mRNA_P-littoralis_Contig92.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig92.52.1
Unique NamemRNA_P-littoralis_Contig92.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig92.52.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 7.020e-44
Identity = 91/130 (70.00%), Postives = 103/130 (79.23%), Query Frame = 1 
Query:    1 EGGRVDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRKELSFGHSDVAGETADSAVGETKG 390
            EGG VD GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL R ID +EVF SSPKSNLA A G TR ELSF  SDVAGETA S +GETKG
Sbjct:  361 EGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig92.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE7.020e-4470.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig92contigP-littoralis_Contig92:261337..261926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size592
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791831.6011858-CDS-P-littoralis_Contig92:261336..2617291680791831.6011858-CDS-P-littoralis_Contig92:261336..261729Pylaiella littoralis U1_48CDSP-littoralis_Contig92 261337..261729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791831.6141975-UTR-P-littoralis_Contig92:261729..2619261680791831.6141975-UTR-P-littoralis_Contig92:261729..261926Pylaiella littoralis U1_48UTRP-littoralis_Contig92 261730..261926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig92.52.1prot_P-littoralis_Contig92.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig92 261337..261729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig92.52.1

>prot_P-littoralis_Contig92.52.1 ID=prot_P-littoralis_Contig92.52.1|Name=mRNA_P-littoralis_Contig92.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
EGGRVDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLE
DAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAG
AHGSTRKELSFGHSDVAGETADSAVGETKG*
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mRNA from alignment at P-littoralis_Contig92:261337..261926+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig92.52.1 ID=mRNA_P-littoralis_Contig92.52.1|Name=mRNA_P-littoralis_Contig92.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=590bp|location=Sequence derived from alignment at P-littoralis_Contig92:261337..261926+ (Pylaiella littoralis U1_48)
GAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGT
GGGGAGCGGCAGTATTGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACT
CGTCGGCGGGCGGCGAAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAG
GATGCCGAGGTGTCGAAGCTGCTGCAAGAATTGGCTCTGGGGGGTGGGGA
AGATGACGCGTCTCTCGGAGACTTCGACGAAGATTTTTTGGGTCGACCTA
TCGATCTTGAGGAGGTATTTTCGTCCTCGCCGAAATCGAACCTGGCGGGT
GCCCACGGTTCAACGAGGAAAGAGTTATCCTTTGGCCACTCTGATGTTGC
GGGAGAGACAGCAGACTCTGCGGTGGGTGAAACCAAGGGATGAGGGTCAG
GGTTTTCAGCCTTGCTGGTTTCGAATATCGTCTGCTTGTATCTGTGGTGC
GGGATTGTTTGTGTCTGGGTGACAAACTTGAAAGACTGTATGGTGTTCTG
ACGGTCATCCCCGGGGTCTTCTTGTCAATTTATACGAGTTATTCGATGGA
GTGCAGTGTTGCACATACTTGCCGTTTGTGCCACAAGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig92:261337..261926+

>mRNA_P-littoralis_Contig92.52.1 ID=mRNA_P-littoralis_Contig92.52.1|Name=mRNA_P-littoralis_Contig92.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig92:261337..261926+ (Pylaiella littoralis U1_48)
GAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGT
GGGGAGCGGCAGTATTGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACT
CGTCGGCGGGCGGCGAAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAG
GATGCCGAGGTGTCGAAGCTGCTGCAAGAATTGGCTCTGGGGGGTGGGGA
AGATGACGCGTCTCTCGGAGACTTCGACGAAGATTTTTTGGGTCGACCTA
TCGATCTTGAGGAGGTATTTTCGTCCTCGCCGAAATCGAACCTGGCGGGT
GCCCACGGTTCAACGAGGAAAGAGTTATCCTTTGGCCACTCTGATGTTGC
GGGAGAGACAGCAGACTCTGCGGTGGGTGAAACCAAGGGATGA
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