mRNA_P-littoralis_Contig121.57.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A6H5K0Z4_9PHAE (Phosducin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z4_9PHAE) HSP 1 Score: 493 bits (1269), Expect = 7.090e-169 Identity = 267/289 (92.39%), Postives = 276/289 (95.50%), Query Frame = 3
Query: 42 MADLEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPG--SAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLLQEHDVFEA 902
M DLEDKILKKNIPGKYTWW+KDSDEEGE ARADWVDREASDPE EMT++EKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRM EGHTVPG +A XXXXXXXXXXXXXXXXX EGFLGSYRRRRLEQLKATAGRPQFGQI EAER+TFVSAVDTEDPRTSVVVHLYEPYIDACRR+NRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGC+TRVTDDIG+NFTQ+DVEWLLQEHDVFEA
Sbjct: 1 MGDLEDKILKKNIPGKYTWWEKDSDEEGETARADWVDREASDPEREMTEMEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMAEGHTVPGPLAATTIXXXXXXXXXXXXXXXXXXXXEGFLGSYRRRRLEQLKATAGRPQFGQIVEAERSTFVSAVDTEDPRTSVVVHLYEPYIDACRRMNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCMTRVTDDIGENFTQDDVEWLLQEHDVFEA 289
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A835YKQ5_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ5_9STRA) HSP 1 Score: 332 bits (850), Expect = 8.160e-106 Identity = 171/291 (58.76%), Postives = 211/291 (72.51%), Query Frame = 3
Query: 42 MADLEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGD---YDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLLQEHDVFEAI 905
M+ LED+ILK+NIPGKY+WW+KD+DE G ARA+W D +ASDPE E+T+LEKQKKWV+ DCP+P+RRTIMAR EKERARTGVKGVLAD A++ S A+ + ++YRAA L+RM GH V SA ++ FL YR++RL +L+A+A RP FGQI EA R FV VD DPR VVVHLYEPYI AC+ +NR LEVLA + P+VKFLR+ S GGD YDPVALPTL++YRA E+V C TRVTDD+GD FT+ DVEWLLQE ++FEA+
Sbjct: 1 MSTLEDQILKQNIPGKYSWWEKDTDEAGPKARAEWFDPDASDPEQELTELEKQKKWVEADCPDPVRRTIMARAEKERARTGVKGVLADHAAYQASEMADHQLQQQYRAAALQRMAGGHVVANSAPHFVPKTDPDAEDGDDDEDGDLND-FLSEYRKQRLLELQASAHRPIFGQIQEASRGDFVEQVDNVDPRCYVVVHLYEPYIKACQAMNRHLEVLAREYPSVKFLRMLSGDVSGGDEEGYDPVALPTLMVYRAKEIVACFTRVTDDLGDTFTKSDVEWLLQEINIFEAV 290
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7R9UGG9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGG9_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.740e-62 Identity = 126/297 (42.42%), Postives = 168/297 (56.57%), Query Frame = 3
Query: 51 LEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETE-MTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEG--HTVPGSAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAE---GGDYDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLLQEHDVFEAIQEPGAA 923
LEDK+LKKNIPGKY+WWD + D G E DP+ E DL+ Q+ D PEP+RR M+++ +E+ TGVKGVL DF+ W+ DA++ R A L+R G G A +D+ FL YRR+R+ QL A A P FG++AE FV VD DPR VVVHLYEP++ C ++NR LE+LA +QP+VKFLR+R+ G ++D +ALPTLL+YR G+ V + RV D++G+ DVEWLL VF+A Q AA
