [more]
D8LDU3_ECTSI2.850e-577.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9V8_9PHAE5.620e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A497QZ23_9ARCH6.450e-573.08Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A6H5K5H9_9PHAE9.750e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig94contigP-littoralis_Contig94:580012..580684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-27_001880.2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791849.676217-CDS-P-littoralis_Contig94:580013..5800931680791849.676217-CDS-P-littoralis_Contig94:580013..580093Pylaiella littoralis U1_48CDSP-littoralis_Contig94 580014..580093 -
1680791849.6883225-CDS-P-littoralis_Contig94:580602..5806841680791849.6883225-CDS-P-littoralis_Contig94:580602..580684Pylaiella littoralis U1_48CDSP-littoralis_Contig94 580603..580684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig94.129.1prot_P-littoralis_Contig94.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig94 580014..580684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig94.129.1

>prot_P-littoralis_Contig94.129.1 ID=prot_P-littoralis_Contig94.129.1|Name=mRNA_P-littoralis_Contig94.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
DRGEDAGPRPPFCGHNAQQPGGVVESAGMNRPSHFTSARWPLTRKCTVLI
TRRS
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mRNA from alignment at P-littoralis_Contig94:580012..580684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig94.129.1 ID=mRNA_P-littoralis_Contig94.129.1|Name=mRNA_P-littoralis_Contig94.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=673bp|location=Sequence derived from alignment at P-littoralis_Contig94:580012..580684- (Pylaiella littoralis U1_48)
GATCGGGGAGAAGACGCTGGGCCCCGACCACCCTTCTGTGGCCATAATGC
TCAACAACCGGGCGGGGTTGTTGAGAGTGCAGGTGAGAGCCGTCAGAAAG
TTCCAGTACTTTTCTAGTGGTGGGATGTGACTGTAGTGGTGTTGAACGTG
CAGGTGAGGGCCATCAGAATTTTCTGGACAAAGTCTTGTGGACAGAGAGA
GGCGGACGTCAATTTCGAAGAATATTCTTGTGGTGGGTATGTCTTGCTCA
ACAACCCGCGGGGTTGTTGAGAGTGCAGGTGAGAGCCGTCAGAAAGTTCC
AGTACTTTTCTAGTGGTGGGATGTGACTGTAGTGGTGTTGAACGTGCAGG
TGAGGGCCATCAGAATTTTCTGGACAAAGTCTTGTGGACAGAGAGAGGCG
GACGTCAATTTCGAAGAATATTCTTGTGGTGGGTATGTCTTGCTCAACAA
CCCGCGGGGTTGTTGAGAGTGCAGGTGAGAGCCGTCAGAATTTTCCAGGA
ATTTTCTAGTGATGGGATGTGACTGTAGTGTCTCCTCATCGCTTGTCCTA
ACCACATTATTTTCGCACTCTTTCGTAATATTCCAGGGTAGGTATGAACA
GGCCGAGCCACTTTACAAGCGCTCGCTGGCCATTGACGAGAAAGTGTACG
GTTCTGATCACCCGGAGGTCGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig94:580012..580684-

>mRNA_P-littoralis_Contig94.129.1 ID=mRNA_P-littoralis_Contig94.129.1|Name=mRNA_P-littoralis_Contig94.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig94:580012..580684- (Pylaiella littoralis U1_48)
GATCGGGGAGAAGACGCTGGGCCCCGACCACCCTTCTGTGGCCATAATGC
TCAACAACCGGGCGGGGTTGTTGAGAGTGCAGGTATGAACAGGCCGAGCC
ACTTTACAAGCGCTCGCTGGCCATTGACGAGAAAGTGTACGGTTCTGATC
ACCCGGAGGTCG
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