mRNA_P-littoralis_Contig91.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.108.1
Unique NamemRNA_P-littoralis_Contig91.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig91.108.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.920e-15
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 SASRLLLHDDIEPLATQQAKEVNMFERRGYKVTVVFDGATPPAKQDTSQGRMKRREESASAARRLAVQGGASASEVNRMAS 243
            +A  LLLHDD+ PL  + A EV+ FE RG+KVTVV DG+TPPAK+ TS+ R  +RE +AS AR L   GG   +E+N+ AS
Sbjct:   46 AARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGR-LTEINKKAS 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE6.920e-1554.32Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:359933..360182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0K2
PFAMsXPG_I,XPG_N
Model size250
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-11
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
Cds size249
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791818.9080734-CDS-P-littoralis_Contig91:359933..3601821680791818.9080734-CDS-P-littoralis_Contig91:359933..360182Pylaiella littoralis U1_48CDSP-littoralis_Contig91 359934..360182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.108.1prot_P-littoralis_Contig91.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 359934..360182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.108.1

>prot_P-littoralis_Contig91.108.1 ID=prot_P-littoralis_Contig91.108.1|Name=mRNA_P-littoralis_Contig91.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
SASRLLLHDDIEPLATQQAKEVNMFERRGYKVTVVFDGATPPAKQDTSQG
RMKRREESASAARRLAVQGGASASEVNRMASAA
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mRNA from alignment at P-littoralis_Contig91:359933..360182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.108.1 ID=mRNA_P-littoralis_Contig91.108.1|Name=mRNA_P-littoralis_Contig91.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=250bp|location=Sequence derived from alignment at P-littoralis_Contig91:359933..360182- (Pylaiella littoralis U1_48)
TCAGCGAGTCGTCTGTTGTTGCACGATGATATCGAGCCTTTGGCAACGCA
GCAGGCCAAGGAGGTAAACATGTTCGAGCGCCGCGGGTACAAGGTGACGG
TCGTGTTTGACGGTGCCACACCACCAGCTAAACAAGACACCTCTCAGGGG
AGAATGAAGAGGCGGGAGGAGAGTGCGTCGGCGGCCCGCCGTCTCGCCGT
ACAAGGTGGAGCTTCTGCTTCTGAAGTCAACAGGATGGCTTCCGCTGCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:359933..360182-

>mRNA_P-littoralis_Contig91.108.1 ID=mRNA_P-littoralis_Contig91.108.1|Name=mRNA_P-littoralis_Contig91.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig91:359933..360182- (Pylaiella littoralis U1_48)
TCAGCGAGTCGTCTGTTGTTGCACGATGATATCGAGCCTTTGGCAACGCA
GCAGGCCAAGGAGGTAAACATGTTCGAGCGCCGCGGGTACAAGGTGACGG
TCGTGTTTGACGGTGCCACACCACCAGCTAAACAAGACACCTCTCAGGGG
AGAATGAAGAGGCGGGAGGAGAGTGCGTCGGCGGCCCGCCGTCTCGCCGT
ACAAGGTGGAGCTTCTGCTTCTGAAGTCAACAGGATGGCTTCCGCTGCT
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