mRNA_P-littoralis_Contig916.19.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: D8LHV2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHV2_ECTSI) HSP 1 Score: 523 bits (1346), Expect = 3.660e-180 Identity = 281/430 (65.35%), Postives = 316/430 (73.49%), Query Frame = 1
Query: 7 ARGMLRPLAASL--GEEGGS--SRLGNPRLPVPNEYLAGWALTQNDTACLRRFQNMGYTAPNSTPATSTQGSSGSDLVGDEETDSNVRLWGEATRALMDRVDIVRDLDQRRLAASRCWQRLQSTASTAPISAGADNNGADSDA-PDPPL--PSWADVNDLFESDDGFVRAERERYMEEAAESITPEGGWSADTLSRQWVASYRLSLFETRRQAQRFFSWGIPDEGALDCILEPGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPSDGKWPADCLETFEGDDFFYVGEAEGGATRMPWRLLREEWELERRVAIPNWPGFKDALWWYRRKGAAPL 1275
AR LRP AA+ +EG RL NPR PVPNEYLAGWALTQ DTACL+RFQ+MGYT Q SS + G++ + RLWGEAT+ALMDRVDIV DLDQRRLAASR WQRLQST ++ N G +D P P L P+WADV+ LFESD+GFVR E ERY+EEA E + EGGWS D +SRQWVASY+LS+FETRRQAQRFFSWGIPDEGALDCILEPG RVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPAR+ V + + SG + E RS PS +P + E + V+DWFGEGR PF+PAERGSF+RIA ED FR WSLLICWPSDG+WPA CL+ F G+DFFYVGE EGGATRMPWR+LREEWEL RRV IP WPGF+DALWWY RK L
Sbjct: 60 ARWRLRPSAAAADAADEGADYEGRLDNPRRPVPNEYLAGWALTQYDTACLQRFQDMGYTDCGD------QESSPEETKGEK---AGFRLWGEATKALMDRVDIVHDLDQRRLAASRYWQRLQSTPPKEAPASNTGNKGKFTDLDPSPGLAAPTWADVDALFESDNGFVRRESERYIEEAREGMPSEGGWSGDRVSRQWVASYQLSVFETRRQAQRFFSWGIPDEGALDCILEPGNRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARQRTEVSTTEDE--SGYSVEEAPPRSIENVPS---PEPISMREEE---VDDWFGEGREPFSPAERGSFDRIAREDG---FRKWSLLICWPSDGQWPAGCLQEFAGNDFFYVGEGEGGATRMPWRVLREEWELVRRVEIPTWPGFRDALWWYTRKEPGAL 469
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A8IZE4_CHLRE (Predicted protein (Fragment) n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZE4_CHLRE) HSP 1 Score: 73.6 bits (179), Expect = 9.290e-11 Identity = 69/213 (32.39%), Postives = 89/213 (41.78%), Query Frame = 1
Query: 631 FFSWGIPDEGALDCILE-PGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRS--QPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPSDGKWPADCLETFEGDDFFYVGEAEGGATRMPWRLLREEWELERRVAIPNWPGFKDALWWYRRK 1260
+ SW +P AL+ I + G RV+EVG+G GYWA+LL LR D V D + E P DG A +G A P G++ + S++ DG F G +R +LL+CW A L + GD VGE GAT R L EW RRV +PNW G D L YRR+
Sbjct: 111 YMSWAVPSTEALEVIAQVSGGRVVEVGAGTGYWAWLLALRGVD---VVAVDNDCEYRFKKE-----PADGEEPAAADGED----AELPKGTKGALRYLKSMQVCDG----------PEFLARHGGCPDR-------------ALLLCWARHDMGEAS-LAAYRGDTVVAVGEVYTGATWELDRELHPEWRQVRRVPLPNWTGIHDDLRVYRRR 287
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A6H5JT97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT97_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.410e-10 Identity = 71/232 (30.60%), Postives = 103/232 (44.40%), Query Frame = 1
Query: 634 FSWGIPDEGALDCILEPGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPA-----ERGSFERIALEDAEDKFRAWSLLICWPSDGKWPAD-----CLETFEGDDFFYVGEAEGGATRM-----PW-RLLREEWELER--------RVAIPNWPGFKDALWWYRR 1257
F+W IPDE AL I G ++E+GSGLGYWA LL+ R D + +D A T S PD ++ T S S+ A +G V++ EG TP+ G + LE+ ++ R SL +C+P D + + CL FEGD +VGE G + M PW R +E + E +V +P+WP +D L ++R
Sbjct: 81 FAWAIPDERALRIIKHFGP-IVEIGSGLGYWAKLLRARGVD---INAYDKVA----GTPDTASAAPD--------------SSRTKGKSTSKDAKVKSAAEGVVKEDADEGGGDETPSFWIKVNEGGPD--VLEEPCNEGR--SLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKR 286
