mRNA_P-littoralis_Contig1211.6.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1211.6.2
Unique NamemRNA_P-littoralis_Contig1211.6.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1211.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1211contigP-littoralis_Contig1211:18158..23053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1171
Hectar predicted targeting categoryother localisation
Exons3
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.9255238-UTR-P-littoralis_Contig1211:18157..185141680789522.9255238-UTR-P-littoralis_Contig1211:18157..18514Pylaiella littoralis U1_48UTRP-littoralis_Contig1211 18158..18514 +
1680789522.9582887-UTR-P-littoralis_Contig1211:22512..225391680789522.9582887-UTR-P-littoralis_Contig1211:22512..22539Pylaiella littoralis U1_48UTRP-littoralis_Contig1211 22513..22539 +
1680789522.9688225-UTR-P-littoralis_Contig1211:23004..230531680789522.9688225-UTR-P-littoralis_Contig1211:23004..23053Pylaiella littoralis U1_48UTRP-littoralis_Contig1211 23005..23053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.9353027-CDS-P-littoralis_Contig1211:18514..187601680789522.9353027-CDS-P-littoralis_Contig1211:18514..18760Pylaiella littoralis U1_48CDSP-littoralis_Contig1211 18515..18760 +
1680789522.9476972-CDS-P-littoralis_Contig1211:22020..225121680789522.9476972-CDS-P-littoralis_Contig1211:22020..22512Pylaiella littoralis U1_48CDSP-littoralis_Contig1211 22021..22512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1211.6.2prot_P-littoralis_Contig1211.6.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1211 18515..22512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1211.6.2

>prot_P-littoralis_Contig1211.6.2 ID=prot_P-littoralis_Contig1211.6.2|Name=mRNA_P-littoralis_Contig1211.6.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
MNRSSNSRGRVINTDHSPCTMRSPGLLKEDLAGLNRSIQTVLNKKGAGIK
DGLTAQNCARLVRHAQKSADPLAGEKANPIPPGGRVPFSAREAAPDIVAN
KLMKGSRFEDGGGRKFVANKIAGNGDCLFNSVAFAGYGPSCTSMRKVLEK
ALPLRAAVCRVALADLERLLSDGPDGWGLFFCFWQAFDSVVADRLREAEL
EPHQDPVTGRFSVEMARVFVLLCIQAMIPDKSYTQQVASRSSLMC*
back to top

