mRNA_P-littoralis_Contig910.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig910.10.1
Unique NamemRNA_P-littoralis_Contig910.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig910.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig910contigP-littoralis_Contig910:56538..58686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size313
Hectar predicted targeting categoryother localisation
Exons4
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.2671587-CDS-P-littoralis_Contig910:56537..565791680791821.2671587-CDS-P-littoralis_Contig910:56537..56579Pylaiella littoralis U1_48CDSP-littoralis_Contig910 56538..56579 -
1680791821.2788584-CDS-P-littoralis_Contig910:57006..570811680791821.2788584-CDS-P-littoralis_Contig910:57006..57081Pylaiella littoralis U1_48CDSP-littoralis_Contig910 57007..57081 -
1680791821.2911587-CDS-P-littoralis_Contig910:57696..578161680791821.2911587-CDS-P-littoralis_Contig910:57696..57816Pylaiella littoralis U1_48CDSP-littoralis_Contig910 57697..57816 -
1680791821.302969-CDS-P-littoralis_Contig910:58610..586791680791821.302969-CDS-P-littoralis_Contig910:58610..58679Pylaiella littoralis U1_48CDSP-littoralis_Contig910 58611..58679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.3152337-UTR-P-littoralis_Contig910:58679..586861680791821.3152337-UTR-P-littoralis_Contig910:58679..58686Pylaiella littoralis U1_48UTRP-littoralis_Contig910 58680..58686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig910.10.1prot_P-littoralis_Contig910.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig910 56538..58679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig910.10.1

>prot_P-littoralis_Contig910.10.1 ID=prot_P-littoralis_Contig910.10.1|Name=mRNA_P-littoralis_Contig910.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MCSTPPKSGKRGGGVSNDGECDEIPLFRKGSPVVAQGVNGDDANDIDVDV
EGGGEDRQEEVEKSRASPTPGALSAQPVNSPQKSSAGQTVRRSKRRLRIV
DN
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mRNA from alignment at P-littoralis_Contig910:56538..58686-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig910.10.1 ID=mRNA_P-littoralis_Contig910.10.1|Name=mRNA_P-littoralis_Contig910.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2149bp|location=Sequence derived from alignment at P-littoralis_Contig910:56538..58686- (Pylaiella littoralis U1_48)
AGGATTGATGTGCTCCACACCCCCGAAATCGGGGAAGAGAGGCGGCGGGG
TGTCCAATGACGGAGAATGTGATGAGGTGAGAATTTTTACACGCGACTTA
CCAAGCGAGGTGGCCTTACAAACTCAGAACAAGACGAACAGAGGGGACGC
TCGAAACGGGTTGTTTGTAGGTTGCTGTACACTGCTAGTATCCATCGACC
CTAAATACTCCGGTACATCTTATTCACGTATGTTGAGAGCCACGTTGGTT
