mRNA_P-littoralis_Contig92.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig92.51.1
Unique NamemRNA_P-littoralis_Contig92.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig92.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig92contigP-littoralis_Contig92:260904..261272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size217
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791828.450801-UTR-P-littoralis_Contig92:260903..2609441680791828.450801-UTR-P-littoralis_Contig92:260903..260944Pylaiella littoralis U1_48UTRP-littoralis_Contig92 260904..260944 +
1680791828.486712-UTR-P-littoralis_Contig92:261234..2612721680791828.486712-UTR-P-littoralis_Contig92:261234..261272Pylaiella littoralis U1_48UTRP-littoralis_Contig92 261235..261272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791828.4617941-CDS-P-littoralis_Contig92:260944..2609741680791828.4617941-CDS-P-littoralis_Contig92:260944..260974Pylaiella littoralis U1_48CDSP-littoralis_Contig92 260945..260974 +
1680791828.475878-CDS-P-littoralis_Contig92:261126..2612341680791828.475878-CDS-P-littoralis_Contig92:261126..261234Pylaiella littoralis U1_48CDSP-littoralis_Contig92 261127..261234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig92.51.1prot_P-littoralis_Contig92.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig92 260945..261234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig92.51.1

>prot_P-littoralis_Contig92.51.1 ID=prot_P-littoralis_Contig92.51.1|Name=mRNA_P-littoralis_Contig92.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
MEVILQRQSKICSKIRDNIEEPIIRSRIHHYRKSGLGAHAFNCSI*
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mRNA from alignment at P-littoralis_Contig92:260904..261272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig92.51.1 ID=mRNA_P-littoralis_Contig92.51.1|Name=mRNA_P-littoralis_Contig92.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig92:260904..261272+ (Pylaiella littoralis U1_48)
GGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTG
ATTCTCCAACGCCAATCCAAGGCACCTTTGGCTATTTTGCAAAACACACT
ACGGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACAT
GCTAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATC
GCGGACGTCGTCCATGGCCACAGATTTGTTCAAAGATTCGTGATAATATT
GAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCT
TGGAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCGGATGA
ATTGGACGATGACAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig92:260904..261272+

>mRNA_P-littoralis_Contig92.51.1 ID=mRNA_P-littoralis_Contig92.51.1|Name=mRNA_P-littoralis_Contig92.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig92:260904..261272+ (Pylaiella littoralis U1_48)
ATGGAGGTGATTCTCCAACGCCAATCCAAGATTTGTTCAAAGATTCGTGA
TAATATTGAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAAT
CAGGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGA
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