mRNA from alignment at P-littoralis_Contig1211:18158..23053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1211.6.2 ID=mRNA_P-littoralis_Contig1211.6.2|Name=mRNA_P-littoralis_Contig1211.6.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4896bp|location=Sequence derived from alignment at P-littoralis_Contig1211:18158..23053+ (Pylaiella littoralis U1_48)
TACCACCTACTACGCAGAGAGAGGCCGCCACTACCGCCTGCTACAACCAA
TTCGTCTCGTTCACACACACACACACACACACGCACGTGTTTATGATTCC
AGCGTCCGAGTAGACCGGGCTGAAACAAAGAAAGAAAACATTGCCCGATT
CTGTTGCCCAATTTCCTCTGAAGGCCCAGAAGGGGTAACAGGCCCACACT
GTATACTCATTAAATACTACCAGGGCTGCGATTTCCTTGATCATTTATCG
TTAATTTTGTGCCACACACGACGACTGATCGGCCTACTGCCCTGACCCCC
CTCTACTCTTGCCCGCCGGCCTCAACTCTCACTCACGCCTGTTGATGGTT
CGGCTGCATGAATCGTTCATCAAACAGCCGAGGACGTGTTATCAACACCG
ATCACTCTCCTTGCACAATGCGATCACCGGGGCTGCTAAAGGAGGACCTG
GCTGGACTCAACCGCAGCATCCAGACGGTGCTCAACAAGAAGGGAGCAGG
GATCAAAGATGGGCTCACAGCCCAAAATTGCGCCCGGTTGGTGAGGCATG
CCCAGAAATCGGCCGATCCCCTGGCCGGGGAAAAAGCAAACCCCATCCCC
CCGGTGAGTCGTGTTGGACGTATCATGTCATACAGAAAGGCCTCCGTACA
TACAAACGAATCCGCATTACTCTTCCCTGCTTTCGAAGGAGGTTTGTCCT
ACCGTTGTGCAAGTTGTTGATACGGATGGTGTGCACAAAGCCAATAGGAT
CGGCCGTTTATATTAAAGCAACTTTAATCGGAATCGAAAATATTAGTGGG
TAGCCAAACTTACTCCCGCACATGCGGCGCATCAAGCAGATTTTTTATTT
CGCCCTTATTATTCCGGAAGCTGAAGGAAAGGGTGGAATCGAAGAAGTCC
GAGTTTGTAGTCTAAAATGCAGCTCAAAAATCGATTTGACCTAGAACACG
AGCAGAGAGGTTTTGCTGTGCTTTCTGGGAGTACATAGGTGCACATCGAT
GTGTCTTTGCGTAGTCGGTCACAGCCCAACGTGCATCCCCCTGTACGTAT
GTGTGACCTCGGCGAAAGCTGGTGTTCCGTAGATTACTAGAAAGGGGAAA
GGAATTGAGAAGCAGTGTGCGTTGGAGGGCCGCTTCTCAAATATCTGCCT
TACGCCCTGTGCGTTGCTGTTTGTTGGCGTATGATATGGCTGCTGCTTCA
CAGCAGTGCTGCTACTGCAGAACACAGCTGGTGGTGTGCTGGTGTGCGTG
CGCGCCAGCGCAACGAACACAAAAAGCCTCTCATCATTTTTCACAAAAAA
GGGACCCTATTAATAACTCGCCTCCGACAAGATAGCTGTGCGCACAGGAC
ACGGGCTGCGGTGAACCCAGCAGCAGTGGGTAGATGCTATTTACCTCATC
AGTTGAAGCCCTTGGTCGTAGCGATCTGTGATGAACTGGTGCCAATGTGT
TGCAAAATGTGGCCAATATCTCGGACACACACACAGACAGACACACAGAC
ACCATAAACCTCCAAAATTAAACAAAGGCATCCCTGTCTCCGCTTTTTGT
TTTAGAAGTATTCGCACATACACTCACACCTGCACATCACGACAAGTCGG
TATGAATTCCAAGGAGTTGGACACCGAAGTTACACTTCGCTGCGCTCGTG
GACTCCTTCTCAATACAAATCTCTTCGTTCGAGCGTATTCTGATGAGAAT
CCGGAGAGCACCACTCAAGTGTGCAGAAGTATGCAGACAGCAGTAGTTGT
TGCTCTCTACAGTACTCTCATGCCGGTGGTGGTGCTGTGCATTTCGATTA
