mRNA_P-littoralis_Contig91.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.102.1
Unique NamemRNA_P-littoralis_Contig91.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig91.102.1 vs. uniprot
Match: A0A6H5JLC6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLC6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.530e-25
Identity = 122/293 (41.64%), Postives = 140/293 (47.78%), Query Frame = 2 
Query:  101 DCTRRQ--RQGTSYNSPIQVVQAAREDLVEH--GDGVGGGCDIGAAASAAVVDHRTWRDDPVVGEYLKLERQRRHKGSTDSR-IPGRDGLRRWRSNSIPQHYMRTKSAGLLGASTKLPPLERDASGGRGXXXXXXXXRSGAGEXXXXXXXXXXGPLGSFARGCGGLRNITSAPTTVGSFYPPSTSVVNVAVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGCTXXXXXXXXXXXXXXXXXXXXGYTTFFPVDLAADRAAGLSISRCSAERSLDWSANSKKAFA 964
            DC++    R+ +SYNSPIQVVQAAREDL+E   G+             AA   H T  DDP+ GEYLK+      KG TDS  I  R G  RWRSNS+P   MRTKSAG+LGAS KLPPLERD SG  G        R G   XXXXX        G F RG      ITSAP+T  +    S+S    +  P            XXXXXX                  RGC                         F PV+  ADRAAGLSI+R S +RSLDWSA + K  A
Sbjct:  723 DCSKNSGLRRESSYNSPIQVVQAAREDLMERRKGNXXXXXXXXXXXGVAAAQHHLTRPDDPITGEYLKMGL----KGLTDSSSIASRSGFNRWRSNSMPLQCMRTKSAGVLGASPKLPPLERDLSGVGGAGLYGGGQRGGEXXXXXXXASG-----GRFTRG------ITSAPSTSSAAAQYSSSPFEASADPGAIEGCGGAPAAXXXXXXAM----------------RGC-------------------------FRPVERTADRAAGLSIARPS-DRSLDWSAAADKGEA 958
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLC6_9PHAE1.530e-2541.64Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:340614..344819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT93
PFAMsPkinase
Model size3180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.57e-09
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
DescriptionMAP kinase kinase kinase activity
Cds size1071
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791818.6864207-UTR-P-littoralis_Contig91:340613..3423311680791818.6864207-UTR-P-littoralis_Contig91:340613..342331Pylaiella littoralis U1_48UTRP-littoralis_Contig91 340614..342331 -
1680791818.7186818-UTR-P-littoralis_Contig91:343402..3434601680791818.7186818-UTR-P-littoralis_Contig91:343402..343460Pylaiella littoralis U1_48UTRP-littoralis_Contig91 343403..343460 -
1680791818.730977-UTR-P-littoralis_Contig91:344004..3442131680791818.730977-UTR-P-littoralis_Contig91:344004..344213Pylaiella littoralis U1_48UTRP-littoralis_Contig91 344005..344213 -
