mRNA_P-littoralis_Contig121.115.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig121.115.1
Unique NamemRNA_P-littoralis_Contig121.115.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.650e-18
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            NA+I+ PYA + L  +Q PNSLE  T+ DP  +AE  GNVGGFWDLL+L+ PIF V+  +QDPHL+ R
Sbjct:  201 NAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPR 268
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BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.170e-18
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            N +I  PYA + L ++Q PNSLE  T++DP+ +AE  GNVGGFWDLL+++ PIF V+  +QDPHL+ R
Sbjct:  283 NPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPR 350
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BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.390e-18
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            NA+I+ PYA + L  +Q PNSLE  T+ DP  +AE  GNVGGFWDLL+L+ PIF V+  +QDPHL+ R
Sbjct:  244 NAAIDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPR 311
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BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 8.790e-18
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            N +I  PYA + L  +Q PNSLE  T++DP+ +AE  GNVGGFWDLL+++ PIF V+  +QDPHL+ R
Sbjct:  315 NPAIVKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPR 382
[Close]
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-17
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            N +I  PYA + L ++Q PNS E  T++DP+ +AE  GNVGGFWDLL+++ PIF V+  +QDPHL+ R
Sbjct:  243 NPAIVKPYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPR 310
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BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D7G5W1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5W1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.900e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    7 ASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            +SI  PYA + L IKQGPNSLET T+  PV+I E LG++GGFWD+LLLL P+F V   Q++P L+ R
Sbjct:  127 SSITRPYAFIDLRIKQGPNSLETITEDAPVTIGELLGDIGGFWDILLLLWPVFFVVVSQEEPTLKPR 193
[Close]
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: A0A6H5JND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.210e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 ASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            ++I  PYA + L IKQGPNSLE  T+  PVSI E LG++GGFWD+LLLL P+F V   QQDP L+ R
Sbjct:  268 SNITRPYAFIDLRIKQGPNSLEFITEDSPVSIGELLGDIGGFWDVLLLLWPVFFVVVSQQDPTLKPR 334
[Close]
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.570e-17
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   13 IEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            I +PYA + + I Q  +SLE  T+I+P+ IAE  GNVGGFWDLLLLL PIF +S  +QDPHL+ R
Sbjct:   52 IASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQDPHLKGR 116
[Close]
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.180e-16
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   13 IEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            I +PYA + + I Q  +SLE  T+I+P+ IAE  GNVGGFWDLLL+L PIF +S  +QDPHL+VR
Sbjct:  245 IASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVR 309
[Close]
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.350e-14
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    4 NASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLLLLPIFLVSTLQQDPHLQVR 207
            N +I  PYA + L +KQ  +S E  T+ +P   AE  GN+GGFWDLLL+L P+  V+T QQDPHL+ R
Sbjct:  198 NPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPR 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K6D1_9PHAE1.650e-1857.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K474_9PHAE2.170e-1854.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD2_ECTSI2.390e-1857.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMD1_ECTSI8.790e-1854.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JN97_9PHAE1.200e-1752.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5W1_ECTSI2.900e-1758.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JND4_9PHAE7.210e-1759.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU22_ECTSI9.570e-1758.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU23_ECTSI1.180e-1658.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNQ1_ECTSI2.350e-1451.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig121contigP-littoralis_Contig121:500323..502567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size208
