mRNA_P-littoralis_Contig915.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig915.3.1
Unique NamemRNA_P-littoralis_Contig915.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.030e-31
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTAL 225
            VSPCLD TDADYSC+VDEDG L L +CG+TDEDVDGGDLASCLD AG+ELVV L+L  NALT LPAGIFEGLTAL
Sbjct:   20 VSPCLDPTDADYSCEVDEDGYLYLYDCGITDEDVDGGDLASCLDNAGQELVVELWLYGNALTALPAGIFEGLTAL 94          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.740e-20
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   10 CLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALEYL 234
            CLD TD DY C++D +G L+L+EC + D+DVD GDLA+CLD AGRE V+ L L  N LTTLP G+F  LTA+E L
Sbjct:   56 CLDPTDTDYRCEIDAEGTLDLSECLIADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTAMETL 130          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5KAC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.700e-20
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALEYL 234
            VS CLD TDAD  CQ+D +G L+L  CG+ D D D  DLASCL+ AG E + +LYL  N LTTLP GIF GLTALE L
Sbjct:   10 VSICLDSTDADR-CQIDANGNLSLGLCGIADTDFD--DLASCLEAAGPETITTLYLSVNELTTLPEGIFGGLTALETL 84          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.230e-20
Identity = 45/75 (60.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   10 CLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALEYL 234
            CLD TD DY C++D +G L+L+EC V D+DVD GDLA+CLD AGRE V+ L L  N LTTLP G+F  LT++E L
Sbjct:   64 CLDPTDTDYRCEIDAEGTLDLSECLVADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTSMETL 138          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1
Query:   70 LTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALE 228
            L +CG+TDEDVDGGDLASCLD AGRELVV L+L +NALTTLPAGIFEGLT L+
Sbjct:   83 LNDCGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVLD 135          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5K2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.130e-19
Identity = 48/78 (61.54%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALEYL 234
            V+ CLD TDAD  CQ+D  G L L  CG TD D D  DLASCL+ AG E + +LYL  N LTTLP GIF GLTALE L
Sbjct:   21 VNVCLDSTDADR-CQIDAHGNLILGLCGTTDADFD--DLASCLEAAGPETITTLYLYRNELTTLPEGIFGGLTALETL 95          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.240e-18
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALE 228
            V+ CLD TDAD  CQ+D +G L+L  CG+TD D D  DLASCL+ AG E + +LYL  N LTTLP GIF GLTAL+
Sbjct:   21 VNVCLDSTDADR-CQIDANGNLSLGLCGITDADFD--DLASCLEAAGPETITTLYLSHNELTTLPEGIFGGLTALQ 93          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5KAY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.070e-18
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALE 228
            V+ CLD TDAD  C++D DG L+L  CG+TD D D  DLASCL+ AG E +  L L  N LTTLP GIF GLTALE
Sbjct:  137 VNVCLDTTDADR-CEIDADGQLDLYSCGITDADFD--DLASCLEDAGPEAITYLSLSQNELTTLPEGIFGGLTALE 209          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.180e-8
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 VSPCLDLTDADYSCQ--VDEDGLLNLTECGVTDEDVDGGDLASCLDTAGRELVVSLYLQTNA-LTTLPAGIFEGL 216
            ++PC D T+ DY CQ  VD+   ++L  C   D D    DL +C ++ G+  + +L+L  +  LTTLPAG+FEGL
Sbjct:  355 INPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDA--ADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGL 427          
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Match: D7FSR9_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR9_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 5.060e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   82 GVTDEDVDGGDLASCLDTAGRELVVSLYLQTNALTTLPAGIFEGLTALE 228
            G+TD DVD  D+A+C D  GR  V  + L  N L +LPAG+F GL AL+
Sbjct:   70 GLTDSDVD--DVAACFDNTGRTSVTKIDLSGNQLASLPAGLFNGLDALQ 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig915.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G7F2_ECTSI2.030e-3181.33Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5KF25_9PHAE1.740e-2060.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KAC1_9PHAE2.700e-2061.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X7_ECTSI3.230e-2060.00ATP binding / amino acid binding / protein kinase/... [more]
D7FL57_ECTSI1.120e-1981.13Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
