mRNA_P-littoralis_Contig912.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig912.4.1
Unique NamemRNA_P-littoralis_Contig912.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig912.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig912contigP-littoralis_Contig912:4695..5702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size260
Hectar predicted targeting categorysignal peptide
Exons3
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.4089174-UTR-P-littoralis_Contig912:4694..47781680791823.4089174-UTR-P-littoralis_Contig912:4694..4778Pylaiella littoralis U1_48UTRP-littoralis_Contig912 4695..4778 -
1680791823.42321-UTR-P-littoralis_Contig912:5235..52771680791823.42321-UTR-P-littoralis_Contig912:5235..5277Pylaiella littoralis U1_48UTRP-littoralis_Contig912 5236..5277 -
1680791823.4587095-UTR-P-littoralis_Contig912:5700..57021680791823.4587095-UTR-P-littoralis_Contig912:5700..5702Pylaiella littoralis U1_48UTRP-littoralis_Contig912 5701..5702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791823.434652-CDS-P-littoralis_Contig912:5277..53271680791823.434652-CDS-P-littoralis_Contig912:5277..5327Pylaiella littoralis U1_48CDSP-littoralis_Contig912 5278..5327 -
1680791823.4481428-CDS-P-littoralis_Contig912:5618..57001680791823.4481428-CDS-P-littoralis_Contig912:5618..5700Pylaiella littoralis U1_48CDSP-littoralis_Contig912 5619..5700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig912.4.1prot_P-littoralis_Contig912.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig912 5278..5700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig912.4.1

>prot_P-littoralis_Contig912.4.1 ID=prot_P-littoralis_Contig912.4.1|Name=mRNA_P-littoralis_Contig912.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
MWQLMMMVVAVLVVLRTSPKYVFWAKTLGVYTKKLFTAPAAGV*
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mRNA from alignment at P-littoralis_Contig912:4695..5702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig912.4.1 ID=mRNA_P-littoralis_Contig912.4.1|Name=mRNA_P-littoralis_Contig912.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-littoralis_Contig912:4695..5702- (Pylaiella littoralis U1_48)
TGATGTGGCAACTAATGATGATGGTGGTGGCGGTGCTTGTTGTCCTGAGA
ACTTCTCCCAAGTACGTTTTTTGGGCAAAAACACCTGATGTGTGAAATTA
ATGAAGGGGTTTGCGGGGTGTTGATTTGTGTTGTTGAACTCTTCATCAGC
ATAATTGTTAATGTAGACATGTGTCCCCACGTAGAAGGAGCGACTGACTT
TTTCAACGTGACTCGTCAACAAAAATACAGCAGAAGTGCTTCGAAGTACT
GTAGTCAAATTACTTCTTGGGAGTATCACATGACAACGAAGTAGTTTGGT
GAAAATCCGTCGATCAATTACAATGGACGGCAGCAGCGATTATCTTGCTA
TCATGTACTTCGAAGTATTTCGTACTCGGAGTATATACGAAGAAGTTGTT
CACAGCACCAGCAGCAGGAGTTTAAGGTCACATCTTCTAGCCGTGTGCGG
GTAGTTCTCTCTCTCGGCTGTCGGAGCGGTGATCGAAGAATAAACGGGGC
GGTCGTTGAACATGGGCTCAGCTCTTGTCAAGTTATAAACGGATCGAAGA
AGTCATCATGTATGTGCATTTATTCTATTTCGACGGGTGAAACAACAATA
TATTTTTATCACAGACAGACAGACAGAGGAGGAGTTTTACAACCAAGCAG
TGAAGAACCTTCGACATCACCTCAATCTCACAGCCTGATACTTCGTACGA
GTATATGATATCGGTGCCTCACGATCGAAGCAAGCGCTTTGACTGAGGGG
CAGGGACGCTCACACGAGCGAAGAGAACCCATGCCCCGCAATACTTCGAA
GTACTCTGCTGCTGCTGCTGCTGCTGTGTGTCAGGGACCCGGGTGCAGTG
TAAAAAACAAAATTGGGCTGCCCGAAAAGCAAGGAAACAAAGCACGAGGA
GGTTGCGCCGCCCGCCGCAGGCACCTGGAAGTACTCAGTAACACAGCTGC
TGCGCACTGAAAAGTCGTGGGCTTCACACAACACAATACCCTCGACACAC
GACCGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig912:4695..5702-

>mRNA_P-littoralis_Contig912.4.1 ID=mRNA_P-littoralis_Contig912.4.1|Name=mRNA_P-littoralis_Contig912.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig912:4695..5702- (Pylaiella littoralis U1_48)
ATGTGGCAACTAATGATGATGGTGGTGGCGGTGCTTGTTGTCCTGAGAAC
TTCTCCCAAGTACGTTTTTTGGGCAAAAACACTCGGAGTATATACGAAGA
AGTTGTTCACAGCACCAGCAGCAGGAGTTTAA
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