mRNA_P-littoralis_Contig91.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.1.1
Unique NamemRNA_P-littoralis_Contig91.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig91.1.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.310e-17
Identity = 72/246 (29.27%), Postives = 114/246 (46.34%), Query Frame = 1 
Query:   85 FRATFNSLLHQAPSCKQIRQLDGQRKLDLLHEIRVLVSELLRLAQLDPDLHEERTFVANLQAGLEHCMMAGRADAVAIYVHNRLMSSSEESRQVDMGQITLEVADIKKFLGSSQPDVRAAITWRCAAMPPMMLAPQFHAAGGPQQQ--------------------------QQWSAPPAXXXXXXXXXXXXQRIRSSRPRRSPVCGNCKRAKRP--DVNHSHDRCPFVICRKSQASGHIERHCRN 738
            F+AT+++LL          + D   +   + EI+ +++EL R+  LD  L EE+ FV N   GLE  + + + D+ A++VH++LMS++EE ++ D  QI  E++ I KFL   +         R A MPP+  +P F   GG                               Q+  P  XXXX         +  + RP    +C  C+RA +   D+ HS+  CP V C K +  GH+ ++C N
Sbjct:  108 FKATWSTLLTLISGITAFGRHDKHNR---IQEIQRVLAELERVLALDTSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVKELSSISKFLTGPK---------RAAPMPPIAFSPHFGGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQYGPPGQXXXXRGFGKRGRNQGGAKRP---AMCNTCRRAGKSGADIAHSYKVCPMVQCHKCRGYGHVLQNCPN 338
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BLAST of mRNA_P-littoralis_Contig91.1.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.690e-14
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  154 QRKLDLLHEIRVLVSELLRLAQLDPDLHEERTFVANLQAGLEHCMMAGRADAVAIYVHNRLMSSSEESRQVDMGQITLEVADIKKFL 414
            Q+K  +LH++  +++ELLRL  LD  L  ER FVA L  G++H +   + DA  +++H +LMSSSEE +QVD   +  E++ + KF+
Sbjct:    4 QQKAAILHDVSSMLAELLRLPMLDGSLSTERKFVATLDEGVKHALQGKQYDAAGMWLHGKLMSSSEEGQQVDRALLIKELSGVAKFI 90
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BLAST of mRNA_P-littoralis_Contig91.1.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.430e-9
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  178 EIRVLVSELLRLAQLDPDLHEERTFVANLQAGLEHCMMAGRADAVAIYVHNRLMSSSEESRQVDMGQITLEVADIKKFL 414
            EI+ +++EL RL  LD  L EE+ FV NL  GLE  + + + D+ A++VH++LMS++EE ++ D  Q   E++ I KFL
Sbjct:   83 EIQRVLAELERLLALDTSLVEEKVFVHNLVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVKELSSISKFL 161
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BLAST of mRNA_P-littoralis_Contig91.1.1 vs. uniprot
Match: D7FPB8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.610e-5
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:  133 QIRQLDGQRKLDLLHEIRVLVSELLRLAQLDPDLHEERTFVANLQAGLEHCMMAGRADAVAIYVHNRLMSSSEESRQVDMGQITLEVADIKKFL 414
            +I ++   ++  +L E+R L+ EL RL  LDP L   +  V ++   L+HC    + D  A+++H  L+S SEE  Q D  QI  ++  + K +
Sbjct:  347 EILKMPENQQYAVLAEMRPLIGELSRLTALDPALAAGQKVVLDMATALDHCEHIIQPDTGAMWLHEELLSPSEEGEQTDREQIVKQLTTLFKLV 440
