mRNA_P-littoralis_Contig911.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig911.1.1
Unique NamemRNA_P-littoralis_Contig911.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 3.180e-51
Identity = 97/130 (74.62%), Postives = 110/130 (84.62%), Query Frame = 3 
Query:  228 GGELPAGAAADVPVFDLSDKAIEDMWMRVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLELAGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQARGEV 617
            GGE+   +AA VP FDL++K +E++WMRVKKQL SVGKGG+KPSHVRSLN+LIAAHTLVKVK+NIPNADLEEVGLELAGKGG A   LGGG  DE+S  V +SVVTV PNQK ILFANTEFL +QARGE 
Sbjct:    4 GGEV---SAAAVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLA---LGGGDGDEASPAVGVSVVTVNPNQKVILFANTEFLASQARGET 127
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BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 9.920e-50
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 3 
Query:  162 LRETLGGRARTRGFGFFGMGGEGGELPAGAAADVPVFDLSDKAIEDMWMRVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLELAGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQARGEVF 620
            L   +GGRA  RG    GM   GGE+   + A VP FDL++K +E++WMRVKKQL SVGKGG+KPSHVRSLN+LIAAHTLVKVK+NIPNADLEEVGLEL GKGG  +   GGG  DE+S  V +SVVTV PNQK ILFANT+FL +QARGE  
Sbjct:   60 LSREMGGRATRRGCLAVGMN-TGGEV---STATVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGLKS---GGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGETL 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig911.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K1_ECTSI3.180e-5174.62CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE9.920e-5066.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig911contigP-littoralis_Contig911:2..3788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1961
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionRNA-binding, CRM domain
Ec32 orthologEc-05_006480.1
Cds size645
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.7918608-UTR-P-littoralis_Contig911:1..91680791821.7918608-UTR-P-littoralis_Contig911:1..9Pylaiella littoralis U1_48UTRP-littoralis_Contig911 2..9 +
1680791821.840657-UTR-P-littoralis_Contig911:2480..37881680791821.840657-UTR-P-littoralis_Contig911:2480..3788Pylaiella littoralis U1_48UTRP-littoralis_Contig911 2481..3788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.804257-CDS-P-littoralis_Contig911:9..2971680791821.804257-CDS-P-littoralis_Contig911:9..297Pylaiella littoralis U1_48CDSP-littoralis_Contig911 10..297 +
1680791821.8146138-CDS-P-littoralis_Contig911:1555..16721680791821.8146138-CDS-P-littoralis_Contig911:1555..1672Pylaiella littoralis U1_48CDSP-littoralis_Contig911 1556..1672 +
1680791821.8269079-CDS-P-littoralis_Contig911:2240..24801680791821.8269079-CDS-P-littoralis_Contig911:2240..2480Pylaiella littoralis U1_48CDSP-littoralis_Contig911 2241..2480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig911.1.1prot_P-littoralis_Contig911.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig911 10..2480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig911.1.1

>prot_P-littoralis_Contig911.1.1 ID=prot_P-littoralis_Contig911.1.1|Name=mRNA_P-littoralis_Contig911.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp
MVLPVEPAVGRGPSCCSSSYSHAALPRPHAVRGCTCGTCPAVTSAAAVAG
LLRETLGGRARTRGFGFFGMGGEGGELPAGAAADVPVFDLSDKAIEDMWM
RVKKQLFSVGKGGVKPSHVRSLNTLIAAHTLVKVKINIPNADLEEVGLEL
AGKGGAAAATLGGGVEDESSSGVDISVVTVKPNQKTILFANTEFLTAQAR
GEVFNNERPTAVPE*
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mRNA from alignment at P-littoralis_Contig911:2..3788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig911.1.1 ID=mRNA_P-littoralis_Contig911.1.1|Name=mRNA_P-littoralis_Contig911.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3787bp|location=Sequence derived from alignment at P-littoralis_Contig911:2..3788+ (Pylaiella littoralis U1_48)
GTTTCCATATGGTTCTACCCGTAGAGCCAGCAGTTGGGCGCGGCCCATCC
TGCTGCAGTTCTTCGTACAGCCACGCCGCCCTCCCCCGACCGCACGCTGT
CCGAGGTTGCACTTGCGGTACTTGTCCAGCAGTTACTTCTGCTGCTGCTG
TTGCTGGGTTGTTACGGGAGACGCTCGGAGGGCGAGCCAGAACCAGAGGC
TTCGGATTTTTTGGGATGGGTGGTGAGGGTGGTGAGCTGCCCGCTGGTGC
TGCTGCTGATGTGCCCGTCTTCGATCTGTCCGACAAGGCTATCGAGGTAC
GGAGTTATGACACTGTATGATACCGCCGTATGTACAAATCCAGAACGGCT
CCAACGATTACTTATGTTGTGAATGTTGTCTCGTCCTTGATCTCTCTCCT
CTTTTCTCTCTTTCGGGGTCATACTGTTGCTGGCTGTTAGTGCTGTATTG
CTGTGCACCGCCGCTGCCGACTCTTCCTCTATCGCTAGTTGTGGTGGTGG
GTGGCAATGCACGAGTTGCAGATCTTTACGTATTGACAGCAACAACGGCA
GCATGCCGATGGACGAGCCGGGCGACATGCCGATGAAATCTTGTACGGAA
GATACCACCCGCCGGCGGAGGGTCAAAGTTTGACGACCGAGTCGGCTGCT
GTATCATACTCGTACAGCAGTACACACAGCAGCAGTGACCCGGCAATAAA
GAAAGGGTGGTTTACTCGAGATAGCAGCCCATCACTTTGTACCAGTGAAT
ATGAATCACTTTTCCGTTTGTGCTCTGTGTGGCCAACCTGTCGGCTGCTG
TGTGTGTTTGTTGCACTTTTGCAAGAGTGTGTTATGAAGAGTTGAAAGTA
AGCGGTGTAGGGTTTGGAACCCCCTACAGAAGCTCTAGTGAGGGTTTGAA
ATGTGTAAGTACCCGAACGGGCAGAATTTTGGAATTTGGGGTAGGGTACG
ACACGTGTTACAATACTTACAGAACCTCCGGGTAGGGTCGGCGATGCTAT
CCCAGTATCCTTACCCGCACCTCGGCATTTGGATGAATCTCGTTTTCCGG
GTATTTGAGCCTATTTTCTATTTTCCAGGTATTTGACCCCCATTTTCAGG
GAATTTTGCCGTGTTACATATCCGCGTTGTTTCTCTGTGTTGTTGACCCA
TACCCCGTCGTGTTTTAGATGTTACAGAACTCACAGAATCTCCGGTTGCT
GTACAAAAATGTGTTGGAAGACTTGCAGAGGCCTCCGGATAGGGTCTCAA
ATGTGTTACAGAACCCAAAGAATCCCTGGGTACGGCTACTCGGGTATCTA
CACCGGGCGGTACTGTACTTCCCCTACTGCACGTAACCGTGCATTTTTGT
GTTTGCTCGTCCCATCCTCTGTTTGCGCCAGTGTGAATAATTCTCCGTGC
TCTTTCGGTCAGTCAGGTATAAAAGTGAGGCTGGTAAAAGAGGTGGACCA
ATCAAACCCCGTGCTTGTCTATATTTCTCGCTTCCTTTTCTCTCTCTGTC
CACGCTTTGTGGTGCGGTGGTTGTGGACGCCTGGTTTATCGTTTGCCCTC
ACAGGACATGTGGATGAGAGTCAAGAAGCAGCTCTTCAGCGTCGGTAAAG
GCGGGGTCAAGCCGAGCCACGTGCGATCGCTCAACACCCTCATAGCAGCT
CACACGTTGGTCAAGGTCAAGGTGCGTGCGCCTCATGAGACGCGTGCTGT
AGTTGGGGGGTATATAAGACTTGGGACTCCGAAGAAATCATTTTTGCTGT
GAATTTGGCATCCGCACGCGTCAGAGGACTCATCTATACGTGTTGCTATC
GGTATGTGTTGGGCGCATCAGTCGGGGGCACAACAGACGGTGGAGTAAGG
CAGCACAAGAGTGTTATTATATTTTTTGTGCGCAAGGAAAACAGAAAAAC
GGGGTAGAAGTCTCGCCGAATGGGTCGTCACCGGTGGCACGTCCGTACAT
TGACGACTCTCCCGCCCCCCCGCCACCCCCCCCAAAAAAGCGGGGAATGA
CTGCAACGCATTGTTTTCGTCTTTTCGGCACATCCAGCCAGCCAGCCTTG
AAACTCGCCAGCTGTTTTCCTCTCGCTTTGCCAGAAATGTTGAAAATTGT
ATCCTGGAAAGGAGACGACCTGCGATCTCGCTGAGACTAGGTATCATATG
TCCCCAAAAATGCTCAACAAGCTATGGGCTTTCCAGGAATGGCTTCTGTC
CTTCGTCTTTCTAACAACTCGACCCCCTGTTCTCGTCAGATCAACATCCC
GAATGCCGACCTGGAGGAGGTAGGACTCGAGCTGGCCGGGAAAGGCGGCG
CAGCAGCAGCGACTTTGGGGGGGGGGGTCGAGGATGAATCATCCTCGGGT
GTGGATATTTCAGTCGTAACCGTCAAACCGAATCAAAAAACCATCCTGTT
CGCCAACACGGAGTTCTTGACCGCTCAAGCGAGAGGAGAGGTGTTCAACA
ACGAGCGGCCAACAGCAGTACCTGAATGAAGGAAAGGTCGGAACGATTCT
GAAGTCTAAAAAGGGGAGCATATCTGTACTTTCTGCTTTTTTTCTCGCCT
CACAAAGTCCCCGTAGTGACTAGAGCCATTTTTTTACGTCGATCAGGCAT
CGCTGTGCTGCGATGCGTGGATGGGGCATAGTCAATCAATCAATCAATCA
ACCATGTTTTCACCGGCCAGGCACACCTTATGGTTGCCCAAAAGCGCAGG
AGGTAAGCTCACAGAAGTAGGGCATAATTACAGCAGTCCTTGAGGACGTG
TGTCCCCGGAGGCGGCGATGGCGGCAGCCGTAGAGATCGATCAAGCGGGG
CCCGTGCCTGCTCGATTGTACGGACAGATCGTTCGCAAGCTTGCAGTATC
GGAGCCTTTTACTTTCCTCTTCTGGCATGCTGCGCTCTCACCTGAGAAGC
CGTGTTGGACGGGGTAGACAGGGGGGGGAGGTTCCTCGTTTTCGGGTTTT
CGTGCTCCAAAATAATTTCGTCGTGAATGATTGTTGATTGGTTGGGTTTG
CTCAAAAAGAAGGTGGGACCGACTGCGGTGTTCGGTTCGAGAGAGAACAG
CAGCAGTATCGAGCGTTGGCGTTTGTCCCGCAAGAGCGGAGAGTGTCAGA
GTATTCGCTGCTGGAGTTCATTATTCCGCGCATCGGACAGGCTGGGTTTT
GCGTTTGACGTCTGGGTGCCCGCAGTTTTCCTGTTGGTCAACAAAATGTG
CCGCTGATTATTTATTGGCCGAAGCTCCCCGGGTGGTGAGAAACGTCAAC
CAGGGTCGAGACGTCCCGCATGTTTTTTTTTTTTCTGCCGGCTGGTTTTG
TGATTGTGGCTGCTTTCATCTGCAGGGTAGGGGAAGAAGGGGTGGGGGGT
ATTCACTCATGTCGTGTTCGTCTTCCTTTTGCGGGTTTATTCGGACTGTG
CGGCAATCGTTTTAGTCACCACGCGGATTTCCTCGTATAACTCTCGCAGG
CGATTTCAGAGAGAGTGCGAAAATAAAGAAAGCGTTCGTTGGGCAGGCCC
CAGAAACAGAAACAAAGCGACACAAAAGTACGTTGTTGCAAGTAAAACAT
GTGAGGGGGGCCCTTGGAAGGTGAGTGTTGACCTTCGCGTTTTGACCGTC
GTCTCCAACTTTTATTTTTTCGTTTTCCTTTCTTCAAAAATCACATCGAT
AACCCTGCTTGTCACGAGAGGATGAAAACAGCCGAGGGATGAAAGAGATT
AGGCCTGCGTGGCACACGTCACGGCGAACGATGCAAGAGCAGCAGCAGCA
GGCAGTGTGAAGCTTAAGCAGCAACGTCCATCAGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig911:2..3788+

>mRNA_P-littoralis_Contig911.1.1 ID=mRNA_P-littoralis_Contig911.1.1|Name=mRNA_P-littoralis_Contig911.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig911:2..3788+ (Pylaiella littoralis U1_48)
ATGGTTCTACCCGTAGAGCCAGCAGTTGGGCGCGGCCCATCCTGCTGCAG
TTCTTCGTACAGCCACGCCGCCCTCCCCCGACCGCACGCTGTCCGAGGTT
GCACTTGCGGTACTTGTCCAGCAGTTACTTCTGCTGCTGCTGTTGCTGGG
TTGTTACGGGAGACGCTCGGAGGGCGAGCCAGAACCAGAGGCTTCGGATT
TTTTGGGATGGGTGGTGAGGGTGGTGAGCTGCCCGCTGGTGCTGCTGCTG
ATGTGCCCGTCTTCGATCTGTCCGACAAGGCTATCGAGGACATGTGGATG
AGAGTCAAGAAGCAGCTCTTCAGCGTCGGTAAAGGCGGGGTCAAGCCGAG
CCACGTGCGATCGCTCAACACCCTCATAGCAGCTCACACGTTGGTCAAGG
TCAAGATCAACATCCCGAATGCCGACCTGGAGGAGGTAGGACTCGAGCTG
GCCGGGAAAGGCGGCGCAGCAGCAGCGACTTTGGGGGGGGGGGTCGAGGA
TGAATCATCCTCGGGTGTGGATATTTCAGTCGTAACCGTCAAACCGAATC
AAAAAACCATCCTGTTCGCCAACACGGAGTTCTTGACCGCTCAAGCGAGA
GGAGAGGTGTTCAACAACGAGCGGCCAACAGCAGTACCTGAATGA
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