mRNA_P-littoralis_Contig91.169.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.169.1
Unique NamemRNA_P-littoralis_Contig91.169.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5JFD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD7_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 6.650e-54
Identity = 120/237 (50.63%), Postives = 134/237 (56.54%), Query Frame = 2 
Query:  122 TFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAVDRHAATAAAREGFEGATGDNGFAGGWKAFVGEQQDSTDGPARLGGEGTHGTGQ---------------KSFVCRRREEARGQATTFLRGSVPPAVATAHVDQFLAAVVAQVGGAGATRTGGR-AAPFIANPGTVCLPSRTSSKRRRGAAEKLRERVAREPR 784
            TFDYLVLLFSD SHLCQCRTLQTLGL CR +W AM+HSP FRFHVGLLHEH LTE ARGTP  + PD   PRW                             + + G ++   DG    GG  +  T Q               +  V     +  GQA + L     P VA A VDQFLA V  Q GGAGAT TGGR AA F+AN GTV LP+RTS+KRRRGAAEK  E VAREPR
Sbjct:  297 TFDYLVLLFSDVSHLCQCRTLQTLGLFCRQVWAAMMHSPRFRFHVGLLHEHWLTEKARGTPLHDWPDVARPRW-----------------------------EKWTGRRERERDG----GGGXSSQTVQTVVLDLKEKGPTDQDRQVVYANVTKKLGQAASILSDKFSPTVAVARVDQFLATVNVQAGGAGATTTGGRGAALFMANSGTVRLPARTSNKRRRGAAEKSPEGVAREPR 500
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BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 8.380e-53
Identity = 123/223 (55.16%), Postives = 139/223 (62.33%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAV--DRHAA---TAAAREGFEGATGDNGFAGGWKAFVGEQQDSTDGPARLGGEGTHGTGQKSFVCRRREEARGQATTFLRGSVPPAVATAHVDQFLAAVVAQVGGAGATRTGGR-AAPFIANPGTVCLPSRTSSKRRRGAAEK 754
            EQRD K FDYLVLLFSDGSHLCQCRTLQTLGL CRH+W AM+HSP FRFH      H LTE ARGTPQQ+ PD   PRW+    +RHAA     AA EG EG  G  G  G WK+FVG  Q        L  +G     +K       ++  GQA + L     P VA A VDQFL  V  Q GG G T TGGR AA F+ANPGT+ LP+RTS+KRR GA E+
Sbjct:  596 EQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAMMHSPRFRFH------HWLTEKARGTPQQDWPDVARPRWVVSXSNRHAAGEVDGAAGEG-EG-EGVGGCGGRWKSFVGSSQTVQTVLLDLKEKGPTYQDRKVLYADVTKKL-GQAASILSDRFSPTVAVALVDQFLTMVNMQAGGVGTTTTGGRGAALFMANPGTLRLPARTSNKRRPGAVER 809
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BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.390e-41
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAVDRHAAT---AAAREGFEGATGDNGFAGGWKAFVGEQQ 451
            EQRD+K FDYLVLLFSDGSHLCQCRTLQTL L CRH+W AM++SP FRFHVGLLHEH LTE ARGTPQQ+ PD   PRW+  +RHAA     AA EG EG  G  G +G WK+FVG  Q
Sbjct:  497 EQRDDKAFDYLVLLFSDGSHLCQCRTLQTLRLFCRHVWAAMMYSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPRWVVSNRHAAREVDGAAGEG-EG-EGVGGCSGRWKSFVGSSQ 613
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BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.160e-40
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAVDRHAATAAAREGFEGATGDNGFAGGW 427
            EQRD K FDYL+LLFSDGS+LCQCRTLQTLGL CRH+W AM+HSP FRFHVGLLHEH LTE ARGTPQQ+ PD   PRW+  +RHAA    RE  +GA G+ G  GGW
Sbjct:  379 EQRDGKAFDYLILLFSDGSNLCQCRTLQTLGLFCRHVWAAMMHSPRFRFHVGLLHEHWLTEKARGTPQQDWPDVARPRWVVSNRHAA----RE-VDGAAGE-GEGGGW 480
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BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5K4E9_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.910e-39
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWI 343
            EQRD K FDYLVLLFSDGSHLCQCRTLQTLGL CRH+W A++HSP FRFHVG+LHEH LTE ARGTPQQ+ PD   PRW+
Sbjct:  155 EQRDGKAFDYLVLLFSDGSHLCQCRTLQTLGLFCRHVWAAIMHSPRFRFHVGVLHEHWLTEKARGTPQQDWPDVARPRWV 234
