mRNA_P-littoralis_Contig91.113.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.113.1
Unique NamemRNA_P-littoralis_Contig91.113.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:362709..364004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size247
Hectar predicted targeting categoryother localisation
Exons3
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791814.390661-CDS-P-littoralis_Contig91:362708..3627801680791814.390661-CDS-P-littoralis_Contig91:362708..362780Pylaiella littoralis U1_48CDSP-littoralis_Contig91 362709..362780 -
1680791814.4011993-CDS-P-littoralis_Contig91:363471..3635641680791814.4011993-CDS-P-littoralis_Contig91:363471..363564Pylaiella littoralis U1_48CDSP-littoralis_Contig91 363472..363564 -
1680791814.4120846-CDS-P-littoralis_Contig91:363923..3640041680791814.4120846-CDS-P-littoralis_Contig91:363923..364004Pylaiella littoralis U1_48CDSP-littoralis_Contig91 363924..364004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.113.1prot_P-littoralis_Contig91.113.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 362709..364004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.113.1

>prot_P-littoralis_Contig91.113.1 ID=prot_P-littoralis_Contig91.113.1|Name=mRNA_P-littoralis_Contig91.113.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MDGRGTSCACGFPVPRAVVTCMEPQHKVPLGHVLPTQAFLKKESSHLVYP
QAGMEAKKVSFQQRNLRMGLDPPRRRPRPLSV
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mRNA from alignment at P-littoralis_Contig91:362709..364004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.113.1 ID=mRNA_P-littoralis_Contig91.113.1|Name=mRNA_P-littoralis_Contig91.113.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-littoralis_Contig91:362709..364004- (Pylaiella littoralis U1_48)
ATGGATGGGCGAGGCACTTCTTGTGCATGCGGGTTCCCTGTCCCGAGGGC
TGTGGTGACGTGCATGGAGCCGCAGCACAAGGTGATTGTTGAGTTCGTCG
CAGGCGTTGCGTTGAAACTCTGTCTGAGTACATACGTACGCGTTTGTTCT
GAAAAATGAGAATGGTGCGTGTTGCCGTGAACGCATTTGGTGTCGGGTGT
CCTGGTCCATAACGGCAGTAGAACCAAAAGGTGTGTATGCAGTCGTTGAT
TCACGCAGAGAACAACATGTCGCGCGCGACGCTCGTATGTAGTCAGTCTC
GGGTAGGGATGCGTCTGCTGCTTGTTCCATGCACAGGGATAGAGGGAGAC
AAACACCGAGGAATTCCAAAAATGTCCGACTCTCCTTCGAACATTTTCAA
AATAGGATGCGTACGTACTTGTCTTCGCTTGATCTGACAGGTGCCTCTGG
GGCATGTACTCCCCACTCAGGCGTTCTTAAAGAAGGAGTCAAGTCACCTG
GTTTATCCGCAGGCGGGGATGGAGGCCAAGAAGGTATGGGCGGTGGCTTG
CGTGACGACACCATTAGAACACAGATTGGAGAAAGACTTTGTGTTGATGA
AAATTCCTGAAACTCAAACATGGTATGATACGGCTTGTAGAAGATTTTTC
CTCGAACGAAGAGGGCTGCACAATACAGAACGCCGCCTGCCGTACCTCCT
CCTTCATCGTTTGTTATACAACTATATACTGCTGTAGCAATAGAAGTACT
AATAATGATAGCGTGGGCGGCCAGTAATAATGATAGGGTGGTTCGCCCGA
AGCACAGGACCAGTCGCTCCATGAAATGTGATGCAGACGCGCATCGCCTG
AAGCATGTGTGTGATATATACTATCCAAAGCATCCCACCAGCAGTATTTC
GTGACGATGAAATCACCACAGCTGTACTGAAGTGGCCGGGCCATTCGTCG
TTCACCCCAAATGTATCGATCCCCCAGCGCGCCTAGACTCGCGCGAGAAT
GCTTTGCGTTTTGTTGTGAAGAAATCGGGCGGCATGTGCCGTTGTGTTGT
CGGCAAGGATACAGCGTTGCATGTTGAGCAAATGTGTGAAACATTGACGA
CAACAGAGAAAAAGCGGTCTTTCCTTTCCGCATGGAACAAAATTTCGCCG
ACGCCGGTTCGGATGACTCCGACGAAAGCATCATGACGTCCTTTTCGTGC
TTTGTCTTCTACACCTTCCGCAAGGTCTCCTTCCAGCAGAGGAACCTGAG
GATGGGACTGGACCCACCCAGGAGGCGGCCCCGCCCGCTATCTGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:362709..364004-

>mRNA_P-littoralis_Contig91.113.1 ID=mRNA_P-littoralis_Contig91.113.1|Name=mRNA_P-littoralis_Contig91.113.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig91:362709..364004- (Pylaiella littoralis U1_48)
ATGGATGGGCGAGGCACTTCTTGTGCATGCGGGTTCCCTGTCCCGAGGGC
TGTGGTGACGTGCATGGAGCCGCAGCACAAGGTGCCTCTGGGGCATGTAC
TCCCCACTCAGGCGTTCTTAAAGAAGGAGTCAAGTCACCTGGTTTATCCG
CAGGCGGGGATGGAGGCCAAGAAGGTCTCCTTCCAGCAGAGGAACCTGAG
GATGGGACTGGACCCACCCAGGAGGCGGCCCCGCCCGCTATCTGTA
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