CAAGACATAGGCGTCTGATAAGCGAGATATGTATACCCCCAAATGTAGTC
TATATTACATATTTTGACCCATCATGCCCGGTAGAACAGGCCGAAGAGTA
GACACGACGGGAGACGAGGCAGCCATACTGTGTACCTATGCAAATGATAT
CCGACACACCAAGTACCACAAACCAAAAATTGTAATGAAATCCCGCTTAA
ATGTCAAAACCAACTCATACGATTTTCAAATTTCGGGAAAACAGTTCAAA
CATTACCCCCCTCCTTTCACTCTCTCTGCCTCACTCTCCATCCTTCTCGT
GTCCAACGAAAAACAATGGATATACTATACCAAGTAGCAAAGAAAAGTTC
AACAGTGAACGGCAAGAATGGTACCGTACGTTGTAGATTATTCAAGGTCT
CGAAGACTCACCCTGGGAATGGTGTCTGACATATAGATCCCCCACGACAT
TAATATGCATCGTTAAGTGGGTCAAGTCACGGCCACGTAAACGAAGTACT
TCGTATTAACAATTGGGCGACATTTACACGCGTGTTTGGTAGATTTGCCC
CCCGGTCGATGCACCCATGTCACTACCGCGACTATAACACCGTCATTGCA
AAACCACGACACACGCACAGATCCCGTTGTTTAGGAAGGGCAGCCCCGTG
GTTGCCCAGGGCGTCAATGGAGATGACGCAAATGACATCGACGTGGACGT
TGAGGGGGGTGGCGAGGACCGTCAGGAGGAGGTGGAGAAGGTGAGACATC
TGGGGTGTTTCTCTCATGCGACCTGTTTTGTTGATGGCCGATCAAAGTGT
TCGGATGTATTTCAATGTAGAAGATGGCGTGATGGATAGGTACGTACACG
AATTCGCAGATATCTTCACGAATAAATCGTCCAACACGCCTCACAAGGGA
GTTCCATTTCAGATCGCTACCGCCCCCCCCTCACTCACTTTCACTCGGGC
TCTCTGTTCGACATCTTCTGAAGAAATGAAAGTGGTATTCTATGCCATGT
ATGCCACGAGATGCCAGCGATATCTGAACAACGTACGTGGTGCGTGCTCG
CAGCGTGTGTTTCCGCTGTCGTTGTTGTCTTCGATTTTCCCACCTCTTCG
TGTATCAGCAAGACGGTGCCTGTCCCCTCAACCCTAACGTGCAGTAGTGC
TGGGTTGTTCGAGGTTAGCCTTCCGCTTATGGTGTCATCCATCAACACCC
AAAACTCCCGATATTCGATCGATCGCCCCTACCTCGAGTACCTACCCCTC
GGTAGACGCTCGTTCTGTCTTGAAATCGACTGTTGTACAAAGCATATGTT
CTGTCTGTTCGATTCACTCGCCACTGTGCGTCGTCCTGTTACACCCATGT
TCCAGAGTCGAGCCTCGCCAACACCAGGAGCCTTGAGCGCGCAACCGGTG
AATAGTCCTCAGAAGTCTTCTGCCGGCCAGGTGAAAACTGTTTGTTATTG
GAAACGCTGCGGATCGCCAACCGCTTTACGCGAAGCACATGACCAATCCA
TGTAGACAGGTCTACAATTAGCTAGAGGCGTATCTTCATGTTGATACCTG
CCAGTTCAATGTTGAAGTCACGCCTGATCTGTCTGTGTCTGTCTCTCCCC
ATCCACTTCACTCTCACACTCTCCACACATTCACTCTTCGTCGTGGATCT
CACGCCGAAAGAATGAAAGCTGTTATTTTTGTGGCTCGAAAAAGAAAGGT
ATGCGATTAAACCTAGTATCTTTCCGAGGAACACATGGTAAGAGTAAATT
GTGAACAACGAGAGAAAATAGAGATATGCAGAACTGATTATCACGGGCCT
TCACACACGCGCCCTCCTACCGACGTTGTCATACTCGTCGCGCTCCCACA
CGTGCAGACTGTCCGGAGGTCAAAGAGACGCCTTCGTATCGTCGATAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig910:56538..58686-

>mRNA_P-littoralis_Contig910.10.1 ID=mRNA_P-littoralis_Contig910.10.1|Name=mRNA_P-littoralis_Contig910.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig910:56538..58686- (Pylaiella littoralis U1_48)
ATGTGCTCCACACCCCCGAAATCGGGGAAGAGAGGCGGCGGGGTGTCCAA
TGACGGAGAATGTGATGAGATCCCGTTGTTTAGGAAGGGCAGCCCCGTGG
TTGCCCAGGGCGTCAATGGAGATGACGCAAATGACATCGACGTGGACGTT
GAGGGGGGTGGCGAGGACCGTCAGGAGGAGGTGGAGAAGAGTCGAGCCTC
GCCAACACCAGGAGCCTTGAGCGCGCAACCGGTGAATAGTCCTCAGAAGT
CTTCTGCCGGCCAGACTGTCCGGAGGTCAAAGAGACGCCTTCGTATCGTC
GATAAC
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