mRNA_P-littoralis_Contig91.178.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.178.1
Unique NamemRNA_P-littoralis_Contig91.178.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig91.178.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.500e-20
Identity = 50/81 (61.73%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:   65 GAGA*VNPCERTAMALYRLGHGAGVRATAALFGVSDGWVCVTNEGFREEGLRNLTPRSL-VWPTRNEKDCIADAFEKLTGF 304
            G G   +PCERTAM LYRLGHGAG RATAALFGVSDGWV      F       L PR L  WPTRN++D I+ AFE+ TGF
Sbjct:   68 GRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGF 148
[Close]
BLAST of mRNA_P-littoralis_Contig91.178.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.170e-6
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 2 
Query:   56 KLMGAGA*VNPCERTAMALYRLGHGAGVRATAALFGVSDGWVCVTNEGFREEGLRNLTPRSLVWPTRNEKDCIADAFEK 292
            ++   G  ++PCER A+ L+R+GHG+GVRATA+ F +++G V            + L    + WP+  E+  I+ A+EK
Sbjct:   30 RVNNTGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEK 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI2.500e-2061.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA50_9PHAE2.170e-635.44DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:596366..597182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size461
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.184875-UTR-P-littoralis_Contig91:596365..5964681680791821.184875-UTR-P-littoralis_Contig91:596365..596468Pylaiella littoralis U1_48UTRP-littoralis_Contig91 596366..596468 +
1680791821.2219436-UTR-P-littoralis_Contig91:597133..5971821680791821.2219436-UTR-P-littoralis_Contig91:597133..597182Pylaiella littoralis U1_48UTRP-littoralis_Contig91 597134..597182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791821.198692-CDS-P-littoralis_Contig91:596468..5966711680791821.198692-CDS-P-littoralis_Contig91:596468..596671Pylaiella littoralis U1_48CDSP-littoralis_Contig91 596469..596671 +
1680791821.2103133-CDS-P-littoralis_Contig91:597027..5971331680791821.2103133-CDS-P-littoralis_Contig91:597027..597133Pylaiella littoralis U1_48CDSP-littoralis_Contig91 597028..597133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.178.1prot_P-littoralis_Contig91.178.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 596469..597133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.178.1

>prot_P-littoralis_Contig91.178.1 ID=prot_P-littoralis_Contig91.178.1|Name=mRNA_P-littoralis_Contig91.178.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MALYRLGHGAGVRATAALFGVSDGWVCVTNEGFREEGLRNLTPRSLVWPT
RNEKDCIADAFEKLTGFSYRGQRWYVSAGLPRSGSMWRCGSLAVVPTEQA
HR*
back to top

mRNA from alignment at P-littoralis_Contig91:596366..597182+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.178.1 ID=mRNA_P-littoralis_Contig91.178.1|Name=mRNA_P-littoralis_Contig91.178.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=817bp|location=Sequence derived from alignment at P-littoralis_Contig91:596366..597182+ (Pylaiella littoralis U1_48)
AGGCCCACCTTCGCGAAGCTGGTTACCGCATTGTACGGTACAACGGGTGT
GCGCCAAGCTGATGGGGGCGGGGGCCTGAGTCAACCCTTGTGAGCGGACA
GCGATGGCCCTCTATCGGCTTGGGCATGGGGCGGGTGTGCGTGCGACGGC
GGCACTGTTCGGTGTTTCTGATGGTTGGGTGTGCGTAACCAACGAAGGAT
TTAGGGAAGAGGGTCTGCGAAACCTGACGCCTCGCAGCTTGGTGTGGCCA
ACACGCAACGAAAAAGACTGCATAGCGGACGCGTTCGAAAAACTGACGGG
ATTCAGGTAATACGCCCAAGCACTTTAAGGCAAGACGTTGCAGAACTGGG
CAAGGTCGCTGGGCTCTCGCCTATTCCATTTCTGCAGCTTTTCCGAAGTT
ATTCTTTGAATTCCTGCGAGATGCAAGTTGTACATCCTGAGAGAATACGA
AAAAAACCCGATTCATTTTATATCAATTGCTACAGTATGTGACGATCGAA
GCCCAACCCTTTCAATTCTGGTTTGTCATGATGGTCCTTTAACTATTGTG
CACTGCCAGGGACGCCATTCTGGCAATGGATGGAAACCCTCCATCCGCTC
CAGTGGTCGAGACATGTCGGCTTACTACAACTGCATGAGATTCTACGTCG
TCACCTTGCTAGCTATCGTGGACAACGCTGGTATGTTTCCGCTGGATTGC
CGCGCTCGGGCTCGATGTGGCGATGCGGGAGTTTGGCGGTGGTGCCAACA
GAGCAAGCGCATCGCTGAGGAGCATTTCCTGCCCGAATGCCGCAGGACCC
AAGTGTGCCGCGATCGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig91:596366..597182+

>mRNA_P-littoralis_Contig91.178.1 ID=mRNA_P-littoralis_Contig91.178.1|Name=mRNA_P-littoralis_Contig91.178.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig91:596366..597182+ (Pylaiella littoralis U1_48)
ATGGCCCTCTATCGGCTTGGGCATGGGGCGGGTGTGCGTGCGACGGCGGC
ACTGTTCGGTGTTTCTGATGGTTGGGTGTGCGTAACCAACGAAGGATTTA
GGGAAGAGGGTCTGCGAAACCTGACGCCTCGCAGCTTGGTGTGGCCAACA
CGCAACGAAAAAGACTGCATAGCGGACGCGTTCGAAAAACTGACGGGATT
CAGCTATCGTGGACAACGCTGGTATGTTTCCGCTGGATTGCCGCGCTCGG
GCTCGATGTGGCGATGCGGGAGTTTGGCGGTGGTGCCAACAGAGCAAGCG
CATCGCTGA
back to top