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K7C0_9PHAE1.310e-1729.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1T2_9PHAE2.690e-1441.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE1.430e-943.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPB8_ECTSI2.610e-531.91CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:4309..7071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPB8
PFAMsCAP_GLY,CRAL_TRIO
Model size741
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.28e-06
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size741
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791814.8825488-CDS-P-littoralis_Contig91:4308..49651680791814.8825488-CDS-P-littoralis_Contig91:4308..4965Pylaiella littoralis U1_48CDSP-littoralis_Contig91 4309..4965 -
1680791814.893332-CDS-P-littoralis_Contig91:6987..70711680791814.893332-CDS-P-littoralis_Contig91:6987..7071Pylaiella littoralis U1_48CDSP-littoralis_Contig91 6988..7071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.1.1prot_P-littoralis_Contig91.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 4309..7071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.1.1

>prot_P-littoralis_Contig91.1.1 ID=prot_P-littoralis_Contig91.1.1|Name=mRNA_P-littoralis_Contig91.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=247bp
GDSETGSQAGDSAQSSRKPLTFVSVPDKFRATFNSLLHQAPSCKQIRQLD
GQRKLDLLHEIRVLVSELLRLAQLDPDLHEERTFVANLQAGLEHCMMAGR
ADAVAIYVHNRLMSSSEESRQVDMGQITLEVADIKKFLGSSQPDVRAAIT
WRCAAMPPMMLAPQFHAAGGPQQQQQWSAPPAFHPGMGPPQQQQQRIRSS
RPRRSPVCGNCKRAKRPDVNHSHDRCPFVICRKSQASGHIERHCRN*
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mRNA from alignment at P-littoralis_Contig91:4309..7071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.1.1 ID=mRNA_P-littoralis_Contig91.1.1|Name=mRNA_P-littoralis_Contig91.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2763bp|location=Sequence derived from alignment at P-littoralis_Contig91:4309..7071- (Pylaiella littoralis U1_48)
GGGGATTCGGAGACCGGCAGCCAAGCTGGCGATTCCGCTCAATCGAGCCG
GAAACCACTGACATTTGTGTCAGTCCCGGACAAGGTGAGTTGCGTGCTGG
TTTGGTTTTTATGCGAGGCCACCCACTGCTGCACGCTGTTCCCACAGCAC
GAGCTTGTGCTCATGTGACATTGCACTGCTTCTCCCGCTTGCGTTCCGAA
GCGAAGGTTGTTTGATTTCGTTTCCGTGTGTTCCTGAGATGTTTCTATGG
ATACCCCACAGCCCGGAGGCCAATGCAGAGCCGTTGCCACATCATGTGTG
CTCCTTGGGTGTGTCCGGCGGTCAGTTTCGCGCATCTCAGTTGACTTCAT
CTTGGGTGTCTGTTCTTTTGTGGTTGTTTGCCTCGCTGGGTTTTTCCCTT
GTTCTATATGGTTGTTTCATTTGATAATTAGGTCGCGTTTGTATTAGCAG
TGGCACTGCCGCAGCAGTGCCATGTGCCATGATGGTTTGTGATCACTCGT
CAAAACCGGCACAATCTACTGTTGCCACAGCACCGCGGGCTGTTACTCTA
TGATGCGGCACACGTGTTTCTTTGATGCAACGGCCTTGTTTACTGCTGTT
GTTCACGGCATGTACCTGTTTCTGCATCCATTTGTACCAACAGAACTACT
TTACCACAGCGCCGTGTGATACAGCAGTAGGATGTGTCCCATGTGTTTAT
CGGAGGAAACGACATTTCCTGCTGTTTGTCACTACCTACACCACAGCCGC
GTTCTCGCTGTTCGCTTGAACTCTTTACGTTATCCACCGGTGTCACCCCT
ACACATATACTACGCGTTTGTTTCTCTGTGAGTCTGCCCGTGTCATACGT
CTGTTATTTTCATGTGTCACACCGCGGCGAGTGCCGGGGCAGCCCGTGTT
GCCTCTTCGGTTTCGTACTGAGAGTGCTGCGTTTCCCAGTTCCATTTCCG
GGCTGTTTTTCGTTTTTTTCGCGTTCGGCTTTTCGGCCGCCTCTATTTCA
CAGACTCGCTCTTGTTCGTGTGTACCGTTGTCTCTCTGCGTCTGCGGCTT