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A2K3E8C3_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E8C3_CHLRE) HSP 1 Score: 72.0 bits (175), Expect = 5.810e-10 Identity = 66/213 (30.99%), Postives = 87/213 (40.85%), Query Frame = 1
Query: 631 FFSWGIPDEGALDCILE-PGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPSDGKWPADCLETFEGDDFFYVGEAEGGATRMPWRLLREEWELERRVAIPNWPGFKDALWWYRRKGA 1266
+ SW +P AL+ I + G RV+EVG+G GYWA+LL R D V + R P+ G E + A P G+ + S++ DG F G +R +LL+CW A L + GD VGE + GAT R L EW RRV +PNW G D L YRR+ A
Sbjct: 185 YMSWAVPSAEALEVIAQVSGGRVVEVGAGTGYWAWLLTRRGVDVVAVDNDSEY----RFIREEPA------EGQQEAAAAEGEKAELPKGAH-RYLKSMQVCDG----------PEFLARHGGCPDR-------------ALLLCWARHDMGEAS-LAAYRGDTVVAVGEVQQGATWELDRELHPEWRQVRRVPLPNWTGIHDDLRVYRRRVA 362
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: D8LFK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK6_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 7.450e-10 Identity = 73/230 (31.74%), Postives = 100/230 (43.48%), Query Frame = 1
Query: 634 FSWGIPDEGALDCILEPGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVE-DWFGEGRAP--FTPAERGSFERIALEDAEDKFRAWSLLICWPSDGKWPAD-----CLETFEGDDFFYVGEAEGGATRM-----PW-RLLREEWELER--------RVAIPNWPGFKDALWWYRR 1257
F+W IPDE AL I G ++EVGSGLGYWA LL+ R D + +D A T S PD T +ST S+ S DG + D G G AP + G + + ED+ SL +C+P D + + CL FEGD +VGE G + M PW R +E + E +V +P+WP +D L ++R
Sbjct: 82 FAWAIPDERALRIIKHFGP-IVEVGSGLGYWAKLLRARGVD---INPYDKVA----GTPDTASAAPDSSQ------TKGKST------SKDAKVKSAAEGDGKEDADEGGGGEAPSFWIKVNEGGPDVLEEPCNEDR----SLFLCYPDDFEGETESLGLRCLHAFEGDVVIHVGELFGDSVSMTPGQSPWGRTTSQECQEELASKFHCILKVPLPSWPHSRDTLTVWKR 287
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A2K3E5U3_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E5U3_CHLRE) HSP 1 Score: 66.2 bits (160), Expect = 4.230e-8 Identity = 69/226 (30.53%), Postives = 87/226 (38.50%), Query Frame = 1
Query: 595 LSLFETRRQAQRFFSWGIPDEGALDCILE-PGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPSDGKWPADCLETFEGDDFFYVGEAEGGATRMPWRL---LREEWELERRVAIPNWPGFKDALWWYRRK 1260
L L R A R+ SW +P AL+ I + G RV+EVG+G GYWA+LL LR D V + P DG A +G A P G + S++ DG F G +R +LL+CW A L + GD V GAT W L EW RRV +P W G D L YRR+
Sbjct: 169 LGLLIRDRVAVRYMSWAVPSTEALEVIAQVSGGRVVEVGAGTGYWAWLLALRGVDVVAVDNDSEYH--------FEEEPADGEEPAAADGED----AEVPKGPPIRYFKSMQVCDG----------PEFLARHGGCPDR-------------ALLLCWARHDMGEAS-LAAYRGDTV--VAVVNTGAT---WELDSRKHPEWRQVRRVPLPQWRGIHDDLRVYRRR 353
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A448ZI63_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZI63_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.110e-7 Identity = 64/248 (25.81%), Postives = 88/248 (35.48%), Query Frame = 1
Query: 604 FETRRQAQRFFSWGIPDEGALDCILEPGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPS-----------DGKWPADCLETFEGDDFFYVGEAEGGATRMP--WR----------------LLREEWELERRVAIPNWPGFKDALWWYRRK 1260
FE R +F+W +P E AL C++E G +LE+G+G GYWA+LL R D + +D P GG + R + + GS E+ + E K RA LL+CWP G + A L F G +VGE G R W LR + L +RV +PNWP + L + RK