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789522.7888918-CDS-P-littoralis_Contig121:500322..5003931680789522.7888918-CDS-P-littoralis_Contig121:500322..500393Pylaiella littoralis U1_48CDSP-littoralis_Contig121 500323..500393 -
1680789522.799656-CDS-P-littoralis_Contig121:502431..5025671680789522.799656-CDS-P-littoralis_Contig121:502431..502567Pylaiella littoralis U1_48CDSP-littoralis_Contig121 502432..502567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig121.115.1prot_P-littoralis_Contig121.115.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig121 500323..502567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig121.115.1

>prot_P-littoralis_Contig121.115.1 ID=prot_P-littoralis_Contig121.115.1|Name=mRNA_P-littoralis_Contig121.115.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
RNASIEAPYASMKLNIKQGPNSLETSTQIDPVSIAEFLGNVGGFWDLLLL
LLPIFLVSTLQQDPHLQVR
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mRNA from alignment at P-littoralis_Contig121:500323..502567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig121.115.1 ID=mRNA_P-littoralis_Contig121.115.1|Name=mRNA_P-littoralis_Contig121.115.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2245bp|location=Sequence derived from alignment at P-littoralis_Contig121:500323..502567- (Pylaiella littoralis U1_48)
AGGAACGCGTCCATCGAAGCCCCGTACGCGTCCATGAAGCTCAACATTAA
ACAAGGCCCGAATTCGCTGGAAACCTCGACACAGATTGACCCAGTTTCTA
TAGCTGAGTTTCTGGGCAACGTAGGGGGATTTTGGGGTGAGCTTACAAAA
CCGCGCACCCGAATACATTTCGGTAGGAAAGATCTACCGCAAAGCAGAGA
AGAGCACACAACAACTTCCGAGTGACACGACAATGACCCTGCTTTGGAGA
GACATGTAGATTTGAGGTAGTGCTATGTACGTTTCGGCAGCCGTCAGTGC
CGCCGAACATACCCGTTTTTTGACACGGGCCGGTACAGACATTTGTTATA
TCGTCTGCGAGGCGTATATACGAATACACACATAAAGTAGGTGTGCCTAT
ATAATGCCGGTACGTGCCAGCCCGAAGAACCGGCGTCATATAGGGGTACC
GGCACTTTTGCCAATAGCGCCGGTACTGGCACTATCGGGCGGTTGAAAGC
CTTCAATAGTGCCGGTACCGGCGCTACTGAAGAACAACTTGATATTAGAG
CACATACAGTACTGTATCACGCATGTGTACGAGTAGTGTGCCAAATAGAT
AAAGTACATACAGCAGTATTCAATACTGTACTGTAACGCATTGGCTGGGC
ACTCATGTGTTGCACAGAGATACCGGTGATGCTGTACAACCCATCACAGA
GTACATGTACAGTACTCCACTGTGCAGCAACAAATACTGCAACACCCACG
CCGACACAAAAAAACACACACACAATATGACACCAATTTTTGTATTATTT
TGAACGTACGGTACTGAAATCAGACAGAACATTAATCGAACGAAATGCAA
AATACACCTCATCAGGCAAAGCTCTTTTTTTTTGCCCTGAACTTGATGAT
CTGGGTGATATATTTAAATCAAACCCGCGCCAAAAATGACGCAAATCACA
GACAACTTCTGTTCTAGCTTATGATGGCACCAATCGAAAGACCATGCGGT
GGCAACGCAACAGCACACCGGTCGCCCCGGTGGACTAGTGGTCCCTCGTT
AACCACTAGATGCAGAGGAACGGGGGTTCGATTCCCGGTGAATGTGTTCC
TTTGCTACTTTGAAAGCGGCTATGCTGTTAGTAAAAGCAGATTCGGCTTC
GCCGACGAGGGTAGGAACCGCGGAACCCTGCTCGCGAGAAAAAATCTCAC
GCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCTCCTGTGTTGACCTTC
CTCCTGTGTGACCCCGTCGATGGGCCTGGCCTGTAGTTTGCAGACTAGTG
TGCCAGAGAATATGGGATGACAACACACACACAGCAGTACAGAAGTAACA
TCACTCTGCAGTACCGTACAGTACAGTACAACAATACAGCAGAAGAGCAG
TATAACATGACCAGGAAATATCAACTGCTTTGACATTGCTGAACCCCCCC
TCTCAAATGAATCCCCTCATATATATATCCGTCTGCCGTGCTGGCTGAGA
GGCGTGCGCTGCGATCATCGCCATTTTCGCCGGCTGCAGAGGGAATGCGG
CGTCTCCGTTGCCACTGTCCGCCTCTCCACACGTGCTGTGGAGACGCCCG
CCACATGATCCTTGACAGTCTACTCCATCAGGGGCATGTGGCGTGGTCAC
TGAATGAGCACACAATTCCCCCCCTGCACACGGCATGGTCTGCCTCTACC
GTCGTGCCTGGCTGTAGGGATAGACCCTGTATGTATGTCGTGCTGTGTAG
GGGTACTGTAGACGGGGATGCAGCTCGTATTTTGTGTCTTTGTTTGATCC
AGCAGATAGTACTGCTGCGGCTAGACCGGCGTTTTTGAGGTAGACAGCAG
TGCCCAAACCGGCGCTATACCGGACCTGCCCTGAATAACGCCGGTTGGCA
CTTTTCACGGTTCAATCTGTGACAAGGGATTTCACCGGCGTTATATAGGG
ATACCGGCACTATTCAACCGGCATTATACAGGCACACCTACTGTAGTGTA
CGAAGTAATACATATGTCTTGAAGATTTGTTGTACCGATGTTGCCCAAAA
CGAAAACTCCGGAGTACACTTTTGTTGCTGTGGTCCCTTTAGATTCAGCG
GCTCGTGTGGCTCAGCAGAAATTGCAATGACGTCTCCTCTTTTCTCTCTC
CTCCTGTCATCGTACACCGTACAGATCTGCTGCTGCTTTTGTTGCCGATC
TTCTTGGTCTCCACATTGCAACAAGATCCCCACCTTCAGGTCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig121:500323..502567-

>mRNA_P-littoralis_Contig121.115.1 ID=mRNA_P-littoralis_Contig121.115.1|Name=mRNA_P-littoralis_Contig121.115.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig121:500323..502567- (Pylaiella littoralis U1_48)
AGGAACGCGTCCATCGAAGCCCCGTACGCGTCCATGAAGCTCAACATTAA
ACAAGGCCCGAATTCGCTGGAAACCTCGACACAGATTGACCCAGTTTCTA
TAGCTGAGTTTCTGGGCAACGTAGGGGGATTTTGGGATCTGCTGCTGCTT
TTGTTGCCGATCTTCTTGGTCTCCACATTGCAACAAGATCCCCACCTTCA
GGTCCGC
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