[Close]
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.720e-38
Identity = 70/99 (70.71%), Postives = 82/99 (82.83%), Query Frame = 2 
Query:  113 DNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAV-DRHAATAAAREGFEGATGD 406
            D +TFDYLVLLFSDGSHLCQCRT QTLGL CRH+W AM++SP FRFHVGLLH+H LTE ARGTP Q+ PD   PR++ + DRHA+TA A+E FEGA G+
Sbjct:  567 DGRTFDYLVLLFSDGSHLCQCRTFQTLGLFCRHVWAAMMYSPRFRFHVGLLHQHWLTEKARGTPLQDWPDVARPRFVVISDRHASTAGAKERFEGAAGE 665
[Close]
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5L2X8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.190e-38
Identity = 68/95 (71.58%), Postives = 73/95 (76.84%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSP--------DFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRWIAVDRHAA 364
            EQRD K FDYLVLLFSDGSHLCQC TLQTLGL CRH+W AM+HSP         FRFHVGLLHEH LTE ARGTPQQ+ PD   PRW+  +RHAA
Sbjct:  224 EQRDGKGFDYLVLLFSDGSHLCQCLTLQTLGLFCRHVWAAMMHSPRFTFQIGLPFRFHVGLLHEHWLTEKARGTPQQDWPDVARPRWVVSNRHAA 318
[Close]
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.280e-27
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTP 304
            EQRD K FDYLVLLFSDGS LCQCRTLQTLGL CRH+  AM+HSP FRFHVGLLHEH LTE ARGTP
Sbjct:  875 EQRDGKAFDYLVLLFSDGSRLCQCRTLQTLGLFCRHVLAAMMHSPRFRFHVGLLHEHWLTEKARGTP 941
[Close]
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.290e-18
Identity = 80/228 (35.09%), Postives = 108/228 (47.37%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE*PDAVAPRW-IAVDRHAATAAAREGFEGATG-----DNGFAGGWKAFVGEQQDSTD-----GPARLGGEGTHGTGQKSFVCRRREEARGQATTFLRGSVPPAVATAHVDQFLAAVVAQVGGAGATRTGGRAAPFIANPGTVCLP-SRTSSKRRRGAAE 751
            E  D     Y+VL  +DGSHLC CRTLQ LGL CRH W AM  S  ++FHVG+L++H L E  R  P  E P+   P W +A++  A +   ++    ATG       G  GG  A  G Q D+ +        +L   G     ++       +EA    +  +  +VPP    A V QF   V        A+R G  A   +ANP  V LP SR + KR+R + E
Sbjct:  638 ENHDGTDKRYIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQHWLAEQGR-KPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVE-TVPPEALRALVRQFKQGVHQ------ASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHE 857
[Close]
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.180e-14
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  104 EQRDNKTFDYLVLLFSDGSHLCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTE 286
            E R  +   Y+V    DGSH+C CRTLQ LGL CRH W AM  SP F+FHVG+L+ H LTE
Sbjct:  354 ESRYGRVMRYIVCSMQDGSHICSCRTLQELGLCCRHFWQAMRLSPKFKFHVGILNRHWLTE 414
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JFD7_9PHAE6.650e-5450.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ2_9PHAE8.380e-5355.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LU83_ECTSI1.390e-4168.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3E8_9PHAE2.160e-4070.37SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4E9_9PHAE3.910e-3978.75SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JNB0_9PHAE2.720e-3870.71SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L2X8_9PHAE4.190e-3871.58SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LMZ3_9PHAE1.280e-2783.58SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJG6_9PHAE3.290e-1835.09SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JBU5_9PHAE8.180e-1457.38SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:562313..563265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size953
