mRNA_P-littoralis_Contig907.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig907.8.1
Unique NamemRNA_P-littoralis_Contig907.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 4.090e-76
Identity = 205/578 (35.47%), Postives = 275/578 (47.58%), Query Frame = 1
Query:  493 VDECDTRGAATKVEKEQGAHYRKASKIEDPKFREAYEKVWHLKNHD-QKPKKGQPPPPLGPHDPKGWVTDGLPVDETSPAFLRRNKHKGGRKFSLTSDLLERLPKVNRQGLQAVRDFVGGKG---PYLLSSSSRSAS------RERPRTSFYRRPTATPTSARRLPTRPRSRRCATRRRSGGRGSSGYLQPRTRTRRMWPTFSGITCTG*LASSSRAGSRRNGVSPTTGGITGPRLQPGTRM-HAS*LVPP---LLFSLLPHRAPDRQG*QEGPQLRLQASHQVQCCFLLRGF-HMMSRWSSARLDLCFHHEVQPEEAHQTWRRVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVLAERREGGHAAGSAA-----------GAAEQMGGGGDLTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEVPLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSICSNGLGKMRAVHLCKQCRASTQGHVAAALEAD-RHYTAINWA 2145
            +DE  T GA + + K +  HY + SKIED  FR A E VWHLK     KPK G+PPP   P DPKGW  +GLP DE+S    RR+K  GG  FSL+  L   L K ++QGL  +R FV  KG   P++    +          RE      +    + P    + P R R+++           +  + + RTRT RM      +  T   +S+S        +           + PG  + H   +V     ++F L+           +   ++L       CC     F   +    S  + L  +      ++ +T  + A  NGE ++S QP+ R +Y   MGGVDVADQRL  HA  H+PMT+FWRRVF QK  QA+SNA+LLF  WA VL   C   L    + G                   AA+      DLT+ EL E  + + + +K ERVDWD RLA  LM+ C VGH   G RRT K V +Y   GAKS  VC GG C      + R+K  RTRGVCWC  C++G GK RA+ LC +C      HV A   A  R Y  I+W+
Sbjct:    1 MDELQTPGARSSIAKSKELHYAQTSKIEDEGFRRAQESVWHLKRIKLPKPKAGEPPPSPIPDDPKGWGFEGLPRDESSDPCKRRHKIPGGDTFSLSDQLKPSLSKADKQGLAVLRSFVSEKGGGLPFMFFEKTFPMEAQDVVLREMNGYVNFCADESDPPLEHQEP-RHRAKKV----------TRDFRRCRTRTWRM-----DLESTP--SSASTCMPHNGELEDVLNKCWSELVDPGACLSHDEQMVKSTARVMFMLMRFN--------KSKPIKLGIKCWAICCPSGYCFVQSIDGGFSGDIKLKPYATCPVGKSARTVVKRAADNGEKVSSSQPLARKEYVKNMGGVDVADQRLGAHARTHRPMTFFWRRVFAQKFSQAVSNAWLLFYEWAGVLAKQCTVALDAATQDGEVGDXXXXXXXXXXXXXXAAADSC----DLTVAELREFQSLVKKAMKVERVDWDRRLANHLMSLCSVGHTETGARRTAKPVEMYSVKGAKSSLVCYGGHCEETAKASRRYKGSRTRGVCWCDTCTDGSGKDRALILCTKCNKVPAAHVTARKHAAARKYKPISWS 548          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.050e-59
Identity = 124/248 (50.00%), Postives = 149/248 (60.08%), Query Frame = 1
Query: 1414 RRVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVL-AERREGGHAAGSAAGAAEQMGGGGD---LTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEVPLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSICSNGLGKMRAVHLCKQCRASTQGHVAAALEAD-RHYTAINW 2142
            +R A  NGE ++S QP+ R +Y   MGGVDVADQRL  HAH H+PMT+FWRRVFDQK  QA+SN +LLF  WA VL+  C A L A  ++GG      AG AE+ G   D   LT+ EL E    L + +K ERVDWD RLA  LM+ C VGH   G RR  K    Y  NGA S +VC G  C     P + +   RTRG CWC IC+NGLGK RA+ LC +C    + HVAA   A  R Y  I+W
Sbjct:  247 KRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLFYEWAGVLVTQCTAALEAATQDGGM---GDAGEAEEGGVAADSCDLTVAELREFQTLLKKAMKMERVDWDRRLANHLMSLCNVGHTENGARRATKPSESYLVNGACSSRVCHGRGCKT--PPGSPYAGTRTRGACWCDICTNGLGKDRALILCTKCHKVPEAHVAAREWATGRKYKPISW 489          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5JWA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA2_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 6.910e-43
Identity = 102/254 (40.16%), Postives = 120/254 (47.24%), Query Frame = 1
Query: 1528 HAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVLAERR----------------------------------EGGHAA------------GSAAGAAEQMGGGGDLTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEVPLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSICSNGLGKMRAVHLCKQCRASTQGHVAAALEAD--RHYTAINWA 2145