CAACATCGGTATGATCTTACTCACGATACCACAACACAACTTGTAGCTGC
CTGCTTTACACAAACGGTACCTCCACACGAAGATAGTATCGCCAATTGCA
AAGAAGGAAAACTGTCGGAGCGGAGTCTGAGAAGCTGAGGAGCTCATCCG
AGTTCAATGTCGTCGCCCTGCATGATATGTAGGTATGTACAACGGCAGAA
ATCATGGGACTCTGAAAAGGGTGAGGACTACCAACGCGCCTGAGTTAGGC
CGATGTAGGGCACTATCGTGGATTACGTTAGAGGCACGGTAGCTCCCGCA
CTAACTAGCCTTACAATTGTCACAGCATACGTTTTACGACCGTCTATCCT
CTGACTTGCTGGCCGTGCCTCTTCCTATTCATGTATTGTACCTCCGCCTT
GTTAGATTTTTGATGAACGCAGCCGTAGCTGCGTGGACCCAACCCCATTT
CTCAAACTGAAGCAAGCTGTGTTGTGCCGTTCCTGAAAGCAGCCTGGAAA
AACATTGGTCCTCAAAAACACGAAGCATCGAATGCAGCTGCGGAGGCCGC
TGTGTTCGTGTGTTTATATCCCATCGGTTTTGGTCACCAGTCTCCACCTT
CCTACATACGTTCGGCTTACCAGCCGCGGTTGGTCTCACACAAGATGATG
CATTTCAGGAATTCGAGTTTGTTCCAAGAGCTCCTTACCCAATTTAACCC
AACGCTAAATCCGACGCAACCTCATCGGAATCTGCGGTGGAGGAGTGGTT
CATCGCGGAATACTCAAACTGAGCATGCCGATCAAGCAACGCACACACAT
TCAGTTCCAACTGTTGTCGACAGCACTTTGCCACCACATACTCCCAGCCT
TCCATCACAAGACCCATACAACCGCCGCGTGTTCGCACGTGGTGTGGTGT
GTGGCAGAGCTGCTTGTGGTTGTTGGTCGCTTTTGTGTTGATCTCGCGCC
AAAAGAAAAAACGTTACCTACTGTTAAGAAGGGCTAGGGGGCCTGCTAAC
ATAGCGAGGAATTTCACAAAATGATGGCATGACGTGTCCTTTTTATTTAC
AAGCCAGCATCCTAGACAACGGGGCCTTGTGACGCTGAGTGCCCAAGGTC
GTCTGCGGAGCTGTACTTGATCCTGCCCAACGTTATGGGCACACAGCAGA
GGGCAGCGAGTTTGCTCATATTTCGGCGTTGATCGCCAAGTTTTATCTGA
CCCATGAGGGAAACCAGGGTGTGTACCTTGGTGGCTGTACAACCCAACAA
AATGTGTGAAATTGGTAGCAGCACTACAGAGTTGACGATATAGGCTCTAC
AACGTGGCCTAAAAGCGCCCCAAACCATGATGAACTGCATTTGTTTACTA
GGTTGAGCATTCTGAAACAGAACAACTCGCAATGTTCCTTGGAATCAGCA
ATACATCGATGACGATCAAAAAATGCCCTGAAGGCGACCCAAACCACTCT
GGACTCTGTGGTTTAATAGGTTGAAATTTCCTTGAAAGTTTTGAAGCAAG
GACAACATGTCTACCTCGAAAAATGTCGCCAACATTTCATTGTTTCGTGC
TCCATAACGACTTTTGATCAAAGTTGTGCACTCGAAGTATTGAATTTCCG
AAACCGGTTGAAACTCGGAGGTTGTGTAGCTTGGTCGATGCACTACCCGA
CAAACGTAGGTAGAGTTTGGGATCAGCACAACAGCTCGTCAACCAGCAGA
TTGATTTGCATGTGTCACAGGAAAATTTACGTTGTTCGCTCCATGTAATG
ATAAAATTGGATAAAATTTGTCTTGTCGCTTTAAATAAGAAGGCGATTTC
ATATTGTTTCCTATAGGCAGCAGCACGTGTCTCCGTTGCCGAGGATGGCA
TAGTTTAATGAACGTGCGTGGTTAGGGGCTCACTGTCACGAGGCACCGCG
GACAGACAGACTGGCGGAGGACCTAAAGCTTAAAACCACGTGCGCATGTG
TTCTCCACGAGCCATACCAACTCCAAAACGTGTGTGACTCGATGATTCAT
AACTGCAGTTCTTCGTACGTCGCCTACCGTGCGCACGGGTGCGTACTACT