Sbjct: 3 LEDKMLKKNIPGKYSWWDDEDDHRGXXXXG-----EVQDPDEEGKDDLDVQRAL--QDAPEPVRRACMSQRVREKDNTGVKGVLRDFEEWRDEEDAKETSDAMRRNAALQRAARGAIRAADGGAHANVENADID-----------SDDEFLERYRRQRMSQLMAAAAAPTFGEVAEVSGDDFVETVDAVDPRAFVVVHLYEPFVHLCTKMNRVLEILARRQPSVKFLRMRADECRRTTGQEFDAIALPTLLVYRGGQTVATIVRVQDEVGEGLQANDVEWLLGLEGVFQASQNDSAA 281
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7S2B798_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B798_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.250e-46 Identity = 110/307 (35.83%), Postives = 160/307 (52.12%), Query Frame = 3
Query: 51 LEDKILKKNIPGKYTWWDKDSDEE--GEGARADWVD---------------REASDPETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGAD----EGFLGSYRRRRLEQLKATAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLLQEHDVFEAIQ 908
LEDK+L+ NIPG+YT WDKD DEE G+ RA+W+D E+ E ++ DL+++ + PE + +T A Q A+TG KGVL D+ K + K +R A+L RM G T + AD E FL +R R+ +L++ + +P FG I E + A+D DPR VVVH+YE Y+ C R+NR E LA VKF+RL+S+ + +DPV LPT+ +Y+AG++ RV D +G NF+ +D+EW+L + VFE+ Q
Sbjct: 14 LEDKMLRTNIPGRYTQWDKDDDEEEGGKNYRAEWIDPGEGADEAGAAGQPMNESQRMERDVADLQRK---IAAGMPETVAKTSYAHQMG--AKTGPKGVLNDYKEHKRIEAHNKQVDKLHREAVLNRMAYGATASNTLSLAQERIDAQVAQQEREAEEEADAAEEEDFLSKFREARIRELQSASTQPVFGNIVEVAAHEYCEAIDKCDPRVFVVVHIYEDYVKECGRMNRCFEELARSYTNVKFVRLKSTESPS-PFDPVTLPTICVYKAGDLCNSFVRVQDTVGTNFSSDDIEWMLNQEGVFESKQ 314
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7S2RCN5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RCN5_9STRA) HSP 1 Score: 162 bits (410), Expect = 6.270e-41 Identity = 126/293 (43.00%), Postives = 170/293 (58.02%), Query Frame = 3
Query: 51 LEDKILKKNIPGKYTWWDKDSDEEGEGARA------DWVDREASDP----ETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQFGQIAEAERAT-FVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLLQEHDVF 896
LEDKILK+NIPG+Y+ WD +DE G RA D V+RE D EM D+ K +++ ++ PE + + AR R TG KGVL D+ ++ E L A R A+L+R+ G S XXXXXXXXXXXXXXXX A++ L R +R +L+A A P FG++ E F+ A+D ED R VVVH+Y+ + ACR +NR E LA VKFLRL+++AA +D +P L +YR+G++ C RVTD +G+ FT +DVE LL EH VF
Sbjct: 29 LEDKILKRNIPGRYSTWD--ADEAGTERRAAAREEEDTVEREEEDAGDGATQEMRDVGKMQEYAEHGVPETLSKNEYARAHGHR--TGPKGVLTDYREHQVHEHVERLAADAEREAVLRRIAYG----ASREDAEXXXXXXXXXXXXXXXXXAEQDILRRLREQRRRELQAAASMPVFGEVREVTADDHFLEAIDKEDSRVFVVVHIYDEAVPACRSMNRCFERLARSHSHVKFLRLQAAAAPT-TFDADVMPVLSIYRSGDMHACCVRVTDQVGERFTTDDVENLLSEHGVF 312
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7S3GW90_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GW90_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.070e-36 Identity = 105/295 (35.59%), Postives = 155/295 (52.54%), Query Frame = 3
Query: 42 MADLEDKILKKNIPGKYTWWD---KDSDEEGEGARADWVDREASDP-ETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGAD--EGFLGSYRRRRLEQLKA----------TAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLL 878
M DLE+ I ++N+PGKY+ WD ++ + + D V E P +++M L+ ++ + + PE IR++I+A + + A TGVKGVLAD+ A + A+AE +R +L RMT+G V A XX + F+ +R +RL++L+ T FG + E FV V+ E VVVHLYEP + C RLN L+ +AA QPT+KFLR+++S+ E D VALP L +YR GE + L + D G FT+ D+EWLL
