mRNA_P-littoralis_Contig91.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig91.6.1
Unique NamemRNA_P-littoralis_Contig91.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig91.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig91contigP-littoralis_Contig91:13512..17647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791814.2196352-CDS-P-littoralis_Contig91:13513..135931680791814.2196352-CDS-P-littoralis_Contig91:13513..13593Pylaiella littoralis U1_48CDSP-littoralis_Contig91 13514..13593 -
1680791814.230407-CDS-P-littoralis_Contig91:17565..176471680791814.230407-CDS-P-littoralis_Contig91:17565..17647Pylaiella littoralis U1_48CDSP-littoralis_Contig91 17566..17647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig91.6.1prot_P-littoralis_Contig91.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig91 13514..17647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig91.6.1

>prot_P-littoralis_Contig91.6.1 ID=prot_P-littoralis_Contig91.6.1|Name=mRNA_P-littoralis_Contig91.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
PSFFLHRVRELLDLGDQPVDMSYYGPQALFCCIPLLSVFPYVLSLPHPLP
MICS
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mRNA from alignment at P-littoralis_Contig91:13512..17647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig91.6.1 ID=mRNA_P-littoralis_Contig91.6.1|Name=mRNA_P-littoralis_Contig91.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4136bp|location=Sequence derived from alignment at P-littoralis_Contig91:13512..17647- (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGGTCAGATACCCTGCTTTT
GCATGCGTATACGGGGCATAATGAGACTCTGTCATGCGTGTCCAGCCTTT
AGCTGTGCATGGCGGCGGCATGTAACAGAGTACTCTATGAGTTGGTGTTT
GCGTTCCAGAACGAGGCAGAACAGAGACTCGCTGCCTCGCTCGACATATA
TACCCACTGGCTGCTCATAACATGGTGTCTAATCCGGGGAAAGTTTGCTC
ACGCAATGCGCGCGACTACACACCTAGCATGGTGTCCTGAGAGATAACGC
TCTCGCGATGTACACGCCTGTGCTCATGTGCTTGGTTGCCGCGTCTGCTC
AAATAGCTTTTTGTTCTTTTTTAGTTTTATCCGCATTTCTAGGGTCGCCC
GTGATACTAGTATTACTACGAAATAAATGCTGCTTTTTCCCGCCTTATTT
TTATTTTCACATCTATCTGGAGTCCGTCCTGTCTTTGTACAGCGGTATGA
CTTTCGACGTTTTTGCACTTCGCACTGCTGTATGTGAAGCACGCTGAGAG
CCCGAGCTCTGCGTATGTCTTGTCCGTCTTTGCACGGCTGTGAACTGCTG
TATACATGTGATAGCCTGCTGATTGATGATGCTCGTACGGTGGACAGAGT
TTTTTTTTACCATGATATCGTATCCTCCGGTTGAGTATATATATGTGAGC
TGTGGGTACAGCGCTTCAGGTATACCATGCATGCCCCGCAGCTGCACCGG
TTCGCGCTGTGGTTTCGGTGTATTCCGACATCCATTTTGTTTTCTTCACA
CTATAAAAGACTACACACTATACTAAATAGACCTTGTACTTGTATTTTTT
TTTTTCATGTTTTCTATCTTCCGACATGTATTTTTTTTCTCTTGATATTC
TACACGGAATACAACAGACTGGTTTATGATACGATTAACCAAAATACATC
CTTGAACATTTTTTTACATGCAGTGCCGCCGATCTGCCTGCTGTAATGTA
CGACTTTTTTTTTGTGTGCCCTCTGGGTCCCTTGTGGCCCTTCGTGCTTT
CTAAACGCTAATCTTTTCCTGCTGTACGACTTTTTCTTTTGTTTCTTTTT
TGCCCTGGGTCCCTTGGCCCCTCGTTTTATTTATTGTTCCTTTTTGACTT
TACTATTTTTATGAACACTTTTCGTTCGTCTTCTAGGACGATACATAGTT
TTTTTTTATTTTTGATTTCTCCTGCATGATCTGTTGCTTTATTTCACTGC
ATGATCTTTTGATCTATTTCCCTTTTACCCTTGATGCGTCCCAAAGTTTT
CGCCTACCTCACAGCAGTGCTGTTACTGAAGTACTTGTACTTGGAATATA
TATATATCTGGAATTAATTTTTCTTCGTCTTCCCTATTTCGTCCCGCCTT
GAAGGTTGAATTTTGTTTTGTTTTGTTTTTCCATTTTTTTTTTTTTCCAG
GATTGATAAAGTATGCTCGACCCAGGAAAGTCCCAGGTATATGAGAGCTG
CCTTCTTCCTGTCGTTGCCGTTTTCATTTTTATTATATTCCTTGAGAATC
