mRNA_P-littoralis_Contig915.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig915.11.1
Unique NamemRNA_P-littoralis_Contig915.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig915.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig915contigP-littoralis_Contig915:17401..18148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791824.8095744-CDS-P-littoralis_Contig915:17401..176381680791824.8095744-CDS-P-littoralis_Contig915:17401..17638Pylaiella littoralis U1_48CDSP-littoralis_Contig915 17402..17638 -
1680791824.8210154-CDS-P-littoralis_Contig915:18082..181481680791824.8210154-CDS-P-littoralis_Contig915:18082..18148Pylaiella littoralis U1_48CDSP-littoralis_Contig915 18083..18148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig915.11.1prot_P-littoralis_Contig915.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig915 17402..18148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig915.11.1

>prot_P-littoralis_Contig915.11.1 ID=prot_P-littoralis_Contig915.11.1|Name=mRNA_P-littoralis_Contig915.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
LYDNALTTLPAGIFEGLTALEVGDLRGLDGTGTSVRCCTTRGCLPVEIET
VQEGTPNISNISSGMDILVCCESSIVCPSKTKRAIVMRNLQTMLSCESMS
L
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mRNA from alignment at P-littoralis_Contig915:17401..18148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig915.11.1 ID=mRNA_P-littoralis_Contig915.11.1|Name=mRNA_P-littoralis_Contig915.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=748bp|location=Sequence derived from alignment at P-littoralis_Contig915:17401..18148- (Pylaiella littoralis U1_48)
CTGTATGACAACGCGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTT
GACGGCGCTGGAAGTTCTGTGAGTTGCTGTACGACACGGGAGGTGTTCTT
TTGCGTTTTATAGAGCGAACACGAAATTTTAACGAGTGTTGTCGGTGCAC
GTTTGGTTGCTATGGAGAGGACGTCCGCACAATTTTTTCTTTGGGCTGGG
CAGTCGCATTTGCCACGTGATGGCTTGATTGGAGAGCCCTGCGATGCACA
GACCGTACCCGATCTCCCTCTCTGACCCAGTGCAGCTGAGGTCCAGCCGC
CGGCGAATGATCGATGCCGTCGGTTGCGAGTGGTCGGTTCAACCATCAGT
GTATCCGAGCGTCGTCCGTGCACATGGGTGGGCTGGTCGTGGCGTGTACG
GCAGTGCCGATGACTTTTCCCGGCTTACTGAGGTGTCTTGTGTGCTCCGT
CGGTCGCTTCCCCGACACCGGAACGTGGCTGTATGACAACGCGCTCATCA
CCCTGTCGGCGGGGATCTTCGAGGGCTTGACGGCACTGGAACTTCTGTAC
GTTGCTGTACGACACGGGGATGCTTGCCCGTGGAGATCGAGACTGTTCAA
GAGGGAACACCAAACATCAGCAATATTTCCTCTGGAATGGACATTCTAGT
ATGCTGTGAAAGCTCGATTGTGTGTCCTTCGAAAACGAAACGCGCCATTG
TCATGCGAAATCTTCAGACCATGCTCTCATGCGAAAGCATGTCGCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig915:17401..18148-

>mRNA_P-littoralis_Contig915.11.1 ID=mRNA_P-littoralis_Contig915.11.1|Name=mRNA_P-littoralis_Contig915.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig915:17401..18148- (Pylaiella littoralis U1_48)
CTGTATGACAACGCGCTCACCACCCTGCCGGCGGGGATCTTCGAGGGCTT
GACGGCGCTGGAAGTTGGGGATCTTCGAGGGCTTGACGGCACTGGAACTT
CTGTACGTTGCTGTACGACACGGGGATGCTTGCCCGTGGAGATCGAGACT
GTTCAAGAGGGAACACCAAACATCAGCAATATTTCCTCTGGAATGGACAT
TCTAGTATGCTGTGAAAGCTCGATTGTGTGTCCTTCGAAAACGAAACGCG
CCATTGTCATGCGAAATCTTCAGACCATGCTCTCATGCGAAAGCATGTCG
CTT
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