mRNA_P-littoralis_Contig915.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig915.28.1
Unique NamemRNA_P-littoralis_Contig915.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig915.28.1 vs. uniprot
Match: A0A6H5JQW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.280e-7
Identity = 28/92 (30.43%), Postives = 50/92 (54.35%), Query Frame = 3 
Query:  267 SGSSRIEIRQKTDVRPWTGNFSKGESVEIALRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTKSLKVWNMLIQKI 542
            S ++ + + +   + PW G + +GE  +    +F  ++ A    EG+   + S   IPVG+E I+M+ LR  +  D+V K++  WNMLI  +
Sbjct:   99 SSAATLRMTEVKRLAPWDGMYRQGEDEQERFSIFPSNMIAMFAQEGVREVVLSDHIIPVGLEGIDMEDLRRMHSPDSVEKAITAWNMLITSV 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig915.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW6_9PHAE3.280e-730.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig915contigP-littoralis_Contig915:89693..90297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size606
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791825.9975955-CDS-P-littoralis_Contig915:89692..902411680791825.9975955-CDS-P-littoralis_Contig915:89692..90241Pylaiella littoralis U1_48CDSP-littoralis_Contig915 89693..90241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791826.0075488-UTR-P-littoralis_Contig915:90241..902971680791826.0075488-UTR-P-littoralis_Contig915:90241..90297Pylaiella littoralis U1_48UTRP-littoralis_Contig915 90242..90297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig915.28.1prot_P-littoralis_Contig915.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig915 89693..90241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig915.28.1

>prot_P-littoralis_Contig915.28.1 ID=prot_P-littoralis_Contig915.28.1|Name=mRNA_P-littoralis_Contig915.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MSLPGQGEGENRQGTPPQPAADGSSGHHETPVGALSLSPGDLAGIASIVD
QVMRNAPAQAAAQDRGQPHQSGSSRIEIRQKTDVRPWTGNFSKGESVEIA
LRVFKGSVFAWLNSEGLDGFMDSQMEIPVGVENINMQQLRLDYGSDNVTK
SLKVWNMLIQKICCQPIQQQVLACRTPQQAWRV
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mRNA from alignment at P-littoralis_Contig915:89693..90297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig915.28.1 ID=mRNA_P-littoralis_Contig915.28.1|Name=mRNA_P-littoralis_Contig915.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=605bp|location=Sequence derived from alignment at P-littoralis_Contig915:89693..90297- (Pylaiella littoralis U1_48)
TAACACGCTAGCGAGTTCGAACGACGGTGGACTTCTGTGTGAGCGGCCGC
TAGGCCATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAAC
ACCACCACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGG
TCGGCGCGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATT
GTCGACCAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCG
AGGGCAGCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAA
CTGATGTTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAG
ATTGCCCTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGA
AGGGCTTGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGG
AGAACATCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTC
ACAAAATCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCA
GCCTATCCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGC
GTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig915:89693..90297-

>mRNA_P-littoralis_Contig915.28.1 ID=mRNA_P-littoralis_Contig915.28.1|Name=mRNA_P-littoralis_Contig915.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig915:89693..90297- (Pylaiella littoralis U1_48)
ATGTCTCTGCCGGGACAAGGAGAAGGAGAGAACAGACAAGGAACACCACC
ACAACCAGCAGCTGACGGCAGCAGCGGGCATCATGAGACCCCGGTCGGCG
CGCTCTCGTTATCGCCAGGCGACCTGGCCGGGATTGCCTCGATTGTCGAC
CAAGTTATGCGGAACGCACCCGCCCAGGCAGCTGCCCAGGACCGAGGGCA
GCCCCACCAGTCAGGTTCTTCTAGGATTGAGATTAGGCAGAAAACTGATG
TTCGGCCTTGGACGGGGAATTTTTCGAAGGGAGAGAGTGTTGAGATTGCC
CTGCGTGTGTTCAAGGGTTCGGTTTTCGCTTGGCTGAATTCTGAAGGGCT
TGATGGATTTATGGATAGCCAGATGGAGATTCCTGTAGGAGTGGAGAACA
TCAACATGCAACAACTCAGACTTGACTATGGTAGTGATAACGTCACAAAA
TCCCTCAAAGTGTGGAACATGCTCATCCAGAAAATCTGCTGCCAGCCTAT
CCAGCAACAGGTGCTCGCGTGTAGAACCCCTCAGCAGGCATGGCGTGTG
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