1680791818.7446349-UTR-P-littoralis_Contig91:344695..3448191680791818.7446349-UTR-P-littoralis_Contig91:344695..344819Pylaiella littoralis U1_48UTRP-littoralis_Contig91 344696..344819 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791818.7056494-CDS-P-littoralis_Contig91:342331..3434021680791818.7056494-CDS-P-littoralis_Contig91:342331..343402Pylaiella littoralis U1_48CDSP-littoralis_Contig91 342332..343402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.102.1prot_P-littoralis_Contig91.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 342332..343402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.102.1

>prot_P-littoralis_Contig91.102.1 ID=prot_P-littoralis_Contig91.102.1|Name=mRNA_P-littoralis_Contig91.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=357bp
MRTKSAGLLGASTKLPPLERDASGGRGGPGGGGGGRSGAGEGGAAARAGE
GGPLGSFARGCGGLRNITSAPTTVGSFYPPSTSVVNVAVAPPAAPSAAAS
PASAAAVASAAAACASSSPAAASVEDARGCTPPTPTPAAAAGAAVLSSPG
GGYTTFFPVDLAADRAAGLSISRCSAERSLDWSANSKKAFATDSSSPREL
GGGGGRGAFRSPSSLAPIIVKPLPLVTAAAEAAGGAALTSLASSDSLGRR
GGFGSGAASCVGGGLGSASGFSSGFTPGAAHAASSSGDKSGFLSCSTTGS
AGGSTAVVGAVGVAAGGRVAHAFVARSPPGGRFLAAASSTGSSGGGGSSS
RNGKQH*
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mRNA from alignment at P-littoralis_Contig91:340614..344819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.102.1 ID=mRNA_P-littoralis_Contig91.102.1|Name=mRNA_P-littoralis_Contig91.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4206bp|location=Sequence derived from alignment at P-littoralis_Contig91:340614..344819- (Pylaiella littoralis U1_48)
CGGCGGCGGCGGTAACGGTAGCCGGGCTAGTATCACCGCCGCCCCCAGCC
ACGGCGGGGGGGGCGACTTCAATGGCGGCGGTGGCGGCGGCGGCGACAGT
GACTGCACAAGAAGACAACGTCAGGTAACAACAATCCGGATCGCGGCGGG
CCAATGCTCTAACGGTGCAATGTTTGTTTGTTATGTGTGTTTGTTTGTTC
GGACACATGGAAACCCTGAGGAAGTACAGCAGTACAACCATATTTTTGTA
TTTTTGTCTTTTGACGACACGCGACACTTCTTTTCGTGACTCGTGGAGGG
GGGCGCAAAAACGAACGACACACAGGACCCGCGGGTGGATGGACGGAGTC
ACAACCTCCTCATATTTTATATTTGTCCTCGTGCTATCCCTACTTCTACT
GTACCTGACTTGAGACCCTCTCCGTTGTTGGTCTTCCAGATCCGGTTTTT
TCATGATACTTCATCTAACATGAATTCCTGGTATTTGCATATCTCTCTTT
CTCTGCCTCTCCATCCTTCCCTTTCTCTCTCCCTCTCTCCCTCTCTCTCT
TTCTCTCTCTCTCTCTCTCCCTCTTTCCGTCTCTCGCGCGCGCTCGTACA
CACCAGGGAACATCGTACAACAGCCCGATCCAAGTCGTGCAGGCGGCCAG
GGAAGACTTGGTGGAGCACGGGGACGGTGTTGGAGGGGGGTGCGACATTG
GGGCAGCAGCGTCAGCAGCAGTGGTAGACCACCGAACGTGGCGCGACGAC
CCCGTCGTAGGGGAGTACCTCAAGCTGGAGAGACAAAGGCGGCACAAGGG
TTCCACAGACAGCAGGTGAAGGGGATTTGGAAGGGGGGGTTGGGGGGGGG
AGGGGGGGAGTACGAGAAACGAATGGACATCAGAATAAAAAAAAAGTGGG