Sbjct: 290 FELRTCLCTYFAWAVPTENALQCLVELGVPLLEIGAGTGYWAWLLSKRGVD---IAAYD-------------LPDSQGGQ---------------------------------------KHRFRHSIVKDGSIEQAS--SPEHKSRA--LLLCWPDIVGDSAHDDADRGDFGAKALRAFGGSTVVHVGELGPGVVRAAEGWGDPFPPGGSSSSAALQDELRAGFRLSKRVLLPNWPPYNSHLTVWVRK 478
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A2K3D4V7_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D4V7_CHLRE) HSP 1 Score: 63.2 bits (152), Expect = 4.520e-7 Identity = 62/229 (27.07%), Postives = 81/229 (35.37%), Query Frame = 1
Query: 613 RRQAQRFFSWGIPDEGALDCIL-EPGKRVLEVGSGLGYWAYLLKLRSGD----DSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAW------SLLICWPSDGKWPADCLETFEGDDFFYVGEAEGGATRMPWRLLREE---WELERRVAIPNWPGFKDALWWYRR 1257
RR A R +++ +P ALD I E G RV+EVG+G GYWA+LL R D D+ F +P AR PF + F + D + +LL+CW S A L + GD VGE + G T W L EE W R V +P WP +D + YRR
Sbjct: 137 RRVAIRDYAYAVPSAEALDVIAQESGGRVVEVGAGTGYWAWLLSRRGVDVVAVDTGGEMFFQDSPAAREA------------------------------------------------------LPFIIGAKRYFPEMQECDGPEFLARHGGCPDRALLMCWVSSAVGEAS-LAAYRGDTVVAVGETDMGCT---WELNTEEHPEWRQVRYVPLPQWPRIRDDMRVYRR 307
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Match: A0A525L573_9CAUL (Uncharacterized protein n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A525L573_9CAUL) HSP 1 Score: 55.1 bits (131), Expect = 5.470e-5 Identity = 63/244 (25.82%), Postives = 90/244 (36.89%), Query Frame = 1
Query: 574 QWVASYR---LSLFET------RRQAQRFFSWGIPDEGALDCILEPGKRVLEVGSGLGYWAYLLKLRSGDDSRVRCFDPFAPPARRTEGVPSPPPDGGSGATEEGTSRRSTAATPSGSRSQPTTSVEADDGYVEDWFGEGRAPFTPAERGSFERIALEDAEDKFRAWSLLICWPSDGK-WP---ADCLETFEGDDFFYVGEAEGGATRMP--WRLLREEWELERRVAIPNWPGFKDALWWYRRK 1260
+WV S R L+ FE R+ R + + IP A+D + G +LEVG+G GYW+ +L D V A D E G G F + ++ +A F ++L WP+ G+ W A C + F VGE +GG T P +R L ++L VAIP +PG +DAL YRR+
Sbjct: 33 EWVRSGRAPPLAWFEAADFGTVRKAFNREWGFAIPCAEAVDALARLGP-LLEVGAGSGYWSAILAAAGCD-------------------------------------------------------VIATDALAEGNIGYG---FHAGRHFAVRQMTAVEAVRAFPHRAVLCSWPTPGEPWALGAARCAKNV----FALVGEPKGGVTGSPGLYRYLATRFDLAHTVAIPQFPGSRDALSVYRRR 213 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig916.19.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig916.19.4 >prot_P-littoralis_Contig916.19.4 ID=prot_P-littoralis_Contig916.19.4|Name=mRNA_P-littoralis_Contig916.19.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=426bp MLRPLAASLGEEGGSSRLGNPRLPVPNEYLAGWALTQNDTACLRRFQNMGback to top mRNA from alignment at P-littoralis_Contig916:60248..64559- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig916.19.4 ID=mRNA_P-littoralis_Contig916.19.4|Name=mRNA_P-littoralis_Contig916.19.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=4312bp|location=Sequence derived from alignment at P-littoralis_Contig916:60248..64559- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig916:60248..64559- >mRNA_P-littoralis_Contig916.19.4 ID=mRNA_P-littoralis_Contig916.19.4|Name=mRNA_P-littoralis_Contig916.19.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1278bp|location=Sequence derived from alignment at P-littoralis_Contig916:60248..64559- (Pylaiella littoralis U1_48)back to top |