Sbjct: 1 MGDLEETIFQRNVPGKYSKWDDVDRNEFHDEPTEKYDQVPAETERPKDSDMELLQYAQQLSNAEVPETIRQSILAERARMTA-TGVKGVLADYRAAQAMAEAEAQAIALHRQQVLTRMTQGAKVQYVAEEEEDETAGLDINDIDSDXXXXXXXDAFMREFRAKRLQELRGASSSSAGANYTEQTSMFGSVKEVRAEDFVQEVEGEKRNVVVVVHLYEPSVQTCIRLNVLLDEIAASQPTIKFLRMQASSNEIV-VDRVALPILTVYRGGETIETLAGIAADFGQYFTKADIEWLL 293
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: F0XWS7_AURAN (Phosducin domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWS7_AURAN) HSP 1 Score: 124 bits (311), Expect = 2.650e-27 Identity = 106/299 (35.45%), Postives = 139/299 (46.49%), Query Frame = 3
Query: 51 LEDKILKKNIPGKYTWWDKDSDEEGEGARADWV---DREASDPETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGADEG---------------FLGSYRRRRLEQLKATAGRPQFGQI-AEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGD----YDPVALPTLLLYRAGEVVGCLTRVTDDIGDNFTQEDVEWLL 878
LEDK L+KNIPG+Y WDKDSDEEG G RAD + + E S+ + + DL D PEP+R R G KG+LA +K AE + E R L + G A XXX A FL YR+ R+ L++ G P FG + ++ A+D D RT VVVHLYEP CRR+N+ L+VLA ++ + F+ +R S E GD +D P L++YRAG VV +V DIG F D+E LL
Sbjct: 32 LEDKFLRKNIPGRYEHWDKDSDEEG-GGRADSLGGSEDEESEDDDPIPDLP-----GPMDDPEPLR---YGEAPDARKMPGNKGILAQHRYFKKMQYAERVELAEERERKLLDVARGRLRDPDAPPXXXVQLTERQREAMAELREAXXXXXXXXXXXXXXXXXEFLEEYRKMRIAALRSVQGMPTFGAFKVNCSKEEYLQALDV-DARTLVVVHLYEPTFPKCRRVNQCLDVLAGRRREISFVGMRLS--EAGDACAGWDSEVFPVLVVYRAGSVVETFFQVGKDIGATFDYADIESLL 318
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A6U3QXS5_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QXS5_9STRA) HSP 1 Score: 120 bits (301), Expect = 6.280e-26 Identity = 105/275 (38.18%), Postives = 150/275 (54.55%), Query Frame = 3
Query: 42 MADLEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETEMTDLEKQKKWVDNDCPEPIRRTIMA-----RQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEGHTVP------GSAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQF-GQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVGCLTRVT 830
M+ LED+ILK+NIPGKY+WWD +D+E + ++E+ K+W P+P++ + + + TG KGVL D+ + + R +L+R TEG T+ +AXXXXXXXXXXXXXXXXXXXX FL +YR+ RL QL+ T P + G++ E + S VDT DPR +VHLYEP I C +LN LE A+ + KF++LR+ A+ + D + LPT+++YR G + L R T
Sbjct: 1 MSGLEDRILKQNIPGKYSWWD--NDDEARPNXXXXXXXXXXXENNSLNEVEQVKQWDAQGVPKPLQISALEGGPVPHNGGKSQNTGAKGVLNDYRQTRAIESHNRQVEALERQDLLRRATEGATLQQGDVAMSAAXXXXXXXXXXXXXXXXXXXXXXXXEFLKNYRKNRLRQLQLTTHWPSYDGKVEEVTPEEYSSLVDTIDPRVHFIVHLYEPSIRDCVKLNSMLERCASLKKYAKFVKLRALDAKP-NMDCIVLPTIMIYRGGNLEHNLVRFT 272
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7S3PR85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR85_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.150e-24 Identity = 91/292 (31.16%), Postives = 146/292 (50.00%), Query Frame = 3