TGTGTGTATTGAGTTATTTCAAAGTTAACAACCAAGACTACTACTGCTGT
ACTCGTATATTATTACTCAGAGCAACAGCAGTAAAATATCATTGCGATTT
TATATCGTACTTTGTCGTGCACGCACGTTAAACTTACCGTTCCTTCTTGT
TTTTTTTTTTTTTTCACTCTCTGAAACAACAGCAGATCGCGCACTGAATG
GCGCACACCTAAACTTTCACCCGATAATTATGCTTCATGATTTCCCTTCT
ATTTTGTTTTTCTCCTGTCCCAACAATTTTTTTTTCTTGTGAGTTGTTGC
TTTGCCTGCCTGGGTTTTCAGTTTACTCTTCCTTTTCTTCGATAATAATG
TTGATTGGAATGCTAGTGCACCGCTACGTCGCTATGAATGTTTTTTTTCT
TCCTTCTGCCTTGACGTGCGAGTCTTTTTTCTTGCATGCTCCTTGCCAGG
ACTCTGTATGCTCGACTAAACAGGTTACAGGTGGATGAGAGCTACTTTTT
CCTGTTGTTGTACTTGTTTTTTTTGTTTTGTTTCTTCCGTCTCAGGGTCT
CTCCGTTTGGTTTGCTTTCGGCGTGTCGTGTTTCCGTCTTTCTCTTTAAC
TTGGAGTGCACTGTATGTCGTATGATTTTTACCAGGGATGAATGCATGCT
CGATCCCAAGAGTTGAAGGTATATGAGAGCTGACTTCGCCCCTGTTGTTT
TTTTTTCTTTCTTCGTTTTGTTCTCCTCTATTTTTTTTTGTGTCTTCCCC
TTCCACTTGATTGAGGTCGCCGCGATAAAATGCCTAAACACCCGAATCTA
CACACAGCAGCAGCTATTATTCTTCTTTGTTTTGACAGCAGCTATGTCAT
ATATATTTTGTTGTTTATTTTTCGTTTCTATTTTGGTTTTGCTGCCTTTG
TCTTGCTTGGTTTATTCCTGAGTTGTGTGTTTTATCTGGGTTTGTTTCCT
CTCTTGGGTGCTTTGAAAATGTCTTGTATTTTTTTCTTTTCGTTGTTGGT
TTACTGCGGAATACATGTGTGTTCCGATAATGGTGATGATCTTATTCTTT
TTATTTTGTGATTTTGTTGTGCAAATATCAATAAACATCGTACGAAGTAT
ATTTTTCCGACTCGCTTGGTTTGATTTCTCTTTCTCTTGCGAAGTTTGGC
TTGCAGGTTGGTTTGTTCGACCCCAGGAAGTGTACACAGGTGACTGAGAG
CAGCCTTCCTTTGTTTATTTTTCTTTTATGCATTATATTATGAGTCTCGT
TTTTTTTGTTTTAATACATACAGTCGTTTTTGTTTCGTTTTTATTTTCCT
TATTCGCTTCTTGTTTTTTTTGTTCGTCTTCTTTTCCCGTCATTTATGTG
TGCATGCAGGTTGGTACGTTCGACCCGGAAAGTATTGAGGTGATTGAGAA
CTACCTTTCCTTTGTTTCAATACTCTTGTTTGAATCGACCTCGTCTTCTT
TGTTTTCGGCTTGTATTTTTTTGTTCACTTCGTCTCTGGTTTTATCATAT
TATCGCTGGCTACATAAATTTTCTTCTCTTTGTCATGTGCCAAACAGCCA
CTCACTTTCGTGTACTGCATCGCACATTGTTGACAACACGGAAAATGCGA
CGACAGACAAGTTGTTTTGCTACTTTTTTTTTCTTGTGGTCTAATCATTA
CGTGCCAAACAACCACTTTAGTGTACTGCATGGCACATTCTTGACAACAA
GGAATGCGACGATGGTATCATTTTTTTTAATATTATTCTTGATCGTTCAA
AGTTGTTTTCGTATGAATGACGCAGCAGTATTGCATATTACATTCCTCAT
GGCGTTCCATATGTGCCAAACAGCCACTTGCGTGTACTGCATGACACCTT
CTGGAACCCATGGAATGGCAGACCGATGTCTTGACTGTTTTTTTCTCTTC
TGTGCCTTCTCAATTACAGCGGCTTGCATACTTTGTTCCATGTTTTTTTT
CCGGGGCGGGTCATGCATGCCGCATGTTCTGACAAGTGCATCAGACGGCT
AGAACCTGCGTGCACATGCTCGCGTACTGCAGTTGCAGCAAACACAGAAA
AGGCGCACCATGCGCCCAGTACCGTCCATTGGTTTTGGGTGTATGTTTGC
CGTCGCTACTGCTGCTGCTGTGCTGCTCCCGCTGTTTCTTCGGCTGTTGC
TGCCGCTTCTGCTGTTGCCTCTTCTCTTCCGTCTGCCCTGTCTGTCTGCC
TGTTCGTCCGTCTTCCTGTCGTTGCTGTCGGCCCTGTCCCGTGTGTCTGC
TAGCCGTCTGGCAGTTCTGTTTTATCCGTTCGCCTGTCAATTACCAGGTG
GCTGGTAGTTGCTGGTCTGCAAGTTCACCGAGTGGCCTGTCTCTCCCGCC
ATGTCGTTGCCGCCATGTCGTTGCCGCTGCCTGTTCCGTCTTGTTGCCAC
ATCGCGTTACCTGCTCGCCCTTTTCGGTTGTTATGGCCCGCCGCTGCCTG
CTAGCTTTGTTTTGTTGCATTCCGCTGCTGTCGGTGTTCCCGTACGTCCT
CTCGCTGCCCCATCCCTTGCCGATGATATGCTCCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig91:13512..17647-

>mRNA_P-littoralis_Contig91.6.1 ID=mRNA_P-littoralis_Contig91.6.1|Name=mRNA_P-littoralis_Contig91.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig91:13512..17647- (Pylaiella littoralis U1_48)
CCGAGCTTCTTCCTCCATCGCGTACGTGAGCTCCTCGATCTCGGTGACCA
GCCAGTCGACATGTCTTACTACGGACCCCAAGCTTTGTTTTGTTGCATTC
CGCTGCTGTCGGTGTTCCCGTACGTCCTCTCGCTGCCCCATCCCTTGCCG
ATGATATGCTCC
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