            H H HKP T+FWRRVFDQ L QAISNAYLL+  WA +    C A L                                      EGG                      E       L+  ELEE    L + +  ERV WD RL+  LMAKC VG  N GGRR    VP YD  GAK  +VC+GG+C  G+    R++SKRT GVCWC++CS   GK RA+HLC  C+     H AAA  AD  R Y  I+WA
Sbjct:    3 HQHHHKPKTFFWRRVFDQNLAQAISNAYLLYAAWAGIFATQCTAALEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDWEGGDEEEXXXXXXXXXXXXXXXXXGEGESTDAPLSKEELEEFGVLLKKCLAMERVTWDQRLSTHLMAKCNVGTLNSGGRRAGPVVPPYDSKGAKCARVCKGGSC--GNKTGGRYRSKRTTGVCWCNVCSGSKGKARALHLCHTCKKIPSAHGAAAEAADKKRKYKPIDWA 254          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5K756_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K756_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.320e-42
Identity = 104/222 (46.85%), Postives = 125/222 (56.31%), Query Frame = 1
Query:  250 IISRGPKKGTPCGKRAGGRVVGLCKHHDDKQQRRRTPAAQGGAXXXXXXXXXXXXXXXXXXXAAGGDDESNYGSDEEVGGGVDECDTRGAATKVEKEQGAHYRKASKIEDPKFREAYEKVWHLKNHD-QKPKKGQPPPPLGPHDPKGWVTDGLPVDETSPAFLRRNKHKGGRKFSLTSDLLERLPKVNRQGLQAVRDFVGGKGPYLLSSSSRSASRERPRTS 912
             IS G ++G  CG + G R  G CKHHD  Q+RR+T  A G A                     G  +  NY S+ E+GGG+DE  T GA   + K +  HY +ASKIED  FR A E VWHLK     KPK G+PPPP  P DPKGWV +GLP DE+S  + RR+KH GG  FSL+  L   LPKV++QGL  +R FV GKG  L     R  SR R RTS
Sbjct:  280 FISPGERRGEKCGNKVGDRTAGFCKHHDGLQKRRKT--ASGAALG-----------------VGGSVEAGNYDSESELGGGMDELQTPGARPFIAKSKELHYAQASKIEDEGFRRAQESVWHLKRIKLPKPKAGEPPPPPIPDDPKGWVFEGLPRDESSNPYKRRHKHPGGDNFSLSDQLKASLPKVDKQGLAVLRSFVNGKGGGLPFMFLRRLSRRRRRTS 482          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.030e-42
Identity = 122/333 (36.64%), Postives = 145/333 (43.54%), Query Frame = 1
Query: 1414 RRVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVLAERREGGHAA--------------GSAAG-------------------------------------------------------AAEQMGGGGD---------------------LTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEVPLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSICSNGLGKMRAVHLCKQCRASTQGHVAAALEAD-RHYTAIN 2139
            +R A  NGE ++S QP+ R  Y   MGGVDVADQRL  HAH H+PMT+FWRRVFDQKL  A+SNA+LLF  WA VL   C A L    + G A               G+AA                                                        AA Q GG GD                     LT+ EL E  + + + +K ERVDWD RLA  LM+ C V H      RT K V  Y   GAKS  VC GG C       +R    RTR VCWC  C++GLGK RA+ LC +C      +V A   A  R Y  I+
Sbjct:  275 KRAADNNGEKVSSSQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLFYEWAWVLATQCTAALEAATQHGGAGDXXXXXXXXXXXXXGAAADSCDLTVAELXARITPMTFFWRRVFDQKLSHAVSNAWLLFYEWAWVLATQCTAALEAATQHGGAGDXXXXXXXXXXXXXXAAADSCDLTVAELREFQSLVKKAMKVERVDWDRRLANHLMSLCSVCHTETRASRTTKPVETYSVKGAKSSLVCYGGICEE-TAKASRCTGSRTRVVCWCDTCTDGLGKDRALILCTKCNKVPAANVTARKHAAARKYKPIS 606          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5JTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.290e-42
Identity = 133/446 (29.82%), Postives = 168/446 (37.67%), Query Frame = 1
Query:  250 IISRGPKKGTPCGKRAGGRVVGLCKHHDDKQQRRRTPAAQGGAXXXXXXXXXXXXXXXXXXXAAGGDDESNYGSDEEVGGGVDECDTRGAATKVEKEQGAHYRKASKIEDPKFREAYEKVWHLKNHD-QKPKKGQPPPPLGPHDPKGWVTDGLPVDETSPAFLRRNKHKGGRKFSLTSDLLERLPKVNRQGLQAVRDFVGGKGPYLLSSSSRSASRERPRTSFYRRPTATPTSARRLPTRPRSRRCATRRRSGGRGSSGYLQPRTRTRRMWPTFSGITCTG*LASSSRAGSRRNGVSPTTGGITGPRLQPGTRMHAS*LVPPLLFSLLPHRAPDRQG*QEGPQLRLQASHQVQCCFLLRGFHMMSRWSSARLDLCFHHEVQPEEAHQTWRRVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQK 1584
