mRNA_P-littoralis_Contig912.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig912.16.1
Unique NamemRNA_P-littoralis_Contig912.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig912.16.1 vs. uniprot
Match: D7FHP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP9_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.600e-94
Identity = 177/283 (62.54%), Postives = 213/283 (75.27%), Query Frame = 1 
Query:    1 KVKIDDGTFFGGEDLVEWLCSRLRQEVAFGAAVCKELEEERLASGIEFDSLSENEKELKKSVQEKAVELEKVERRLADTTEALQSQKQLRVKEMLQNQGAAKEMNGLRSELSELMERINLQADVAAAVEKECAALRSTVQAGRHAREVEDENYQKTLKETLKREEGMMRLKRLLHKAETDKTDMDVRMTRLQREMDRLRATLWSHGISPVSVAAPVSKSNSNV----NPASSATCTGRVAPQGAHRGRQNGLGRRRDDTHHQHKHRQNKKLVPISGHLGSSGS 837
            KVKIDDGTFFGG+DLVEWLCSRL+QE+AF A V KEL+ ERLAS  EFD LSENEK LK  +++K  ELE  ERRL DTTEAL SQKQLR+KEML  QGAAKE+N L+SE+S L  RINLQADV AAVEKEC ALRSTV+ GR  R+VED N++KTL ET+KREEGM+RLKR LH AE ++ + + R++RLQREMDR+RA LW+HGI+P S AA +  +N +V    N A++A  T R+A +GAH  R +G  RRRD         Q  KL P++ HLGSS S
Sbjct:   15 KVKIDDGTFFGGQDLVEWLCSRLKQELAFSAEVRKELQGERLASSREFDRLSENEKRLKNELRDKQSELETAERRLLDTTEALHSQKQLRMKEMLVTQGAAKEINSLQSEVSRLTNRINLQADVTAAVEKECEALRSTVRTGREVRDVEDVNFRKTLAETIKREEGMVRLKRRLHAAEAERRESEARVSRLQREMDRMRAALWAHGINPASAAA-IPGNNKHVVSSSNAAAAANAT-RIAQKGAHWRRPDGPARRRD---------QKNKLAPLA-HLGSSSS 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig912.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHP9_ECTSI2.600e-9462.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig912contigP-littoralis_Contig912:48996..54654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size906
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006260.1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.6684153-CDS-P-littoralis_Contig912:48995..491441680791823.6684153-CDS-P-littoralis_Contig912:48995..49144Pylaiella littoralis U1_48CDSP-littoralis_Contig912 48996..49144 +
1680791823.681034-CDS-P-littoralis_Contig912:50364..505091680791823.681034-CDS-P-littoralis_Contig912:50364..50509Pylaiella littoralis U1_48CDSP-littoralis_Contig912 50365..50509 +
1680791823.7000263-CDS-P-littoralis_Contig912:51788..519081680791823.7000263-CDS-P-littoralis_Contig912:51788..51908Pylaiella littoralis U1_48CDSP-littoralis_Contig912 51789..51908 +
1680791823.7176452-CDS-P-littoralis_Contig912:53190..533101680791823.7176452-CDS-P-littoralis_Contig912:53190..53310Pylaiella littoralis U1_48CDSP-littoralis_Contig912 53191..53310 +
1680791823.7296789-CDS-P-littoralis_Contig912:54282..546541680791823.7296789-CDS-P-littoralis_Contig912:54282..54654Pylaiella littoralis U1_48CDSP-littoralis_Contig912 54283..54654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig912.16.1prot_P-littoralis_Contig912.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig912 48996..54654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig912.16.1

>prot_P-littoralis_Contig912.16.1 ID=prot_P-littoralis_Contig912.16.1|Name=mRNA_P-littoralis_Contig912.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=302bp
KVKIDDGTFFGGEDLVEWLCSRLRQEVAFGAAVCKELEEERLASGIEFDS
LSENEKELKKSVQEKAVELEKVERRLADTTEALQSQKQLRVKEMLQNQGA
AKEMNGLRSELSELMERINLQADVAAAVEKECAALRSTVQAGRHAREVED
ENYQKTLKETLKREEGMMRLKRLLHKAETDKTDMDVRMTRLQREMDRLRA
TLWSHGISPVSVAAPVSKSNSNVNPASSATCTGRVAPQGAHRGRQNGLGR
RRDDTHHQHKHRQNKKLVPISGHLGSSGSSGSSSVNGSSVSFGETRDWKN
NS
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mRNA from alignment at P-littoralis_Contig912:48996..54654+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig912.16.1 ID=mRNA_P-littoralis_Contig912.16.1|Name=mRNA_P-littoralis_Contig912.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5659bp|location=Sequence derived from alignment at P-littoralis_Contig912:48996..54654+ (Pylaiella littoralis U1_48)
AAGGTAAAAATCGACGACGGCACCTTCTTCGGTGGGGAGGACCTCGTCGA
GTGGCTATGCTCCAGGCTCAGGCAAGAGGTGGCCTTTGGCGCCGCGGTTT
GCAAAGAGCTGGAAGAAGAGCGCCTCGCTTCCGGCATAGAATTCGACAGG
TGCATGCACCCCTTGCACGGCACCGTTCAAAAAAAGGACAACCTCTCACC
CTTACCCCGCAGCACCCCTTGGTCGATTTCGAAAGGTTTACTTCTACTCC
CGAAATGAAAAACGGGTGACACCACTGCCAAGCTCCACACTGTTTCGTGA
AGCCGTCTCCGATGGGTCGTTTGACACCCCCCAAGACGCCCATGTCCCGC
AAGAGACCAGGCATCAATCTCGGCACTACTATCAGCAATCACTCATCGTA
TCGGTTTGTGGATATCGAGCTTTCGTTTCTCGTCGCGCGAGGGGGAAAGT
GTAATCGTCACGCCGACGTCGCGTACAGAATGAGCTCCTGTCGTAAGAGT
ACCGACAGCACAACGTACAAGATGAGCTCCCGTAAGAGTACCGACCGCAC
AACGTACAGAATGAGCTCATGTCATCAGAGTACCGACAGCACAACGTACA
GAGTGAGCTCCTGTCGTAAGAATATCGACCGCGCAACGTACATATTGAGA
CCCCGTTGTGAGAGTACCGACCGCGCAACGTACAGAATGAGATCCCGTCG
AAGAGTACCGACAGCACAGAATCCAGCGTTGGTTTTCTAAACTCCAATCA
GCCCCGAAAGATGAGCTACTGCATGATCTCTCGGTGCAGTGGAATATATC
TACTGTTTCTATGCTGGGAGGCGCTGTTCTTCCGTTTCGCGAATGGTTCA
AACCGTTTTCGTGAGCTTCGAGCCCACTTTTCCAGTTTGTTGAGATCATA
GTGCACACGTCGACGCGACATCGTTTTTCACCTCGGCGATTGCTTGGAAA
ACCCGGCAGCAGGCCCGAGACGTCGCTTAACTACTGCTGTAGCCCTGACC
TCTATCAGACGTGTACGCACCACTTTCAGCCAGCCTACAAAATAGGTATG
CGGGTTAGTGAGTGTTGTTGGGACACACTTCGCCTGAGTTATCCCGGGCA
TTCTCCCTGTGAGCACTGGTCTGTTTCCATGCTGTATTTTACTTTATTCA
GCAGGAACTTATAACGTTTTTCATTTTCGCAGTAACAGCTGCTTTAGGTC
GAAAACAGAGAGTCTCCGTTTTATTTTCGTGCTGAAGGGGGGGCAGCGCA
CGTTTTTTGTCCTGCGGTGGAGCCTGTAGTCGCCCGCACTCCTCGCCGTT
GCTGAGTTTTGGTCGCAATTCTCCCCTGCCGCCGCCGCCGCCGCTGCCGC
TGCGCCCTCGCTGGTGTAGTCTTTCTGAAAACGAAAAAGAGTTAAAAAAA
AGTGTCCAGGAAAAGGCGGTGGAACTAGAGAAGGTTGAGAGACGCCTGGC
GGACACAACGGAAGCTCTTCAGTCTCAGAAACAGCTGCGCGTGAAGGAAA
TGCTCCAGAACCAGGTAGTCCACGGATTGTATCTAAATTGCTCTTGTATT
ACTTTTGGTATTGTTTCTGTTTGCTCAAGGGCCTGAAAAACGCTACACCT
GGTATGTGCTACTCTTGAAATTACTCCTGGCTGAAATACTGCGACGATGT
TTCTACTACATGCATACACACCAAGGCATGTGTCGAAAAAAACAATGACG
CCCGGAAGGTACCTCCGCCTTTGGGCGGTATACCTGTTTGTGTATGGCCC
AATGTAAACGTCATTTGTTTTTGTATTTCCTCCTTGCACGATGTCGGGTC
TGCTTTGTGGCTAAACTTGGGATCATCATCATCAACAGCAAGAGCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACACGAAAGTCCGACGACTCCAATCGGCT
CGGCACCGCCGTCCTGTGTACCTTTGGAGGCGCATGAATTTTCATATTCA
AACAGGACGCCTAACCACCGCCATCCTGTGTACCTTTGGAGGCGTATGAA
CTTTCATATTCAAACAGGGTGCCTAACCATCGACCGGGGGTGTCCGCAAG
CGAAGGCGGCCTTAAAAACACACCACCAGCACTGCACCAATAGCGATCAA
AATCAGTCTCATCTCTGATATATCCCCACGACGGTAACAAATATGCGAGT
GACCATACTTGTATCTGAAATCCAAACAAAGGAGAGCAACCATAAAAAAA
CTTCTGAGTGAAGTTGGTACCAAAATCATTGCATTCGACGTTACCCTGAA
AATGTCGACACTACTGCAGCAGCCAAAAAGCCACCAACACTACGACTCTT
ATATATTTGGAGAGGAAAAAACAGCCGGGAACGTGAAAGGAATTTCGTGT
CTCAACACTTCCCCGCACGTTTCGGTAAAAATCAATGGGTGAACGAGGTG
GAATAGCGCACGTTTTGGTGACCGCGTACAGCTCCGTGTAGCCACCCCCC
CTCCCGATCATGAGCCAATTCTGCCTGGTCATTTTGAATGCTATTGATTG
GGGTTGATCCCCGATCAACCGCGAAGAAGGTGCTACTGATCCTACCATCG
CCTTAGGACGATCCACACACCAGTGCGCATCTACAAGAGGCAGAGTCTTG
TTGGATACGACAGCAGTATTTCCTCCTTTGATGATCAGTAAATCGCATCA
GAATGGAGGCAGGCAGCGAACAAAATTAGCAGTACATCAGACTGTCAGTG
TAGAATCATCAACCCCGAATTTTTCGTCCCCGTCTCGGAAAAGGGAGCAG
CCAAGGAGATGAACGGCCTGAGGTCCGAATTGTCCGAACTCATGGAACGC
ATCAACCTTCAGGCGGACGTAGCCGCCGCGGTGGAGAAGGAATGCGCAGC
GCTCCGATCCACGGTGAGGACCTCAACAACAACGTGTATTTGTGCGTGTA
CGTATAGAGTATGTTAGCACTCGTTTTCGGGGAGAGGCGCGATAATTTCT
CTTGCCTGTAGCACCATCAGTGCTGATTCGAATGATTGAAGGCAGCTGTA
GATATATTTTCGGCTCAACACGAAAGCGCACACAAAGGGGGTCCGCACAC
GAGAATACGGTGGCCTTTTTTTTCCCCCTTTCTTATTCTTGCACACACAA
AAAGTGTCCTCCAAGGATGTTTGCGAAAAACTTCTACTTCGTACTTTGTT
TACCCGTGAAAGGCACTCAAACACATGCATGCGTCAGAGGAATGACAAAA
AGTCCACGCCTTTACGCCAGAGACGACACGCATCATGCACAGCTACGAGT
GGATGAACGAGGGATGTGGTATATGCATATAGCTAACAGGATTACCGCAT
GCACCGAGAGAATCGTGTGACGAGCGCGGTGTGTGTGAGTGGTGCTTGTG
GCGTACAACAGCAGCACCTTGGCGTCCGTGTTGGCATTGACCGGCGGTAG
ACTGAATGGTGGCGCTGTCGCTCAGAACAGCACGGAGTCCTGCCTCATTT
GACGTCGACGACAAGAACTGCGGTCTCGCAATCCGAGAAAGGTTTTGTCA
GCGGCCGTGGACAAACGACCCATTACTCCAGTGTGTGGTGCTCTTTCGTG
CTCTGCCGGAAGGTCGTGGTCGGGTGCAGTCTCAGACTAAGCGTTGTTGA
AAAGAACAACTGCAAGGTTTGAGCTATCGAAATGGGGCATAGGAGCTCTC
GTTGAGGTGTTGCAGTAAATTTAGTTTGCTCACGGAAACCCATTGAAAAT
ATTGTTCCCCTAGGATAATGTTTTTTTTTCTTCAACCTGAACGTATGCCA
GTTCTGCGGGAAGTCAGCGTGTTGTCGTAAATCCCTCGAAAGAGTTTGTG
AGTCTCAAACGCGGGATAATTAATGGGACACTATCTGTTGAGAAACGATG
CAGCCTACGTTGCTCCAAAAGGATAGGGAATGACGGTGAGCATCTCCTCT
CGCGCACTGCATGTGATTATTGTGTTCGCCGCCCCAAAAATCCGAGCTTA
TCAGTGCTAACCCCATAAGATAACCCGGAGATACAACCGCTATACATTAC
TTGGCTTCTCTTCTCCAAACCCCGAAAATTAAATTAAAAAAATAGGAGTG
ATATCGTGTAACCCTTTCAATGAAACCAAGCGGTTTGAAACGGTTAAGGT
ACATTTTGTTTCTGTATCCCTCTGTGACCTGTCGTTGTGCGGAAGGTACA
AGCGGGGCGCCACGCACGCGAAGTGGAGGACGAAAATTACCAAAAAACTT
TGAAGGAGACACTCAAGCGGGAGGAGGGTATGATGCGACTCAAGAGGCTC
CTGCATAAGGCCGAGGTTTGACAACATAACCTACAAATTACAAATGAAAT
GGTACTACGCACACACATTGTGGTTTTAACGCATTGTACATTGGGTAGAG
ACAAACAGAACAGCGAAGCCGTCTCCCTGTTGAATCGTTTCGGACAAATG
AAACTATCCGCATAATAAGCTAGTGTTGACGACACGCTCAGACAGATATC
CGTGAATGCATAGTGTACTACTATTGGTGTGTGTTTCTGGTGACCTTCGT
ACAGCTCAAACTGCGGTAACATTGAGCCACTGATTTCTGAAGCCGGACGT
TATATTTCCGACGGCAAGGATTTATCCCGACCGTTCCAAGGGGGGTTTCG
ATACTTCGTGTAATACGCGTTCATGCGTACCTCATTTGAAAATAGCTGAA
CGAACATCAGAAAACGTTTTACGAATCCTAGGGATCGATGCCATGCCATG
CCATGCCATGCGATACTATGCCCCCCCCTCCCCCCCACGCTAGTCTCGAG
ACGGAAAAAGCGAAGACGCCAAATTGGGGAAAAACATACTCTATGAGAGG
CCACGCGACCGAGTAGCTCGAAGCCGCCATCAAGCCGCCCACAAGTAGGG
TGTTGAGCCTCGTGGGTGCTCACGTATGTGTGAAGAGCCTGAAACAACAG
CAAGCACTCTCTGGGCAATCCGTTTTCCTATTCGAGACAGGAACAGTCCC
CGATAGCAACAACACAGCGCGAGCAGCGTAGCCTTTCTCTCCGAATTTTC
TCGATGTTGCTGTCGACCTTCACCTGTCTGTGACAGAACTGCAGCACGGG
AGCCTTCCTTTCTCCGAAGGTTCTTGTTGCTGCTGTCGACCTTCACCTGT
CTGTGACAGAACTGCACAGGCAGGGGTCCCCACACTCTTAACTTCCCGAA
CAACACCGGAAGCTATTTTTCATGTGCACAATGACGAGGGTATTTTTTGT
GCCCTTTCTTGAACTGCTAAACCGTTGGAACCCGCAGACCGACAAGACAG
ACATGGACGTGCGGATGACTCGCTTGCAGCGCGAGATGGACCGCTTGCGA
GCCACCCTCTGGTCCCATGGAATCAGTCCTGTTTCCGTCGCCGCCCCTGT
GAGCAAAAGCAACAGCAATGTCAATCCTGCATCAAGTGCTACGTGTACCG
GTAGGGTTGCCCCGCAGGGCGCCCACCGGGGGCGCCAAAACGGTCTTGGA
AGACGCCGAGATGACACACATCATCAACATAAACACCGCCAAAACAAGAA
ACTTGTTCCGATCTCGGGCCATCTCGGCAGCAGCGGCAGCAGCGGCAGCA
GCAGCGTCAATGGAAGTAGCGTCAGTTTTGGGGAAACTAGGGATTGGAAA
AACAACAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig912:48996..54654+

>mRNA_P-littoralis_Contig912.16.1 ID=mRNA_P-littoralis_Contig912.16.1|Name=mRNA_P-littoralis_Contig912.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=906bp|location=Sequence derived from alignment at P-littoralis_Contig912:48996..54654+ (Pylaiella littoralis U1_48)
AAGGTAAAAATCGACGACGGCACCTTCTTCGGTGGGGAGGACCTCGTCGA
GTGGCTATGCTCCAGGCTCAGGCAAGAGGTGGCCTTTGGCGCCGCGGTTT
GCAAAGAGCTGGAAGAAGAGCGCCTCGCTTCCGGCATAGAATTCGACAGT
CTTTCTGAAAACGAAAAAGAGTTAAAAAAAAGTGTCCAGGAAAAGGCGGT
GGAACTAGAGAAGGTTGAGAGACGCCTGGCGGACACAACGGAAGCTCTTC
AGTCTCAGAAACAGCTGCGCGTGAAGGAAATGCTCCAGAACCAGGGAGCA
GCCAAGGAGATGAACGGCCTGAGGTCCGAATTGTCCGAACTCATGGAACG
CATCAACCTTCAGGCGGACGTAGCCGCCGCGGTGGAGAAGGAATGCGCAG
CGCTCCGATCCACGGTACAAGCGGGGCGCCACGCACGCGAAGTGGAGGAC
GAAAATTACCAAAAAACTTTGAAGGAGACACTCAAGCGGGAGGAGGGTAT
GATGCGACTCAAGAGGCTCCTGCATAAGGCCGAGACCGACAAGACAGACA
TGGACGTGCGGATGACTCGCTTGCAGCGCGAGATGGACCGCTTGCGAGCC
ACCCTCTGGTCCCATGGAATCAGTCCTGTTTCCGTCGCCGCCCCTGTGAG
CAAAAGCAACAGCAATGTCAATCCTGCATCAAGTGCTACGTGTACCGGTA
GGGTTGCCCCGCAGGGCGCCCACCGGGGGCGCCAAAACGGTCTTGGAAGA
CGCCGAGATGACACACATCATCAACATAAACACCGCCAAAACAAGAAACT
TGTTCCGATCTCGGGCCATCTCGGCAGCAGCGGCAGCAGCGGCAGCAGCA
GCGTCAATGGAAGTAGCGTCAGTTTTGGGGAAACTAGGGATTGGAAAAAC
AACAGC
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