AGAGCGAGGTGGAGAGAAAGGGAGGGAGGGGAAGGAACGGGGAAGGAAGG
GAGGTGGATAGTAGGTTGGGCGATCGGTTGGTCGATCGCTATCGGGTTGC
CAACCCGATCCTCATCTCCCCCCTCCTCCTCCTCCTCCTCCTTCTCCTTA
TCCGTCGCACCCGACCGGGCATGTCCTAGGTGAAAACCCCGCAGAGTAAG
CTTTCAGAAGAAATGACACTGTGAACCTCTCCCCGCCCCTCGTCCCTGCC
CCTTGTTCCGTGCCGAGCGCACGGGTTTCAATCAAAATTGGCGTGTTTTT
CCTAATCAAACGGGTTACACTCTTACCTCTCGCCCCATCTCTCTCTCTCC
CTCTCTCTCTCCACCTACATGTCGATCGGAACCGAGTTATCACAACAGTC
TTGCTGTACACCCGCCGGTTCGTTGGGCGTCTCGTTGTTTTTCTGTCTTC
CACACGCAGAATCCCGGGTCGTGACGGGCTTAGGCGCTGGAGGTCTAATT
CGATACCGCAGCATTACATGCGCACAAAGAGCGCGGGCCTGCTGGGAGCG
TCGACCAAGCTTCCGCCACTGGAGCGAGACGCTTCCGGTGGCAGGGGCGG
ACCGGGCGGCGGGGGCGGCGGGCGTTCAGGTGCGGGCGAAGGCGGGGCAG
CAGCAAGAGCAGGAGAAGGGGGGCCACTCGGGAGCTTCGCGAGGGGCTGC
GGGGGGCTTCGCAACATAACCTCCGCCCCGACAACGGTGGGATCTTTTTA
CCCTCCTTCTACTTCTGTTGTTAATGTTGCTGTCGCGCCTCCCGCCGCCC
CTTCGGCTGCTGCTTCGCCTGCTTCGGCGGCGGCGGTGGCATCGGCGGCG
GCGGCATGCGCATCATCATCGCCGGCTGCAGCTTCGGTAGAGGATGCCAG
AGGTTGTACTCCGCCGACGCCGACACCCGCGGCGGCGGCGGGGGCGGCGG
TGTTGTCGTCGCCGGGTGGCGGGTACACTACTTTTTTCCCGGTAGACTTG
GCGGCGGACCGAGCCGCGGGCCTGTCCATCTCGCGCTGCTCGGCAGAGCG
TTCCCTGGACTGGTCCGCGAACAGCAAGAAGGCCTTCGCCACCGACAGTA
GCAGCCCTAGAGAGCTAGGAGGAGGGGGAGGGAGAGGGGCGTTCAGGAGC
CCTTCCAGCCTCGCGCCCATCATCGTGAAACCCTTGCCATTGGTGACGGC
GGCGGCCGAAGCGGCGGGGGGGGCGGCGTTGACTTCGCTGGCCTCCTCGG
ATTCGCTGGGTAGGCGGGGGGGGTTCGGCTCCGGAGCGGCTTCCTGTGTC
GGCGGTGGTCTAGGCAGCGCCAGTGGCTTTTCTTCCGGCTTCACGCCGGG
CGCCGCTCACGCCGCCTCCAGCAGCGGCGACAAGAGCGGCTTCCTCTCTT
GCTCGACGACAGGCAGTGCCGGCGGTAGTACTGCTGTTGTCGGTGCTGTC
GGCGTTGCTGCCGGGGGGAGGGTGGCCCACGCGTTCGTCGCCAGGTCGCC
ACCGGGTGGCCGTTTCTTGGCTGCTGCTTCTTCCACCGGGAGCAGCGGCG
GCGGTGGTAGCAGTAGTCGCAATGGGAAGCAACACTGAGGGATAGCGAAA
GCGTTAGCAGGAGGAGGAGGAGAAGGAGGAGGAGGCGGGGGCGGCGTGGG
AGATGGTCGCCAATGTCGCGGCAGCTACTTCGGCTGTTGCGTCGCCGTCG
GCGGGCCAGGTTGGGGTGACAATCACCGCGGTCACAACCATGGTAGCCGC
GCCCGCCGCCCGCCCCAGCCCCTGCCCCTGCCCCTGCCTCTGCTGCAGTT
CATACGACGCCGATGATGCTGTTTTTTTTTCATCGCCTCCTCCATTTCAA
AAAGCCAAAAAGTTACGAGAGTGCGCGTGCGTTCGCGGGAGAGAGAGCGA
GGGGCAAGGAGGAAGGGGCGGCAAGAAAGACAGGGAGCTCCTGAGTAGCT
TGCTTCGACCTATGTGGGTTTTTCGTACTTTTGTGCCGTCTACCCCTCTT
TCGGTGGGTTCCTGCTTTCTCCGGGTCCGCTGATTTACGCCAGCGAAGCG
GAGGAAGAGGCAGGCGGAGGGAAAGAGGAGCGAATGAATCGTCTGTTGAC
TTGTGCTTTGGATGTTTGCTTTTTTAGTTGTCTCAATCCGTACATACATG
TGTACATTTACTCGAGCCCTCTGTTCCCAACATCAGCGTCCGTCCCAGAG
TCGACGTTGCTTCCTCTGTTGATTTTTTAACGGAATTATGTGTACCGTAT
ACTGTAGTTTGCAAGTGTAGCGCGGGGTGAGGGGGAGGGCTTGGTGAAGG
TGGAACACATACGTTACCGGTGCACACAGCAGTACTAGTGCTGGGCGGGT
TTGCCCCCCTCCCCTCGTAACACCACCTCTCCTTCTTGCCGCCCATGCAT
