prot_P-littoralis_Contig92.44.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig92.44.1
Unique Nameprot_P-littoralis_Contig92.44.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length156
Homology
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 9.750e-62
Identity = 109/151 (72.19%), Postives = 123/151 (81.46%), Query Frame = 0
Query:    7 GRAQNRPRISKKRTNPLERTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAA--LQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQMLKAKRSQASP 155
            GRA NRP+  +K+T+PLE+TLAIL+QSMRGNK+VVEMKND EISGILEETDRNM  A   +AA  L C     RAGP     LSMVDVRQTNP+G+VRKMD VLVQGKMIRYVHIPD+VDAISNLQ+HM+TMD+QGY R MLK K SQA P
Sbjct:    3 GRAGNRPQPRQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTC----SRAGPAPS--LSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYHRNMLKPKLSQAPP 147          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.010e-39
Identity = 76/113 (67.26%), Postives = 82/113 (72.57%), Query Frame = 0
Query:   43 MKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQMLKAKRSQASP 155
            MKND EISGILEETDRNMN                         LSMVDVRQTNP+G+VRKMD VLVQGKMIRYVHIPD+VDAISNLQ+HM+TMD+QGYRR MLK K SQA P
Sbjct:    1 MKNDAEISGILEETDRNMN-------------------------LSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYRRNMLKPKTSQAPP 88          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: A0A8K1CIL4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIL4_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 3.780e-10
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = 0
Query:    5 ATGRAQNRPRISKKRTNPLERTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQH--MKTMDEQGYRRQMLKA 148
            AT  A     + KKR  P  R+L +L++S+ G +V +++KND  + GI+EE   +M+                          +++D  +T PNG   +++ V V GK + YVHIPD ++   +LQQ+  M    +  Y+R   KA
Sbjct:    2 ATTTAVGAAPLQKKRRRP--RSLLLLLKSLAGLRVRIDLKNDCVVEGIVEEVLHDMD-------------------------FTLLDACETKPNGRTVRLEEVFVMGKTVLYVHIPDRINISQHLQQYNRMIRQSQDMYKRDKRKA 120          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: A0A5D6XV54_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV54_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.130e-10
Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = 0
Query:   25 RTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQMLKAKRSQAS 154
            R+L +L++S+ G +V V++KND  + G++ E   +M+                          +MVD  +T PNG + +MD V V G+ I YVHIPD ++   +LQQ+ + + +        + KRS AS
Sbjct:   42 RSLLLLLKSLVGLRVRVDLKNDATVEGVVAEVVHDMD-------------------------FTMVDACETKPNGAMVRMDEVFVMGRTILYVHIPDRINLTQHLQQYTRMVRQSAT--MYTRTKRSAAS 144          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: T1IY48_STRMM (Sm domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IY48_STRMM)

HSP 1 Score: 59.7 bits (143), Expect = 1.780e-8
Identity = 32/99 (32.32%), Postives = 49/99 (49.49%), Query Frame = 0
Query:   26 TLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVD 124
            TL  LV+S+      +E+KN++ ++G +E  D  MN                         + M DV    PNG+++K  T  +QG+ +RYVHIPD+VD
Sbjct:   12 TLVCLVKSLEKKATTIELKNESSVTGNIESVDAYMN-------------------------VQMNDVVFLAPNGSLKKFQTFFIQGRQVRYVHIPDDVD 85          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: A0A1V9ZKH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKH8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.060e-8
Identity = 39/125 (31.20%), Postives = 63/125 (50.40%), Query Frame = 0
Query:   25 RTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQ--HMKTMDEQGYRRQMLK 147
            RTL I++QSM G +V +E+K +  + G +EE    M+                         + +  VRQ  P+G V + D + V GKMI YVHIPD V+  ++++   HM   +++ Y+R + K
Sbjct:    8 RTLLIVLQSMLGMEVTIELKTEHVLVGTVEEVTEGMD-------------------------VRLSHVRQVGPSGRVLEFDELYVMGKMILYVHIPDRVNINAHMKDYVHMVERNKKMYKRAVRK 107          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: K3WE98_GLOUD (Sm domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE98_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-8
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = 0
Query:   25 RTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQH 132
            RTL +L++S+ G ++ +++KND+ I GI++E   +M+                          +M++  +T  +G + +MD V V GK + YVHIPD ++   +LQQ+
Sbjct:   44 RTLLLLLKSLVGLRIRIDLKNDSTIEGIVQEVVHDMD-------------------------FTMINACETKTSGKMVRMDEVFVMGKTVLYVHIPDRINLTQHLQQY 126          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: UPI0003F08E1D (uncharacterized protein LOC100367675 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F08E1D)

