mRNA_P-littoralis_Contig910.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig910.6.1
Unique NamemRNA_P-littoralis_Contig910.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig910.6.1 vs. uniprot
Match: A0A345MSI0_9VIRU (Uncharacterized protein n=1 Tax=CRESS virus sp. TaxID=2202563 RepID=A0A345MSI0_9VIRU)

HSP 1 Score: 169 bits (427), Expect = 1.330e-47
Identity = 104/278 (37.41%), Postives = 157/278 (56.47%), Query Frame = 1 
Query:    1 MPA-KRKADSTPSSSYKRARTTPKKKATRKMPKAT------KATQDKSGYAAIFKNPMLNHPPCQLTDSFRGATVPLVLNSTRSLMPNSVGNHAGLMFRPSLNNCFKNTTAVSGNDILVWDADYTSHPEYDSLADLQNTALRVRFLAVGIQLIYTGSADSRSGTITYGFSNSPETISPDGNSLPDMHMDSGIVPIKNGGNTFMLRPFDRPGFIPIGNMASEYFNGCILIVNGCDPSDILVRSKVYVEIIPDPASVLADSARPSPAGVDPKVPFQTHTV 813
            MPA KRKA+S   +  KR RT  KKK   +  K+       KAT++   Y  I  +PM  + P Q  D +RG T PL+L+   S   N+ G H G+ F+P +++ +  T + S    L W+A   SH EYD+L++L  +  + R +A+G  + Y G+ DSR+GTI+Y F+N  + ++  G+S  D+H DSGI+ I      F+ RPFD P F+        Y N   L   G +P D+LV++KV++E +P  +S LADS+ PSP   +  V + T++V
Sbjct:    1 MPAQKRKAESQRVTGSKR-RTVAKKKTPSRQTKSILSRTSPKATKETDLYRKILASPMSVNVPVQFPDQYRGRTCPLLLSQKLSFGKNTAGTHGGIRFQPRISSFWSATGSASLMSSLGWNATQ-SHAEYDALSNLSVSVSKYRIIAMGCSVQYVGANDSRAGTISYCFNNDMDELTLTGDSFADLHADSGILAIGTKPMEFVCRPFDHPRFVGEEASCESYINSLTLACEGVNPDDLLVKTKVFIEAVPQASSTLADSSTPSPVSGEVAVSYHTNSV 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig910.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A345MSI0_9VIRU1.330e-4737.41Uncharacterized protein n=1 Tax=CRESS virus sp. Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig910contigP-littoralis_Contig910:38839..39663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.5355198-CDS-P-littoralis_Contig910:38838..396631680791821.5355198-CDS-P-littoralis_Contig910:38838..39663Pylaiella littoralis U1_48CDSP-littoralis_Contig910 38839..39663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig910.6.1prot_P-littoralis_Contig910.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig910 38839..39663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig910.6.1

>prot_P-littoralis_Contig910.6.1 ID=prot_P-littoralis_Contig910.6.1|Name=mRNA_P-littoralis_Contig910.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=275bp
MPAKRKADSTPSSSYKRARTTPKKKATRKMPKATKATQDKSGYAAIFKNP
MLNHPPCQLTDSFRGATVPLVLNSTRSLMPNSVGNHAGLMFRPSLNNCFK
NTTAVSGNDILVWDADYTSHPEYDSLADLQNTALRVRFLAVGIQLIYTGS
ADSRSGTITYGFSNSPETISPDGNSLPDMHMDSGIVPIKNGGNTFMLRPF
DRPGFIPIGNMASEYFNGCILIVNGCDPSDILVRSKVYVEIIPDPASVLA
DSARPSPAGVDPKVPFQTHTVKQD*
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mRNA from alignment at P-littoralis_Contig910:38839..39663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig910.6.1 ID=mRNA_P-littoralis_Contig910.6.1|Name=mRNA_P-littoralis_Contig910.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig910:38839..39663- (Pylaiella littoralis U1_48)
ATGCCGGCTAAGAGGAAAGCAGACTCGACCCCTTCTTCGTCTTACAAGCG
TGCACGTACGACACCTAAGAAGAAAGCAACCCGTAAGATGCCAAAGGCAA
CTAAGGCCACTCAAGATAAAAGCGGATATGCAGCCATCTTCAAGAACCCT
ATGCTCAACCACCCACCGTGTCAACTAACAGATTCGTTCAGGGGAGCTAC
AGTACCACTTGTACTTAATTCGACACGTTCTCTTATGCCCAACAGTGTTG
GCAACCATGCAGGTCTTATGTTCAGACCATCTCTTAACAACTGCTTCAAG
AATACAACGGCAGTTTCAGGAAACGATATTCTTGTATGGGATGCCGATTA
TACATCCCACCCAGAGTATGACTCCCTTGCAGACCTACAAAACACCGCCC
TGAGGGTACGTTTTTTGGCGGTCGGGATTCAACTTATTTACACTGGATCT
GCTGATTCTAGATCAGGAACTATAACATATGGATTTAGTAACAGTCCCGA
AACAATATCGCCTGACGGTAACAGCCTTCCCGACATGCATATGGATTCCG
GGATTGTACCTATCAAAAACGGGGGTAACACATTTATGTTGAGACCGTTT
GATCGTCCAGGTTTTATCCCCATTGGAAACATGGCATCAGAATACTTTAA
TGGATGTATTCTTATTGTCAATGGATGCGACCCCAGTGATATTCTCGTTC
GCAGCAAAGTATACGTAGAGATTATACCGGATCCAGCCTCGGTACTTGCT
GATTCAGCACGACCTTCCCCTGCAGGAGTGGACCCAAAGGTCCCCTTCCA
AACTCATACGGTTAAGCAGGATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig910:38839..39663-

>mRNA_P-littoralis_Contig910.6.1 ID=mRNA_P-littoralis_Contig910.6.1|Name=mRNA_P-littoralis_Contig910.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig910:38839..39663- (Pylaiella littoralis U1_48)
ATGCCGGCTAAGAGGAAAGCAGACTCGACCCCTTCTTCGTCTTACAAGCG
TGCACGTACGACACCTAAGAAGAAAGCAACCCGTAAGATGCCAAAGGCAA
CTAAGGCCACTCAAGATAAAAGCGGATATGCAGCCATCTTCAAGAACCCT
ATGCTCAACCACCCACCGTGTCAACTAACAGATTCGTTCAGGGGAGCTAC
AGTACCACTTGTACTTAATTCGACACGTTCTCTTATGCCCAACAGTGTTG
GCAACCATGCAGGTCTTATGTTCAGACCATCTCTTAACAACTGCTTCAAG
AATACAACGGCAGTTTCAGGAAACGATATTCTTGTATGGGATGCCGATTA
TACATCCCACCCAGAGTATGACTCCCTTGCAGACCTACAAAACACCGCCC
TGAGGGTACGTTTTTTGGCGGTCGGGATTCAACTTATTTACACTGGATCT
GCTGATTCTAGATCAGGAACTATAACATATGGATTTAGTAACAGTCCCGA
AACAATATCGCCTGACGGTAACAGCCTTCCCGACATGCATATGGATTCCG
GGATTGTACCTATCAAAAACGGGGGTAACACATTTATGTTGAGACCGTTT
GATCGTCCAGGTTTTATCCCCATTGGAAACATGGCATCAGAATACTTTAA
TGGATGTATTCTTATTGTCAATGGATGCGACCCCAGTGATATTCTCGTTC
GCAGCAAAGTATACGTAGAGATTATACCGGATCCAGCCTCGGTACTTGCT
GATTCAGCACGACCTTCCCCTGCAGGAGTGGACCCAAAGGTCCCCTTCCA
AACTCATACGGTTAAGCAGGATTAA
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