mRNA_P-littoralis_Contig910.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig910.5.1
Unique NamemRNA_P-littoralis_Contig910.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig910.5.1 vs. uniprot
Match: A0A345MSH9_9VIRU (Triacylglycerol lipase n=1 Tax=CRESS virus sp. TaxID=2202563 RepID=A0A345MSH9_9VIRU)

HSP 1 Score: 243 bits (619), Expect = 1.400e-77
Identity = 130/242 (53.72%), Postives = 160/242 (66.12%), Query Frame = 1 
Query:    1 MDTSGAAFANQLMYFNNPRIQAYDDREFMDPQGFGSSPISHQVSMESYKPVDERRTNIAGFSLDRTRSDERHAIYHHKADKRVVIGLRGTVPSLLHPRDIKTDIALTLGQFKRTRHYKEAVQKFKEVHGHYGDNQHYHTAAHSLGAHTSLALALRFPKSIKSSVGFNTPGSLFSPLSTTIQKNIGQTRTQKKVFGTKKQKGTHIDYWNSLDPVGFFAATHRKGHFQKEHHSLNPHSLEAWLN 726
            MD SG AF+NQLMYFNNP I AYD  EF       S P+ H++S+ESYK   ERR NI GF  D   SD RHA+Y H ADKRV++G RGT P  L  RD+ +D ALT+GQFK T+HYK +V+K+++V   YG NQ YH + HSLGAH + ALA R+P S ++SVGFN PGSL   +S+ IQ NI QT TQKKV         H+ Y N+LDPV   +   +    QK HHS NPHSL++W N
Sbjct:    1 MDVSGQAFSNQLMYFNNPTIAAYDSSEFNPESQAESHPLHHEISVESYKSPSERRRNIVGFQYDDQLSDRRHAVYRHAADKRVIMGSRGTNPKEL--RDLYSDAALTIGQFKGTKHYKTSVKKYQQVQDKYGPNQSYHLSGHSLGAHNTYALANRYPNSTQTSVGFNQPGSLPGLVSSGIQ-NIYQTPTQKKV------DKFHVMYNNTLDPVSILSRHRKIQRNQKAHHSWNPHSLQSWYN 233
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig910.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A345MSH9_9VIRU1.400e-7753.72Triacylglycerol lipase n=1 Tax=CRESS virus sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig910contigP-littoralis_Contig910:34969..35703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons1
Cds size735
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.5035658-CDS-P-littoralis_Contig910:34968..357031680791821.5035658-CDS-P-littoralis_Contig910:34968..35703Pylaiella littoralis U1_48CDSP-littoralis_Contig910 34969..35703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig910.5.1prot_P-littoralis_Contig910.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig910 34969..35703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig910.5.1

>prot_P-littoralis_Contig910.5.1 ID=prot_P-littoralis_Contig910.5.1|Name=mRNA_P-littoralis_Contig910.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=245bp
MDTSGAAFANQLMYFNNPRIQAYDDREFMDPQGFGSSPISHQVSMESYKP
VDERRTNIAGFSLDRTRSDERHAIYHHKADKRVVIGLRGTVPSLLHPRDI
KTDIALTLGQFKRTRHYKEAVQKFKEVHGHYGDNQHYHTAAHSLGAHTSL
ALALRFPKSIKSSVGFNTPGSLFSPLSTTIQKNIGQTRTQKKVFGTKKQK
GTHIDYWNSLDPVGFFAATHRKGHFQKEHHSLNPHSLEAWLNHY*
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mRNA from alignment at P-littoralis_Contig910:34969..35703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig910.5.1 ID=mRNA_P-littoralis_Contig910.5.1|Name=mRNA_P-littoralis_Contig910.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig910:34969..35703- (Pylaiella littoralis U1_48)
ATGGATACATCGGGTGCCGCTTTCGCTAATCAGTTAATGTATTTCAACAA
CCCACGAATTCAGGCATACGACGATCGAGAATTCATGGATCCGCAAGGTT
TCGGTAGTTCCCCTATCAGTCATCAAGTTTCCATGGAAAGTTATAAACCT
GTAGATGAGCGAAGAACCAACATAGCAGGGTTCTCCTTGGATAGAACCAG
ATCCGACGAACGCCACGCTATTTACCATCACAAAGCGGATAAAAGAGTTG
TAATTGGTCTCAGAGGTACAGTCCCATCCCTCTTACATCCCCGAGACATA
AAAACAGATATTGCGCTTACATTGGGCCAATTTAAGCGAACTAGACATTA
CAAAGAAGCCGTACAAAAATTCAAAGAAGTTCACGGCCATTATGGTGATA
ATCAACATTATCATACCGCAGCTCATAGCCTCGGTGCACACACATCGTTG
GCTCTGGCGCTCAGATTCCCGAAAAGCATTAAGTCCTCGGTAGGATTTAA
TACACCGGGTTCTTTATTCTCTCCTTTATCAACAACGATACAGAAGAATA
TCGGACAAACGAGAACCCAAAAAAAGGTCTTCGGAACTAAGAAACAGAAA
GGTACGCACATAGACTATTGGAATTCATTAGATCCAGTAGGATTCTTTGC
AGCCACCCACCGGAAAGGACATTTCCAAAAAGAGCATCATAGCCTAAATC
CTCATTCTTTAGAAGCATGGTTAAACCATTATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig910:34969..35703-

>mRNA_P-littoralis_Contig910.5.1 ID=mRNA_P-littoralis_Contig910.5.1|Name=mRNA_P-littoralis_Contig910.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=735bp|location=Sequence derived from alignment at P-littoralis_Contig910:34969..35703- (Pylaiella littoralis U1_48)
ATGGATACATCGGGTGCCGCTTTCGCTAATCAGTTAATGTATTTCAACAA
CCCACGAATTCAGGCATACGACGATCGAGAATTCATGGATCCGCAAGGTT
TCGGTAGTTCCCCTATCAGTCATCAAGTTTCCATGGAAAGTTATAAACCT
GTAGATGAGCGAAGAACCAACATAGCAGGGTTCTCCTTGGATAGAACCAG
ATCCGACGAACGCCACGCTATTTACCATCACAAAGCGGATAAAAGAGTTG
TAATTGGTCTCAGAGGTACAGTCCCATCCCTCTTACATCCCCGAGACATA
AAAACAGATATTGCGCTTACATTGGGCCAATTTAAGCGAACTAGACATTA
CAAAGAAGCCGTACAAAAATTCAAAGAAGTTCACGGCCATTATGGTGATA
ATCAACATTATCATACCGCAGCTCATAGCCTCGGTGCACACACATCGTTG
GCTCTGGCGCTCAGATTCCCGAAAAGCATTAAGTCCTCGGTAGGATTTAA
TACACCGGGTTCTTTATTCTCTCCTTTATCAACAACGATACAGAAGAATA
TCGGACAAACGAGAACCCAAAAAAAGGTCTTCGGAACTAAGAAACAGAAA
GGTACGCACATAGACTATTGGAATTCATTAGATCCAGTAGGATTCTTTGC
AGCCACCCACCGGAAAGGACATTTCCAAAAAGAGCATCATAGCCTAAATC
CTCATTCTTTAGAAGCATGGTTAAACCATTATTAA
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