mRNA_P-littoralis_Contig915.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig915.13.1
Unique NamemRNA_P-littoralis_Contig915.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig915.13.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 6.940e-20
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:  172 RRHPSSAELRRCLEAARRRANDEAPGFFAALEALGWSTEKFMFGNIKSRVEW 327
            R  PSSAELRRCLEAARRRA + APGFFAALE LGWSTEKFMFGNIKSRVEW
Sbjct:  736 RPQPSSAELRRCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEW 787
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig915.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT88_ECTSI6.940e-2088.46Putative glutamate/ornithine acetyltransferase (IS... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig915contigP-littoralis_Contig915:32039..32490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT88
PFAMsDUF647
Model size452
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.08e-22
EggNOG OGsKOG4249@1|root,KOG4249@2759|Eukaryota
Descriptionresponse to UV-B
Cds size207
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791825.0075312-UTR-P-littoralis_Contig915:32038..321671680791825.0075312-UTR-P-littoralis_Contig915:32038..32167Pylaiella littoralis U1_48UTRP-littoralis_Contig915 32039..32167 +
1680791825.0384433-UTR-P-littoralis_Contig915:32374..324901680791825.0384433-UTR-P-littoralis_Contig915:32374..32490Pylaiella littoralis U1_48UTRP-littoralis_Contig915 32375..32490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791825.0257103-CDS-P-littoralis_Contig915:32167..323741680791825.0257103-CDS-P-littoralis_Contig915:32167..32374Pylaiella littoralis U1_48CDSP-littoralis_Contig915 32168..32374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig915.13.1prot_P-littoralis_Contig915.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig915 32168..32374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig915.13.1

>prot_P-littoralis_Contig915.13.1 ID=prot_P-littoralis_Contig915.13.1|Name=mRNA_P-littoralis_Contig915.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MSSRLGGEEEDNEGRRHPSSAELRRCLEAARRRANDEAPGFFAALEALGW
STEKFMFGNIKSRVEWIL*
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mRNA from alignment at P-littoralis_Contig915:32039..32490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig915.13.1 ID=mRNA_P-littoralis_Contig915.13.1|Name=mRNA_P-littoralis_Contig915.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=452bp|location=Sequence derived from alignment at P-littoralis_Contig915:32039..32490+ (Pylaiella littoralis U1_48)
CCAGGAGCCCCTCCACAAAACGTCGTTGCCGTAGGTCGGTGGGGAAACGA
GCTCGCGGCGGGGGGGGGGGGGGGGGCGGCGGGCGCAGGGGCACCGTTGC
TGAGTAGCGACGAAGAAGAGGCAGATTCTATGTCATCGCGGTTAGGGGGG
GAGGAAGAGGACAACGAGGGGCGGCGTCATCCGTCTTCCGCGGAGTTGCG
CCGCTGTTTGGAGGCCGCCCGACGAAGAGCGAACGACGAGGCGCCCGGGT
TTTTTGCGGCGTTGGAGGCGTTGGGGTGGAGCACGGAGAAGTTTATGTTT
GGCAACATCAAGTCGAGGGTGGAGTGGATACTCTGACGAGAGTCGAGGGA
GGTGGTCATCTGTTTGGTTGGTCGTGATGATTTTTTATTGTCGGGTGCTT
CTGTCGCCAGTCGAGGTTTACAGGTTTTGGGTGTGAGTGAATTTTGCGGG
GG
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Coding sequence (CDS) from alignment at P-littoralis_Contig915:32039..32490+

>mRNA_P-littoralis_Contig915.13.1 ID=mRNA_P-littoralis_Contig915.13.1|Name=mRNA_P-littoralis_Contig915.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig915:32039..32490+ (Pylaiella littoralis U1_48)
ATGTCATCGCGGTTAGGGGGGGAGGAAGAGGACAACGAGGGGCGGCGTCA
TCCGTCTTCCGCGGAGTTGCGCCGCTGTTTGGAGGCCGCCCGACGAAGAG
CGAACGACGAGGCGCCCGGGTTTTTTGCGGCGTTGGAGGCGTTGGGGTGG
AGCACGGAGAAGTTTATGTTTGGCAACATCAAGTCGAGGGTGGAGTGGAT
ACTCTGA
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