HSP 1 Score: 61.2 bits (147), Expect = 3.590e-8
Identity = 34/123 (27.64%), Postives = 62/123 (50.41%), Query Frame = 0
Query:   24 ERTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQML 146
            E TL  L+Q++ G   V+E++N++ ++G+++  D  MN                         + M DV   N +G V  +    VQGKMIR+V IPDEV+ ++ ++  + +  E+  R++ +
Sbjct:   29 ENTLICLLQALTGKSTVIELRNESTVTGVIDSVDAYMN-------------------------VFMSDVEFVNADGQVMILSNFFVQGKMIRFVQIPDEVNIVTAIKSQLSSWQERRTRKERV 126          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: A0A6A4VJ36_AMPAM (U7 snRNA-associated Sm-like protein LSm10 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VJ36_AMPAM)

HSP 1 Score: 59.3 bits (142), Expect = 5.200e-8
Identity = 31/108 (28.70%), Postives = 56/108 (51.85%), Query Frame = 0
Query:   26 TLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHM 133
            TL  L+Q+++G+   +E++N++E+ G+++  D  MN                         +++   R T+  GT  + D+  V G+ IRYVHIPDEV  +S ++Q +
Sbjct:   19 TLVCLLQALKGHSTTIELRNESEVCGVIDYVDGFMN-------------------------VTVRPARFTDAAGTCARFDSFFVHGRQIRYVHIPDEVSPLSAIRQQL 101          
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Match: UPI0006B08FA3 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B08FA3)

HSP 1 Score: 58.2 bits (139), Expect = 6.860e-8
Identity = 34/129 (26.36%), Postives = 65/129 (50.39%), Query Frame = 0
Query:   25 RTLAILVQSMRGNKVVVEMKNDTEISGILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGTVRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQMLKAKRSQA 153
            +TL  L+Q+++  +  VE++N+  I G +E  D  MN                         L+M DV  T PN   +K ++  VQGK +R+VHIPD+++ +  +++ +  +  +G  ++  + K++ A
Sbjct:   12 KTLVCLLQALQERETTVELRNEVSILGRIEIVDGYMN-------------------------LTMTDVTLTTPNNEQQKYESFFVQGKQVRFVHIPDDINIVEAIKKQLNLIRGRGQYKERKQHKKALA 115          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig92.44.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5S1_ECTSI9.750e-6272.19Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JYY5_9PHAE1.010e-3967.26Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A8K1CIL4_PYTOL3.780e-1030.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XV54_9STRA8.130e-1030.77Sm domain-containing protein n=1 Tax=Pythium brass... [more]
T1IY48_STRMM1.780e-832.32Sm domain-containing protein n=1 Tax=Strigamia mar... [more]
A0A1V9ZKH8_9STRA3.060e-831.20Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3WE98_GLOUD3.110e-829.63Sm domain-containing protein n=1 Tax=Globisporangi... [more]
UPI0003F08E1D3.590e-827.64uncharacterized protein LOC100367675 n=1 Tax=Sacco... [more]
A0A6A4VJ36_AMPAM5.200e-828.70U7 snRNA-associated Sm-like protein LSm10 n=2 Tax=... [more]
UPI0006B08FA36.860e-826.36U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 29..119
e-value: 0.0046
score: 24.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 31..61
e-value: 2.7E-6
score: 27.0
NoneNo IPR availableGENE3D2.30.30.100coord: 28..127
e-value: 2.5E-22
score: 80.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 18..61
coord: 88..145
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 31..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig92contigP-littoralis_Contig92:199489..203196 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig92.44.1mRNA_P-littoralis_Contig92.44.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig92 199414..207489 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig92.44.1 ID=prot_P-littoralis_Contig92.44.1|Name=mRNA_P-littoralis_Contig92.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MDQDATGRAQNRPRISKKRTNPLERTLAILVQSMRGNKVVVEMKNDTEIS
GILEETDRNMNGAVCAIAALQCLTRRRRAGPRHIWVLSMVDVRQTNPNGT
VRKMDTVLVQGKMIRYVHIPDEVDAISNLQQHMKTMDEQGYRRQMLKAKR
SQASP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf