mRNA_P-littoralis_Contig912.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig912.31.1
Unique NamemRNA_P-littoralis_Contig912.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig912.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig912contigP-littoralis_Contig912:77211..79356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.4943821-CDS-P-littoralis_Contig912:77212..772921680791823.4943821-CDS-P-littoralis_Contig912:77212..77292Pylaiella littoralis U1_48CDSP-littoralis_Contig912 77213..77292 -
1680791823.5101187-CDS-P-littoralis_Contig912:79199..793561680791823.5101187-CDS-P-littoralis_Contig912:79199..79356Pylaiella littoralis U1_48CDSP-littoralis_Contig912 79200..79356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig912.31.1prot_P-littoralis_Contig912.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig912 77213..79356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig912.31.1

>prot_P-littoralis_Contig912.31.1 ID=prot_P-littoralis_Contig912.31.1|Name=mRNA_P-littoralis_Contig912.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
ALLETELKHYGSLSTHTEIRGLNLCTHLHTREAHSGQHSIELGRKGNTRS
RKGRAGSPKGEGGKYDNVSYVLARTIRSN
back to top

mRNA from alignment at P-littoralis_Contig912:77211..79356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig912.31.1 ID=mRNA_P-littoralis_Contig912.31.1|Name=mRNA_P-littoralis_Contig912.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2146bp|location=Sequence derived from alignment at P-littoralis_Contig912:77211..79356- (Pylaiella littoralis U1_48)
GCACTTTTGGAAACTGAGCTAAAGCATTACGGAAGCTTGAGCACACACAC
GGAGATCAGAGGGCTAAACTTGTGCACACACTTGCACACACGCGAGGCGC
ACTCCGGACAGCACTCTATCGAGCTCGGCAGGAAGGGGAACACACGCTCT
CGCAAAGGTCTGATGCGTGTTCCCATTTATGCGTGATGTTGGTCACACAA
TCGCTGCCAGCAATGCTGCCAGCTGAACACTCGGCCTTGTGGAGGATGTG
TGTGCGGGTTCCCCACCTGTGATAGTGGGGCAGAAACAACTGGGTACGGT
GGTGCCAGTAGCAGGAGGCATGAGTGCGGCTGAGGAGAGCAAGCCTGAAC
AGGCAGACCTCGTGGCAAGACATGTTTGGGATTGATTGCATGCCTTTTAT
TTTATTTTTATCACCCCCCCCCCCCCCGACTTCCGGCACTTCCTGTCTTC
TTTTCCCTTTTCGTTCCCCTGCTTCCTCTTTGTTTGGCGGCCTGTTTGTT
GTGTTTGTGTGCGAGTGCACTCCCTCAGTCTTTGTACCCTCCCTGTATCT
TCTTTTTTATTTTTTCATGTCTTTCGTCTATTGATCATATACTTCGTATA
TAGTTACTGGACCATCGCCCTGGTTTGCCTTTGCCTTGGTCTGTCATGGC
CCTGGGCCCTGGTTCGATGTACGAAGTACTTCGAAGTATATGGTTATGGT
TGAGGTTTGTCTTGGTTATTTTTTGTTTGTCGTACTGTTTCCAGTTTTCG
TTTTTCTTTCGAACCTGTCATTTTTTTTCTGTATTTTGTTTGGTACTCTG
GCCACCACAGATGGTACCCCAACGGTACCATATCTGATTTGGCTGTGGGT
GATCATAGTCCATTTATTTTATTTTTATTTTTTTCCTCCTAGCACGATAT
GTGCCTGGCTTGTGATCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGT
GAGAATCAACAGCTGCTTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCCTC
TGCTGAGCTAAGTACAGTAGTCGTGGAGTTCCTCCTTCCCAGGAGAGCGA
TGCACACGGCACACGTGAGACTAATGATGCGGATACGCCTGCTGCTGGTA
ATGGCAGTTACGTAGCCGGGTCATAGACACCAGAAGAGGAGTTCGGAGAC
GAGCTGGTGACGCTTCTCGGCACCCTCCTTCGACTGACTACAGAAGACTC
GAAGGCTTTGGTGGCCGCGATGTTGGAGCAGGCAACAAACGACCCCCTCC
CACATCCGCAACTGACTAGAACAGCAAGTATCCGAGGCTGCAGGAGAGTG
CGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGAAACAACCCAACCGGA
CGACAACTTGCGGCAATCAACAGGGCTTCCTCGTGTCTCAACTACTACTA
CTACAGTAGACAACCAGGTGTGTGTGCATTATGTTTGTGGAAGAGAGACC
TCTTGCGCCAGCGGTATGATATGACATACGGAGTATTCGGAATGAAACAT
TTCAACCCACACAACGGCAGCCGTAGGCAACGGCAGTGGTACACCTACGA
TATCACAAGAGACAACACGAGCTAAAGACAACAGCAGCATCGGTATTTGA
ACTAGGCCCTCTGCATTTCACGAGTCATCCTGCTATCATACGCACCCGCT
TCATAGATAGTTGAAGAAAAACTGCTCACACATGTGTCACCACACCAGAA
ATGCCTGCTGTACAGGGGTTGCTGGACACATGAACTGCACGAACAGCGGA
CGATCTGTAGTAGCATCGTGCGGCATGTTTGATGATGTTGTTGCCGATGC
TCGTGGGTAGTCTAGTACGATGTATTTAAAAATGATGCCATCAACGAAGT
TATCGAAATTGACGCTGACATAAAATCACACATAGATAGCAGTCAGTAGC
ACTCGAAAACATCGCTCGGGTGTGTTTGGGGTCTCGTAGTTCCAAGAGGC
TGTTGGAGTTTATTTTATGTCTCGATGTTTTTTCGGCTACTGAACATGCT
CAGTATGCTCAGTGAATAAAACACCCCCCCCACCCTCGCGTCCCCGAAAC
GCATGACCTGACAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGAAAAT
ACGACAACGTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAATTT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig912:77211..79356-

>mRNA_P-littoralis_Contig912.31.1 ID=mRNA_P-littoralis_Contig912.31.1|Name=mRNA_P-littoralis_Contig912.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig912:77211..79356- (Pylaiella littoralis U1_48)
GCACTTTTGGAAACTGAGCTAAAGCATTACGGAAGCTTGAGCACACACAC
GGAGATCAGAGGGCTAAACTTGTGCACACACTTGCACACACGCGAGGCGC
ACTCCGGACAGCACTCTATCGAGCTCGGCAGGAAGGGGAACACACGCTCT
CGCAAAGGGCGTGCTGGATCGCCAAAAGGAGAGGGAGGAAAATACGACAA
CGTGTCGTATGTCCTTGCTCGCACGATCCGCAGCAAT
back to top