mRNA_P-littoralis_Contig913.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig913.11.1
Unique NamemRNA_P-littoralis_Contig913.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.060e-39
Identity = 86/157 (54.78%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVAGRESPEASGGTPQ------SSLLEYMSRKMDKK 690
            PELQ  +E+   ++ G G QSI VTL  PQ GKR+LTAW W+ +SRF+P+INDKNVVCLVK  +G  C HL+KW+ S  + QRGSGTTGL KH+EKFHP   +  KEE GT+ ERK  I+AA+AG  S  +S   P       SSL+ YM  K+DKK
Sbjct:   47 PELQSSSESRTMVNAGRG-QSISVTLMEPQYGKRRLTAWCWQVMSRFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSEGK-QRGSGTTGLTKHIEKFHPTTAQKIKEEEGTQAERKESIQAAIAGDSSAGSSTALPSASASSSSSLVNYMVPKLDKK 201
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.830e-31
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTL+ P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLKEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.120e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.240e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct: 1124 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 1244
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.030e-26
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  211 QPVADSDSHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTA-WVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLL-KWSSSTTQAQ-----RGSGTTGLAKHLEKFHPAVV 543
            +PVA+S   P LQ P ET A++  G GK ++QVTLE P EGKR LT+ W W F SRFSP IN KNVVC+ K  +G  C HL+ KW  + T A      +GSGT+G++KHLE  H   V
Sbjct:   35 EPVAES--VPVLQSPPETQASVDAGNGK-TVQVTLEEPVEGKRMLTSSWTWHFASRFSPPINGKNVVCMAKKADGTTCKHLIMKWEGAATAAVTGKRGKGSGTSGISKHLETAHKVEV 149
[Close]
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.190e-18
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  373 RFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            RF+P+INDKNVVCLVK  +G  C HL+KW+ S +  QRG+GT+ L+KH+ K HPA  K  ++E GT  +RK PIRAA+
Sbjct:  211 RFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSESNKQRGTGTSWLSKHIAKAHPATAKTRRDE-GTPADRKEPIRAAI 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig913.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.060e-3954.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE87_9PHAE2.830e-3150.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.120e-2851.22Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE1.240e-2851.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJD8_9PHAE1.030e-2651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE5.190e-1856.41Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig913contigP-littoralis_Contig913:82111..83326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons2
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.8735895-CDS-P-littoralis_Contig913:82110..827171680791823.8735895-CDS-P-littoralis_Contig913:82110..82717Pylaiella littoralis U1_48CDSP-littoralis_Contig913 82111..82717 +
1680791823.8866432-CDS-P-littoralis_Contig913:83243..833261680791823.8866432-CDS-P-littoralis_Contig913:83243..83326Pylaiella littoralis U1_48CDSP-littoralis_Contig913 83244..83326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig913.11.1prot_P-littoralis_Contig913.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig913 82111..83326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig913.11.1

>prot_P-littoralis_Contig913.11.1 ID=prot_P-littoralis_Contig913.11.1|Name=mRNA_P-littoralis_Contig913.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=230bp
MCRQARRAACATRHTCPARRVRVVCLAMSASDPSVSATPSGEEAASADSS
TPAPGDASQDANESAVNTSDQPVADSDSHPELQPPAETVATISPGGGKQS
IQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHL
LKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRA
AVAGRESPEASGGTPQSSLLEYMSRKMDKK
back to top

mRNA from alignment at P-littoralis_Contig913:82111..83326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig913.11.1 ID=mRNA_P-littoralis_Contig913.11.1|Name=mRNA_P-littoralis_Contig913.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-littoralis_Contig913:82111..83326+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGGTGAGTCATATTACATTATTTAAGTATAATATTTATTATTTAT
TATTTATCACTTCGTATTTATTATTTATTATGTATTGTATAGACTATTTA
CTACTCCGTATTCACTGTTTGTTTGTTTTGTTTTCTATTTTCTATTTTTG
CAACTGATTTTGGGCCGAAAAGACGGAAAATGCTGTTGACTTGATTTTGT
GATTTTGTATTGCCTTCCACAAAGCAACTGAAAATAATTATTAAAATTTA
CACATATTATTGTTGTTTCTATTGTCTCCCCCAAGAGAACACACATGTAC
GTATGTATGTACGAAGTGTGGTTTCTTGTTTATGTCTATTGTCTCATTGT
CTCCTACAAACGAAAAAATAATTTCATAAATTAAGTATTTTTTATTTTTC
TCCCCCAAACGAAAAAATAAAATAAAAAATAGTTGAATTAAATAAAAACT
ATATGAAACTTAAGATTAAAGCTATTTTTTTTTGTCTTTTTTGTTGTTTG
TTTTTCTATTCTCTCTTGGTACCTTTACGGCAGCGGGGCGTGAATCGCCG
GAGGCGTCAGGAGGAACACCTCAGTCGTCACTGCTAGAGTACATGTCACG
GAAGATGGACAAGAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig913:82111..83326+

>mRNA_P-littoralis_Contig913.11.1 ID=mRNA_P-littoralis_Contig913.11.1|Name=mRNA_P-littoralis_Contig913.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=690bp|location=Sequence derived from alignment at P-littoralis_Contig913:82111..83326+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGCGGGGCGTGAATCGCCGGAGGCGTCAGGAGGAACACCTCAGTC
GTCACTGCTAGAGTACATGTCACGGAAGATGGACAAGAAG
back to top