A0A6H5K2E6_9PHAE6.130e-1961.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ2_9PHAE2.240e-1860.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY3_9PHAE6.070e-1860.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V3_9PHAE6.180e-841.33F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FSR9_ECTSI5.060e-551.02Hypothetical leucine rich repeat protein (Partial)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig915contigP-littoralis_Contig915:4101..5299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G7F2
Preferred nameRIPK4
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,LRR_8,Pkinase,Pkinase_Tyr
Model size311
Max annot lvl2759|Eukaryota
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons4
Evalue3.33e-32
EggNOG OGsCOG0515@1|root,COG4886@1|root,KOG0192@2759|Eukaryota,KOG0619@2759|Eukaryota
EC2.7.11.1
Descriptionregulation of response to stimulus
Cds size309
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791824.9318247-CDS-P-littoralis_Contig915:4100..41761680791824.9318247-CDS-P-littoralis_Contig915:4100..4176Pylaiella littoralis U1_48CDSP-littoralis_Contig915 4101..4176 -
1680791824.9518929-CDS-P-littoralis_Contig915:4583..46551680791824.9518929-CDS-P-littoralis_Contig915:4583..4655Pylaiella littoralis U1_48CDSP-littoralis_Contig915 4584..4655 -
1680791824.963365-CDS-P-littoralis_Contig915:4851..49471680791824.963365-CDS-P-littoralis_Contig915:4851..4947Pylaiella littoralis U1_48CDSP-littoralis_Contig915 4852..4947 -
1680791824.9756005-CDS-P-littoralis_Contig915:5234..52991680791824.9756005-CDS-P-littoralis_Contig915:5234..5299Pylaiella littoralis U1_48CDSP-littoralis_Contig915 5235..5299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig915.3.1prot_P-littoralis_Contig915.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig915 4101..5299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig915.3.1

>prot_P-littoralis_Contig915.3.1 ID=prot_P-littoralis_Contig915.3.1|Name=mRNA_P-littoralis_Contig915.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
VSPCLDLTDADYSCQVDEDGLLNLTECGVTDEDVDGGDLASCLDTAGREL
VVSLYLQTNALTTLPAGIFEGLTALEYLGLYDNSLTTLPAGIFEGLTALA
EL*
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mRNA from alignment at P-littoralis_Contig915:4101..5299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig915.3.1 ID=mRNA_P-littoralis_Contig915.3.1|Name=mRNA_P-littoralis_Contig915.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1199bp|location=Sequence derived from alignment at P-littoralis_Contig915:4101..5299- (Pylaiella littoralis U1_48)
GTTAGTCCGTGCCTCGATCTTACCGACGCCGACTACAGCTGTCAAGTCGA TGAAGACGGACTTCTGTGAGTCTGCCTCTGGCTCTTACGCTGCGAAGACC ACAATTGAGATGTCGCTGGCATGATTACATTGTCTGTAGTCGGCGTGGAC GGATATTAAACGCTTGAGCTGGCTTAGCGAATGCCTTGCAGTATCATTGG ATTCCACTTTGCCTCTTTTAAATACGTTTCGTCAGCATTTTACAGCATGT TCGCGAGGCGTTCCCACCGCCCTAGAATTGCAGTGCGTCAACGCACCACG GACTGATCAAGACATGACCCTCCAACTGTTTACTTGTCCGAACTTACCCT AGGAATTTAACTGAGTGCGGTGTAACTGATGAAGACGTCGACGGTGGTGA TCTCGCATCATGCCTGGACACCGCAGGACGAGAACTCGTCGTGAGCCTGT GAGTGCCATAATTTGCGGGATGGTCCGTTAACCATATGCCTGACGAATTG CTTCACTTCCAGCGCTCGATGAATGACTCCCGTCATGTTGTGCATGGGTG AGCTAGTCGTGGCGTGTACGGCAGTGCTGATGAATTTTCCCGGCTTACTG AGGTGTCTTGTGTGCTCCGTTGGTCGCTTCCCCGACACCGGAAGGTACCT GCAAACCAACGCGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTTGA CGGCGCTGGAATATCTGTAAGTTGCTGTACGACACGGGGGTGTTCTTCTG CGTTTTATAGAGCGAACACGAAATTTTAACGAGTGTTGTCGGTGCACGTT TGGTTGCTATGGAGAGGACGTCCGCACAATTTTTCCTTTGGGCTGGGCAG TCGCATTTGCCACGTGATGGCTTGATTGGAGAGCCCTGCGATGCCTAGCG CGTACCCGATCTCCCTCTCTGACCCAGTGCGGCTGAGGTCCAGGCGCCGG CTCGAGTGATCGATGGCGTCGGTTGCGAGTGGTTGGTTCAACCATCAGTG TATCCGAGCGTCGTCCGTGCACATGGGTGGGCCGGTCGTGGCGTGTACGG CAGTGCTGATGAATATTCCCGGCTTACTGAGGTGTCTTGTGTGCTCCGTT GGTCGCTTCCCCGACACCGGAAGGGGGTTGTATGACAACTCGCTCACCAC CCTGCCGGCGGGGATCTTCGAGGGCTTGACGGCGCTGGCGGAGCTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig915:4101..5299-

>mRNA_P-littoralis_Contig915.3.1 ID=mRNA_P-littoralis_Contig915.3.1|Name=mRNA_P-littoralis_Contig915.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig915:4101..5299- (Pylaiella littoralis U1_48)
GTTAGTCCGTGCCTCGATCTTACCGACGCCGACTACAGCTGTCAAGTCGA
TGAAGACGGACTTCTGAATTTAACTGAGTGCGGTGTAACTGATGAAGACG
TCGACGGTGGTGATCTCGCATCATGCCTGGACACCGCAGGACGAGAACTC
GTCGTGAGCCTGTACCTGCAAACCAACGCGCTCACCACCCTGCCGGCGGG
GATCTTCGAGGGCTTGACGGCGCTGGAATATCTGGGGTTGTATGACAACT
CGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTTGACGGCGCTGGCG
GAGCTGTAA
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