mRNA_P-littoralis_Contig911.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig911.11.1
Unique NamemRNA_P-littoralis_Contig911.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.330e-13
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 1 
Query:  643 WLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEAL--RGASSGLSTAIGG 1077
            W  D   Q  ++ W DVTW + LA   G+NI VWEP+  +  +Q Y   +N  G+FL++K+D+MDEEG  W+HLL+     P+ A              NHF  + L  +A   F   + S + Q G     P A+   G  +G S+ +GG
Sbjct:   87 WFCDLAWQSAEK-WVDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYLG-NNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLA-------RNQNHNLNHFDRLQLGHDAAASFVDVVASAKLQLGTVTLMPSAIYTAGGEAGGSSLVGG 228
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BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.350e-13
Identity = 51/151 (33.77%), Postives = 76/151 (50.33%), Query Frame = 1 
Query:  643 WLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEAL--RGASSGLSTAIGG 1077
            W  D   Q  ++ W D+TW + LA   G+NI VWEP+  +  +Q Y   +N  G+FL++K+D+MDEEG  W+HLL+     P+ A              NHF  + L  +A   F   + S + Q G     P A+   G  +G S+ +GG
Sbjct:  176 WFCDLARQSAEK-WVDITWMSFLASEYGVNIMVWEPSAKHGTVQAYSG-NNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLA-------RNQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 317
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BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Match: A0A6H5KFV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.570e-13
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:  643 WLHDRVLQRVQQDWCDVTWFALLADSLGINIAVWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGS 1005
            WL D      ++ W DVTW + LA   G+NI VWEP+  +  +Q Y   +N  G+FL++K+D+MDEEG  W+HLL+     P+ A              NHF  + L  +A   F   + S
Sbjct:  315 WLCDLAWHSAEK-WIDVTWMSFLASEYGVNIMVWEPSAKHGTVQAYSG-NNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLA-------RNQNHNLNHFDRLQLGHDAVASFVEVVAS 426
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BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.230e-8
Identity = 42/130 (32.31%), Postives = 60/130 (46.15%), Query Frame = 1 
Query:  643 WLHDRVLQRVQQDWCDVTWFALLADSLGINIA---VWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAG 1023
            W  D   Q V+  W D+TW + LA   G+NI     W        +Q Y   +N  G+FL++K+D+MDEEG  W+HLL+     P+ A              NHF  + L  +A   F   + S + Q G
Sbjct:   10 WFCDLAWQSVK--WVDITWMSFLASEYGVNITGCPSWSR------IQTYSG-NNTAGMFLFEKEDKMDEEGDHWVHLLYREHANPWLA-------RNQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLG 123
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BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.480e-8
Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:  703 ALLADSLGINIAVWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLFHTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQAGG----PEAL--RGASSGLSTAIGG 1077
            +LLA   G+NI +WEP+  +  +Q Y   +N  G+ L++K+D+MDEEG  W+HLL+     P+ A              NHF  + L  +A   F   + S + Q G     P A+   G  +G S+ +GG
Sbjct:    2 SLLASEYGVNIILWEPSAKHGTVQAYSE-NNTAGMLLFEKEDKMDEEGDHWVHLLYREHANPWLA-------RNQNHNLNHFDRLQLGHDAVASFVEVVASAKLQLGTVTLMPSAIYTAGGEAGGSSMVGG 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig911.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJP9_9PHAE1.330e-1334.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW40_9PHAE1.350e-1333.77HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KFV5_9PHAE5.570e-1335.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2B4_9PHAE4.230e-832.31DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5KNV0_9PHAE4.480e-832.82DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig911contigP-littoralis_Contig911:60646..62070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1427
Hectar predicted targeting categoryother localisation
Exons1
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791822.542632-CDS-P-littoralis_Contig911:60645..615001680791822.542632-CDS-P-littoralis_Contig911:60645..61500Pylaiella littoralis U1_48CDSP-littoralis_Contig911 60646..61500 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791822.5586696-UTR-P-littoralis_Contig911:61500..620701680791822.5586696-UTR-P-littoralis_Contig911:61500..62070Pylaiella littoralis U1_48UTRP-littoralis_Contig911 61501..62070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig911.11.1prot_P-littoralis_Contig911.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig911 60646..61500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig911.11.1

>prot_P-littoralis_Contig911.11.1 ID=prot_P-littoralis_Contig911.11.1|Name=mRNA_P-littoralis_Contig911.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=285bp
MRLIERVDGHGNYMDEPQSSDKRTWLHDRVLQRVQQDWCDVTWFALLADS
LGINIAVWEPAGVNRDLQIYQAIDNMKGLFLYDKKDRMDEEGPQWLHLLF
HTMDKPFAAWAGVKPGEGPMMTHNHFSWMSLSGEAGERFKRAIGSGQQQA
GGPEALRGASSGLSTAIGGRGIKRKNTQPEQSSKTNDGGTSKKPVLVMSP
RTAEAKDKGKRAVGSGGRGKPVPGKSLVSKKQGGVQDKGKKQAAGGGSTG
GGGGRKSKDLPLLVCYDSDGNTGIHEDFSGRGSFA
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mRNA from alignment at P-littoralis_Contig911:60646..62070-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig911.11.1 ID=mRNA_P-littoralis_Contig911.11.1|Name=mRNA_P-littoralis_Contig911.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1425bp|location=Sequence derived from alignment at P-littoralis_Contig911:60646..62070- (Pylaiella littoralis U1_48)
CACCGCGTCTCTCAGCTCACAACCACTTAGGCTTGACTCACGAGCGAGCA
TCAGACCCCATGCGGAGTGTTTTTTTGGCGCTGCTGCTGGCGCATTTTTG
CCTGAGCTCCATGTCCACTGCTGCAGCCGACGGAGAGAGAGAGTTCCTCC
CGCAAAGTGCATACCTCCAAACACTTACTCCGCGAGAGCTCCTCCCCCGA
AGTGCTGTGCTCGGAAGAAAGGTATGTGAGCAAAGTGATCAGGTGCTTGG
GATGCGACTTAGTTGCGCAATGCCATCAGCGACGGCCCGCGATACGTTCA
CTCCACTCAGGGGGGCTAGGATACATCACACCCCTGGCGATGGTTCATGC
GCCTACCACGCTCTGGGTGGTTCACTGGCCAAAACGCTAGGATCTACAAG
GGCGAAAACAGTACCCGACTTGAAGCGTATCACATACACCGCCATCCAGC
ACACGTCGCATGGTACGACAGCAGCAGCGGCAGGAGCAGTAGACTAAGCC
TAAGTCAGCGCCAACAGAGTTGGGCGACAGCCAGGAGCCCTCGGATGCCC
AACTAGAACGGGCACGCTCGATGCGCTTGATCGAGAGGGTAGATGGGCAC
GGAAACTACATGGACGAACCTCAATCTAGCGACAAGAGGACGTGGCTGCA
TGATCGAGTACTGCAGCGAGTCCAGCAAGACTGGTGTGATGTTACCTGGT
TTGCTCTACTGGCCGATTCCCTCGGAATAAACATCGCCGTGTGGGAGCCA
GCAGGCGTCAATCGTGATCTGCAAATTTACCAGGCTATAGACAACATGAA
GGGTTTGTTCTTGTACGACAAAAAAGACCGCATGGATGAGGAGGGGCCCC
AATGGCTGCATTTGTTGTTCCACACGATGGATAAGCCCTTTGCCGCTTGG
GCCGGGGTCAAACCGGGGGAGGGACCCATGATGACACACAATCACTTCTC
CTGGATGTCGTTATCAGGGGAAGCAGGAGAGAGATTCAAACGCGCGATCG
GCTCAGGGCAACAACAGGCTGGAGGTCCCGAGGCATTGCGGGGTGCTAGC
TCGGGGCTGAGCACGGCAATAGGGGGGAGGGGTATCAAGAGGAAAAACAC
GCAGCCAGAGCAGTCGAGCAAAACAAACGACGGCGGCACATCCAAGAAAC
CGGTACTTGTGATGTCACCACGGACTGCCGAGGCTAAAGACAAGGGGAAG
AGGGCGGTGGGGAGTGGTGGTAGAGGGAAGCCGGTACCCGGGAAGTCGTT
AGTGTCGAAAAAACAAGGCGGGGTCCAAGACAAGGGCAAGAAGCAGGCGG
CGGGGGGTGGGAGCACGGGTGGTGGAGGGGGCAGGAAGTCGAAGGATCTT
CCACTTCTCGTATGTTACGATTCGGACGGCAACACCGGCATCCATGAAGA
TTTCTCAGGGCGTGGGTCGTTTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig911:60646..62070-

>mRNA_P-littoralis_Contig911.11.1 ID=mRNA_P-littoralis_Contig911.11.1|Name=mRNA_P-littoralis_Contig911.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=855bp|location=Sequence derived from alignment at P-littoralis_Contig911:60646..62070- (Pylaiella littoralis U1_48)
ATGCGCTTGATCGAGAGGGTAGATGGGCACGGAAACTACATGGACGAACC
TCAATCTAGCGACAAGAGGACGTGGCTGCATGATCGAGTACTGCAGCGAG
TCCAGCAAGACTGGTGTGATGTTACCTGGTTTGCTCTACTGGCCGATTCC
CTCGGAATAAACATCGCCGTGTGGGAGCCAGCAGGCGTCAATCGTGATCT
GCAAATTTACCAGGCTATAGACAACATGAAGGGTTTGTTCTTGTACGACA
AAAAAGACCGCATGGATGAGGAGGGGCCCCAATGGCTGCATTTGTTGTTC
CACACGATGGATAAGCCCTTTGCCGCTTGGGCCGGGGTCAAACCGGGGGA
GGGACCCATGATGACACACAATCACTTCTCCTGGATGTCGTTATCAGGGG
AAGCAGGAGAGAGATTCAAACGCGCGATCGGCTCAGGGCAACAACAGGCT
GGAGGTCCCGAGGCATTGCGGGGTGCTAGCTCGGGGCTGAGCACGGCAAT
AGGGGGGAGGGGTATCAAGAGGAAAAACACGCAGCCAGAGCAGTCGAGCA
AAACAAACGACGGCGGCACATCCAAGAAACCGGTACTTGTGATGTCACCA
CGGACTGCCGAGGCTAAAGACAAGGGGAAGAGGGCGGTGGGGAGTGGTGG
TAGAGGGAAGCCGGTACCCGGGAAGTCGTTAGTGTCGAAAAAACAAGGCG
GGGTCCAAGACAAGGGCAAGAAGCAGGCGGCGGGGGGTGGGAGCACGGGT
GGTGGAGGGGGCAGGAAGTCGAAGGATCTTCCACTTCTCGTATGTTACGA
TTCGGACGGCAACACCGGCATCCATGAAGATTTCTCAGGGCGTGGGTCGT
TTGCG
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