GCTTGGGCAAGGCTGTTACTTTTCAGTGTTCTTAGTAAAAAAATGCCGCC
TGTGTATCGCACGCTTACGAGGAGTTTTGCGTGTGTCTCTTTTGTTTTAG
TGCTTCTTGTGCGCGGGGAAGTGGGGTCGGAGGTAAAGGCATCACATGTT
ATACTGTACGAGGTAATAATCAATGTCAATGTATATTTCAGGCCCCCCCC
GCCTCCCCGTGATACTTTGGGGTCGACCGACAATCAATGCAGAGGTTGAT
GAGTCGATGTGGGAAATACATGAACGGGGCAACCGACGGTATCGATGTAC
ACAATCACGTCAGAATGAATGTATATGCAGCATGGGGATCGTTTTTTGTG
CTCGCACAACACGAATCTTCCGCTGCGTGCTCACACTGGTTCAATGTTCG
GGGGGGGGGGGCGTCCGTCTTCCCGTGTCCATGTGATGGCTCTCTTTACA
TGCACATCATATCATACTGCTCTTGCATCAAAGATAGAGCGGCACGTAGC
AAATAGATAGTACTCGGAGTATATTTCGACACAGGGTATGTTGTACGTTT
GGTATTGAATGTATGTACAGTGCGTACGCGTGTGAGTGGGGTGGGGTGAG
TGTCCCTTTGAGACTGTTCCTCAGAGACGGGTCACCCTCTGGCTCGGATT
GAAACGAGGAGATTTCATTGAATCGTGAAACGACTCGTTCGATACGAAGT
GAGGTTGATTGATTGATGCGAGTTTTTCTCGGTCGGTTGAATGGTAGATT
CGGTTGAATGGTAGATTCAGTTACACCTTTTTAGTCTCTAAGTAAGTGGC
AAGTGGCGGCTATTCGAGGTGCGGTGCGGGTCCGTTTCAGTGTGCGAGAT
GATTTCGTGACTGCCGTACAGTAGTACATTTCACAGGATTTTTTTTTTCA
GGGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:340614..344819-

>mRNA_P-littoralis_Contig91.102.1 ID=mRNA_P-littoralis_Contig91.102.1|Name=mRNA_P-littoralis_Contig91.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1071bp|location=Sequence derived from alignment at P-littoralis_Contig91:340614..344819- (Pylaiella littoralis U1_48)
ATGCGCACAAAGAGCGCGGGCCTGCTGGGAGCGTCGACCAAGCTTCCGCC
ACTGGAGCGAGACGCTTCCGGTGGCAGGGGCGGACCGGGCGGCGGGGGCG
GCGGGCGTTCAGGTGCGGGCGAAGGCGGGGCAGCAGCAAGAGCAGGAGAA
GGGGGGCCACTCGGGAGCTTCGCGAGGGGCTGCGGGGGGCTTCGCAACAT
AACCTCCGCCCCGACAACGGTGGGATCTTTTTACCCTCCTTCTACTTCTG
TTGTTAATGTTGCTGTCGCGCCTCCCGCCGCCCCTTCGGCTGCTGCTTCG
CCTGCTTCGGCGGCGGCGGTGGCATCGGCGGCGGCGGCATGCGCATCATC
ATCGCCGGCTGCAGCTTCGGTAGAGGATGCCAGAGGTTGTACTCCGCCGA
CGCCGACACCCGCGGCGGCGGCGGGGGCGGCGGTGTTGTCGTCGCCGGGT
GGCGGGTACACTACTTTTTTCCCGGTAGACTTGGCGGCGGACCGAGCCGC
GGGCCTGTCCATCTCGCGCTGCTCGGCAGAGCGTTCCCTGGACTGGTCCG
CGAACAGCAAGAAGGCCTTCGCCACCGACAGTAGCAGCCCTAGAGAGCTA
GGAGGAGGGGGAGGGAGAGGGGCGTTCAGGAGCCCTTCCAGCCTCGCGCC
CATCATCGTGAAACCCTTGCCATTGGTGACGGCGGCGGCCGAAGCGGCGG
GGGGGGCGGCGTTGACTTCGCTGGCCTCCTCGGATTCGCTGGGTAGGCGG
GGGGGGTTCGGCTCCGGAGCGGCTTCCTGTGTCGGCGGTGGTCTAGGCAG
CGCCAGTGGCTTTTCTTCCGGCTTCACGCCGGGCGCCGCTCACGCCGCCT
CCAGCAGCGGCGACAAGAGCGGCTTCCTCTCTTGCTCGACGACAGGCAGT
GCCGGCGGTAGTACTGCTGTTGTCGGTGCTGTCGGCGTTGCTGCCGGGGG
GAGGGTGGCCCACGCGTTCGTCGCCAGGTCGCCACCGGGTGGCCGTTTCT
TGGCTGCTGCTTCTTCCACCGGGAGCAGCGGCGGCGGTGGTAGCAGTAGT
CGCAATGGGAAGCAACACTGA
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