Query: 63 ILKKNIPGKYTWWD----KDSDEEGEGARADWVDREASDPETEMTDLEKQKKWVDNDCPEPIRR-TIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLK------RMTEGHTVPGSAXXXXXXXXXXXXXXXXXXXXGAD------EGFLGSYRRRRLEQLKATAGRPQFGQIAEAERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGGDYDPVALPTLLLYRAGEVVG--CLTRVTDDIG-DNFTQEDVEWLL 878
I+ + KY D +DSDE+G G + +V D + + E+ K V D P P R + + ++++ TG KGV AD++ +A+ +I ++ +LK R G++ G++ + E + R+ RL+Q+K A PQ+G++ + + FV VD DPRT VVVHL+E YI+ACRR+N L+ LA+K P +KF++L+++ A+ ALP ++Y G++V + V +IG D FT DVEWLL
Sbjct: 3 IISNELERKYLTQDLLQERDSDEDG-GEKTRYV----IDSDFSWSSEEENAKPVKEDAPHPDRDWSKLLTKQRKYGNTGPKGVKADYE------EAQRIIRRQNETKVLKDREEFRRQALGNSSSGTSLSYASQKKGISGSLVKSYDADDEIEIDDGEAIILKMRKMRLQQMKELAALPQWGRVLQVSKFQFVDEVDKADPRTPVVVHLFEDYINACRRMNDILDRLASKHPFIKFIKLKATDADQ-TLSHSALPAFMVYVNGQLVNEAGVNVVNTEIGNDLFTDTDVEWLL 282
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Match: A0A7S3NFR8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFR8_9STRA) HSP 1 Score: 113 bits (282), Expect = 3.830e-24 Identity = 83/283 (29.33%), Postives = 138/283 (48.76%), Query Frame = 3
Query: 51 LEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETEMTDLEKQKKWVDNDCPEPIRRTIMARQEKERARTGVKGVLADFDAWKLSADAEDLIAKEYRAAMLKRMTEG--HTVPGSAXXXXXXXXXXXXXXXXXXXXGADEGFLGSYRRRRLEQLKATAGRPQFGQIAEA-ERATFVSAVDTEDPRTSVVVHLYEPYIDACRRLNRFLEVLAAKQPTVKFLRLRSSAAEGG--DYDPVALPTLLLYRAGEVVGCLTRVTDDI--GDNFTQEDVEWLL 878
LED +L +N+PG+ T W++D DE+ R D E++ + ++ K + P + + R R G+KG L + +K L A+ R A R+ G T P + D+ F+ ++R RR+++LK A RP+FG + + +A +++A+D ED R +VHL++ + + R L L LA+++ + FL + AE ++D LP L+LYR+GEVV L RVTD + G++ T D+E L+
Sbjct: 6 LEDMLLTQNVPGRMTTWERDPDEK--------CPRNNDDSESDTDENFEEAKNPNVSSPAQLPEAMRYGDAPGRQRAGIKGQLKQYRYFKRMEYLSKLAARAERDANCLRIANGAVRTEPFVSDPNIRQISNSDDDDDEFE----DDEFMTAFRARRIDELKRNASRPRFGSMRQCVSKAQYIAAIDNEDSRVITIVHLFDTSLPSSRHLEALLVQLASRRSDICFLSMTIEEAECSQHEFDNSVLPILVLYRSGEVVDTLFRVTDSLLQGNSNTDADLENLI 276 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig121.57.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig121.57.3 >prot_P-littoralis_Contig121.57.3 ID=prot_P-littoralis_Contig121.57.3|Name=mRNA_P-littoralis_Contig121.57.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=338bp MADLEDKILKKNIPGKYTWWDKDSDEEGEGARADWVDREASDPETEMTDLback to top mRNA from alignment at P-littoralis_Contig121:240130..246118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig121.57.3 ID=mRNA_P-littoralis_Contig121.57.3|Name=mRNA_P-littoralis_Contig121.57.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5989bp|location=Sequence derived from alignment at P-littoralis_Contig121:240130..246118- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig121:240130..246118- >mRNA_P-littoralis_Contig121.57.3 ID=mRNA_P-littoralis_Contig121.57.3|Name=mRNA_P-littoralis_Contig121.57.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1014bp|location=Sequence derived from alignment at P-littoralis_Contig121:240130..246118- (Pylaiella littoralis U1_48)back to top |