TTTATCTGGAGGGTTTTTATGCCGCTCGAAATCACGGCGCCCGATCGCGG
CGTGTCCAGGGCCGTGCTTGTTCGCTGTCGTTCCGACGTTGACCGTTGTT
CTAGCCCCTGATTGAAGCCGGCGGCACTTGTTTTCCTGGCTCGGTAGCTG
CCATATTCGCTCCATGTTCATGCGAGAGCAGCACCACTCACTACGCACTC
GAAGGCGGACACAGCAGGTGTCTTCCTTTCTTTGTTCTTGTTTTATTCGC
GGTGGCGTTCCACCGGCATTTGCGGTTCTTGTGGTGGCTCTCCACGACTG
CGCTGTATGTTCACGCTCGGTCATGTCAACCCGTTTCCCGCCCATCCAGA
TGTTGGCGGAGGTTTAATAATTGAATACATGCGTGTGCTCTCGCTACCGA
TTGCACCGTTGCCCTACGGCACATGTGGATTGTGCTAGTGGTCCGATCTG
TCGTTGCAAAGGATTGCCCACGTTCCGGGGTATATATCTGGTTTGTTCCC
GTGTTGGGCTGTGATGGGGGGACGTTTTTCTCCACACCAGCCGGGTGGTT
TTGTCGTTGTGCTCCGACAAGCTCGGCCAGGCGCTGGCGAGCTCGTGTCT
GCCCGAGTTCCGGGGTATGGTGTTCGTGTACCACGCCGTCAGGGTTGGTT
CTGTCGTTGTGCTCCGACGCACCTTGGGCGGGCGTGGGCGCACCCAAACT
ATTAATCTTAGTTTATTTCTCGTAGCGTTCGGTACGTAGCGCCGGCTCAC
CAATAGTTCTCATGTGGTTCACAGACCCTTTTTCTTCGCGATGCTGAGGT
TTTGGACGCCGTGAGCACGTTCGTACTTATTTATATACCGATACGCGTGG
CGCTCCGCTGTCGATGATATTTTTCTCAGGCGCTCCGATATGCAGTTCTC
GTTCGTGTGCAGCCGCACGTTGTCCTCCGCGGTTTGGGGTTCCGTTTTTA
TTATCGTGCGCTCCGATATGCTCCGTGTCCACCGGCTCCGTGTGGTGTTA
ACCTTATTTGCGATCGCTCGGCCATTTGTACGCGATTATGATCTGCTCTG
TGCCAGTTCCGGGCCACGTTCAATTCTTTGCTGCACCAGGCGCCGTCGTG
CAAGCAGATCCGGCAGCTTGACGGTCAACGGAAGCTGGACCTGCTACATG
AGATTCGGGTCCTTGTGTCGGAACTGCTGAGGTTGGCTCAGCTGGACCCT
GACCTGCACGAGGAGCGCACGTTCGTCGCGAACCTGCAAGCTGGGCTGGA
ACACTGCATGATGGCTGGCCGCGCGGACGCGGTGGCTATCTACGTCCACA
ACCGCCTCATGAGTTCGTCCGAGGAGAGTCGGCAAGTCGACATGGGACAG
ATTACCCTGGAGGTGGCGGACATAAAGAAATTTTTGGGAAGTTCCCAGCC
GGATGTTAGGGCCGCCATCACGTGGAGGTGCGCGGCCATGCCGCCCATGA
TGCTGGCTCCTCAGTTTCACGCTGCCGGAGGACCGCAGCAGCAGCAGCAG
TGGTCTGCCCCCCCGGCGTTCCACCCAGGGATGGGTCCGCCTCAGCAACA
GCAGCAGCGTATAAGGAGCTCTCGTCCGCGACGCTCTCCGGTGTGTGGAA
ACTGCAAGCGGGCCAAGAGGCCTGACGTAAATCACTCGCACGACCGGTGT
CCTTTCGTCATCTGTCGCAAGTCCCAAGCGTCCGGGCACATCGAGCGCCA
TTGCCGAAACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:4309..7071-

>mRNA_P-littoralis_Contig91.1.1 ID=mRNA_P-littoralis_Contig91.1.1|Name=mRNA_P-littoralis_Contig91.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=741bp|location=Sequence derived from alignment at P-littoralis_Contig91:4309..7071- (Pylaiella littoralis U1_48)
GGGGATTCGGAGACCGGCAGCCAAGCTGGCGATTCCGCTCAATCGAGCCG
GAAACCACTGACATTTGTGTCAGTCCCGGACAAGTTCCGGGCCACGTTCA
ATTCTTTGCTGCACCAGGCGCCGTCGTGCAAGCAGATCCGGCAGCTTGAC
GGTCAACGGAAGCTGGACCTGCTACATGAGATTCGGGTCCTTGTGTCGGA
ACTGCTGAGGTTGGCTCAGCTGGACCCTGACCTGCACGAGGAGCGCACGT
TCGTCGCGAACCTGCAAGCTGGGCTGGAACACTGCATGATGGCTGGCCGC
GCGGACGCGGTGGCTATCTACGTCCACAACCGCCTCATGAGTTCGTCCGA
GGAGAGTCGGCAAGTCGACATGGGACAGATTACCCTGGAGGTGGCGGACA
TAAAGAAATTTTTGGGAAGTTCCCAGCCGGATGTTAGGGCCGCCATCACG
TGGAGGTGCGCGGCCATGCCGCCCATGATGCTGGCTCCTCAGTTTCACGC
TGCCGGAGGACCGCAGCAGCAGCAGCAGTGGTCTGCCCCCCCGGCGTTCC
ACCCAGGGATGGGTCCGCCTCAGCAACAGCAGCAGCGTATAAGGAGCTCT
CGTCCGCGACGCTCTCCGGTGTGTGGAAACTGCAAGCGGGCCAAGAGGCC
TGACGTAAATCACTCGCACGACCGGTGTCCTTTCGTCATCTGTCGCAAGT
CCCAAGCGTCCGGGCACATCGAGCGCCATTGCCGAAACTAG
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