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue2.86e-34
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size303
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791820.610306-UTR-P-littoralis_Contig91:562312..5629491680791820.610306-UTR-P-littoralis_Contig91:562312..562949Pylaiella littoralis U1_48UTRP-littoralis_Contig91 562313..562949 -
1680791820.6350315-UTR-P-littoralis_Contig91:563252..5632651680791820.6350315-UTR-P-littoralis_Contig91:563252..563265Pylaiella littoralis U1_48UTRP-littoralis_Contig91 563253..563265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791820.6226864-CDS-P-littoralis_Contig91:562949..5632521680791820.6226864-CDS-P-littoralis_Contig91:562949..563252Pylaiella littoralis U1_48CDSP-littoralis_Contig91 562950..563252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.169.1prot_P-littoralis_Contig91.169.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 562950..563252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.169.1

>prot_P-littoralis_Contig91.169.1 ID=prot_P-littoralis_Contig91.169.1|Name=mRNA_P-littoralis_Contig91.169.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MARNARQRWAARSSISTPSLATSSTSSEFCEQRDNKTFDYLVLLFSDGSH
LCQCRTLQTLGLLCRHLWGAMLHSPDFRFHVGLLHEHRLTETARGTPQQE
*
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mRNA from alignment at P-littoralis_Contig91:562313..563265-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.169.1 ID=mRNA_P-littoralis_Contig91.169.1|Name=mRNA_P-littoralis_Contig91.169.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=953bp|location=Sequence derived from alignment at P-littoralis_Contig91:562313..563265- (Pylaiella littoralis U1_48)
GGAGGGAGGGTGGATGGCCCGGAACGCGCGGCAGCGTTGGGCCGCACGTT
CAAGTATATCGACGCCAAGCTTGGCGACGTCATCGACGTCTTCAGAGTTT
TGCGAGCAGCGTGACAACAAGACCTTCGACTACCTCGTCTTGCTCTTCTC
CGACGGTAGCCATCTGTGCCAGTGCCGCACGCTCCAAACTCTCGGGCTCC
TTTGCCGCCACTTGTGGGGGGCGATGCTGCACAGCCCCGACTTCCGATTC
CACGTCGGCCTCCTGCATGAGCACCGGCTGACGGAAACAGCCCGAGGAAC
ACCACAGCAGGAATGACCGGATGCCGTCGCGCCTCGATGGATCGCGGTCG
ATCGCCACGCGGCGACAGCTGCGGCTAGGGAGGGCTTCGAAGGGGCGACG
GGAGATAACGGCTTCGCCGGGGGTTGGAAGGCTTTCGTGGGGGAGCAGCA
AGACAGTACAGACGGTCCTGCTAGACTTGGAGGAGAAGGGACCCACGGCA
CAGGACAAAAAAGTTTTGTATGCCGACGTCGCGAAGAAGCTCGGGGGCAA
GCTACGACTTTTTTGCGTGGCAGTGTTCCACCGGCAGTCGCTACGGCCCA
CGTAGACCAGTTTCTTGCGGCCGTCGTGGCGCAAGTAGGCGGAGCAGGCG
CGACAAGAACTGGGGGTCGGGCGGCCCCTTTCATCGCCAACCCTGGCACT
GTCTGCCTGCCCTCTCGGACAAGTAGTAAAAGACGACGAGGTGCGGCAGA
AAAATTACGAGAGCGGGTAGCGAGGGAGCCGCGACGGGTCAAGCACTTAG
TTTCGTGATAGCCAAGTAAATTTCCTGTAACACGGAGGCGGCCATAGGCG
TACGGGTCGGGAGCTTTCCTTTTTTTTTTTTCTGGCGGCTTATTGTGGCT
CAGTATATTGTTATTCGTTTTGTCTTCCGTGGCGTTGGCGTTTACCGGTG
CCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:562313..563265-

>mRNA_P-littoralis_Contig91.169.1 ID=mRNA_P-littoralis_Contig91.169.1|Name=mRNA_P-littoralis_Contig91.169.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig91:562313..563265- (Pylaiella littoralis U1_48)
ATGGCCCGGAACGCGCGGCAGCGTTGGGCCGCACGTTCAAGTATATCGAC
GCCAAGCTTGGCGACGTCATCGACGTCTTCAGAGTTTTGCGAGCAGCGTG
ACAACAAGACCTTCGACTACCTCGTCTTGCTCTTCTCCGACGGTAGCCAT
CTGTGCCAGTGCCGCACGCTCCAAACTCTCGGGCTCCTTTGCCGCCACTT
GTGGGGGGCGATGCTGCACAGCCCCGACTTCCGATTCCACGTCGGCCTCC
TGCATGAGCACCGGCTGACGGAAACAGCCCGAGGAACACCACAGCAGGAA
TGA
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