GTAAACCTGCCAGGGCGGGAGAGTCCCATTCTCCGCGCGCGAGGCGGCAC
CTGATATAGTGGCGAACAAGCTAATGAAGGGATCGAGGTTCGAGGATGGC
GGAGGTCGCAAATTTGTTGCCAACAAAATCGCGGGTAACGGCGATTGCTT
GTTCAACTCGGTTGCGTTCGCGGGCTACGGCCCATCCTGCACCAGCATGC
GCAAGGTGCTAGAAAAGGCACTACCTCTTCGGGCAGCTGTGTGCAGGGTG
GCACTGGCGGACCTCGAGAGGTTGCTGAGCGATGGCCCGGACGGGTGGGG
TTTGTTTTTTTGCTTTTGGCAGGCGTTCGACTCTGTCGTGGCGGACAGAT
TACGTGAGGCCGAGCTGGAACCCCACCAAGACCCTGTGACCGGCCGCTTT
TCGGTTGAGATGGCACGTGTGTTTGTCCTCCTTTGTATCCAGGCGATGAT
CCCGGATAAAAGCTACACCCAGCAGGTTGCTTCCCGCTCCTCGCTGATGT
GCTAGGGGCCAAGATCCGATGCTTTCGCTTGGGTGCGTCAGATATAAGTT
TTAAATCGACACTCACTGTGTATGTGTTTGATTTGCTGACTCCAACAAAC
GTGTATTTTGAGTTAAGATGTGTCCGAAGTACATTTCCAGGGATCGTGCC
GGTATCGATTTTTGATGCTGGGCACAAATAATGTCGTACTCAACCTCTAT
GGTATGGAGGTATGGAAATGTACGGTAACCTACGGTAAACGACCACCGGG
GTAACGCTACCGTGTGGTCCTCGACCCTATACGTAGACGAGAGCACATTT
CAAAGTACGAGTTAGCGCCTTCGGCAATTAATGATTATTTTAAAATGTCA
CCGTATTTTACCAATCACCATCTACCGCGGTAATTCCCGCCAAAATTTCT
GCTGGAAAATTGCCGAGAGGCCCTCTGGTTGTATTTAAATTGTCGATCAG
TAACAAGGCATGTACGTGTTTGACCCTTTTTCATTTCCATGGCTCAGGAG
CGACCGCTTCCACCAACGCGGGTGGGAATCGGTGCAAGCAAACCTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1211:18158..23053+

>mRNA_P-littoralis_Contig1211.6.2 ID=mRNA_P-littoralis_Contig1211.6.2|Name=mRNA_P-littoralis_Contig1211.6.2|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig1211:18158..23053+ (Pylaiella littoralis U1_48)
ATGAATCGTTCATCAAACAGCCGAGGACGTGTTATCAACACCGATCACTC
TCCTTGCACAATGCGATCACCGGGGCTGCTAAAGGAGGACCTGGCTGGAC
TCAACCGCAGCATCCAGACGGTGCTCAACAAGAAGGGAGCAGGGATCAAA
GATGGGCTCACAGCCCAAAATTGCGCCCGGTTGGTGAGGCATGCCCAGAA
ATCGGCCGATCCCCTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGGGCG
GGAGAGTCCCATTCTCCGCGCGCGAGGCGGCACCTGATATAGTGGCGAAC
AAGCTAATGAAGGGATCGAGGTTCGAGGATGGCGGAGGTCGCAAATTTGT
TGCCAACAAAATCGCGGGTAACGGCGATTGCTTGTTCAACTCGGTTGCGT
TCGCGGGCTACGGCCCATCCTGCACCAGCATGCGCAAGGTGCTAGAAAAG
GCACTACCTCTTCGGGCAGCTGTGTGCAGGGTGGCACTGGCGGACCTCGA
GAGGTTGCTGAGCGATGGCCCGGACGGGTGGGGTTTGTTTTTTTGCTTTT
GGCAGGCGTTCGACTCTGTCGTGGCGGACAGATTACGTGAGGCCGAGCTG
GAACCCCACCAAGACCCTGTGACCGGCCGCTTTTCGGTTGAGATGGCACG
TGTGTTTGTCCTCCTTTGTATCCAGGCGATGATCCCGGATAAAAGCTACA
CCCAGCAGGTTGCTTCCCGCTCCTCGCTGATGTGCTAG
back to top