             ISRG ++G  CG + GGR  G CKHHD  Q+ R+T  A G A                     G  +  NY S+  +GGG+D   T GA   + K +  HY  ASKIED   R A E VWHLK     +PK G+P PP  P DPKGWV +GLP DE+S  + RR+KH GG KFSL+  L   LPKV++QGL  +R FV GKG  L                                                                                                                   P +F                 +  L   H+V+                                   W+R A  NGE ++S QP+ R +Y   +GG++VADQRL  HAH H+PMT+FWR VFDQK
Sbjct:  185 FISRGARRGEKCGNKVGGRTAGFCKHHDGLQKGRKT--ASGAALG-----------------VGGSVEAGNYDSESGLGGGMDGLQTPGARPFIAKSKELHYAPASKIEDEGSRRAQESVWHLKRIKLPQPKAGEPSPPPIPDDPKGWVFEGLPRDESSGPYKRRHKHPGGDKFSLSDQLKASLPKVDKQGLAVLRSFVNGKGGDL-------------------------------------------------------------------------------------------------------------------PFMFL----------------EKTLMTVHEVK-----------------------------------WKRAADNNGEKVSSSQPLARKEYVKNIGGLEVADQRLGAHAHTHRPMTFFWRSVFDQK 445          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5KNU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.200e-33
Identity = 76/148 (51.35%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  864 PFQFFEECFPREAQDIVLQETNSYANFCAETTNPSPLQEVRHKKKKWRKGFQWIPTTENKDKKNVADFQRHHLYGVIGILVTGGLTQKRRFTNHWGYHRTTTTAGYENACLVTCSSSSILASSTSRPRQARLTRRTPTTTPSITSGTV 1307
            PF+FFEE FP   QDI+L +TN Y NFCAE TNPSPLQ+ RH+KKK R G  +  + +  D   V  F R H+YGV+GIL++ G+TQKRR T+HWG          E+ACL T S SS   SST         RR  +T PSITSG V
Sbjct:  247 PFKFFEEAFPPACQDIILTKTNKYVNFCAEETNPSPLQQPRHRKKKTRTGLSYGSSEDRPDGSKVYGFHRKHVYGVMGILISAGITQKRRLTDHWGVGDHDNYRMSESACLATSSRSSTAGSSTWLQSSRLSPRRIQSTIPSITSGRV 394          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.240e-32
Identity = 76/144 (52.78%), Postives = 95/144 (65.97%), Query Frame = 1
Query:  439 AGGDDESNYGSDEEVGGGVDECDTRGAATKVEKEQGAHYRKASKIEDPKFREAYEKVWHLKNHD--QKPKKGQPPPPLGPHDPKGWVTDGLPVDETSPAFLRRNKHKGGRKFSLTSDLLERLPKVNRQGLQAVRDFVGGKGPYL 864
            AG DD++N+GSD+E+GGGVDE  T GA  +  K Q +HY++AS IED  FREAYE VWHLK     +K K G  PP   PHD +GW + G+  D  S A+ RR+KH GG KF LT  L+ RLPK NR GL  +R+F+ GK   L
Sbjct:   55 AGVDDQANFGSDDELGGGVDELQTAGADAQQSKLQHSHYQRASVIEDQGFREAYESVWHLKKKSTSKKRKAGDAPPQPAPHDERGWTSAGMKKDVESEAYKRRHKHTGGDKFQLTPSLIARLPKPNRTGLNVLRNFIDGKDKSL 198          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.630e-28
Identity = 87/234 (37.18%), Postives = 117/234 (50.00%), Query Frame = 1
Query: 1417 RVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVLAERREGGHAAGSAAGAAEQMGGGGDLTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEV----PLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSICSNGLGKMRAVHLCKQCRASTQGHVAAA 2106
            R  G NGE L   QP  R+DY   M GVD+ADQ+   H H HK  T FWRRV+D KL+QA++NA+L+F  W E+L+          RE            + +  GG+L   ELE  S  LA + K ER  WD ++A +LMAKC V   NKGGRR   +     P++     KS ++C   TC          K++ T+G      C+ G      V +C+ C  S + H  AA
Sbjct:  270 RAKGRNGEPLDLQQPWTRMDYFLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLI----------RE--------VEPKKPITPGGELE--ELELASTELATLSKVERAVWDEQMATLLMAKCNVARPNKGGRRPASDNKPADPVWGSVTLKSGRLCLNPTC----------KTRSTKGCSCKQFCTRG--DKSGVLMCETCWKSPESHEQAA 471          
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.340e-27
Identity = 91/253 (35.97%), Postives = 120/253 (47.43%), Query Frame = 1
Query: 1417 RVAGANGEVLTSMQPVVRLDYTGGMGGVDVADQRLTPHAHVHKPMTYFWRRVFDQKLQQAISNAYLLFLMWAEVLLA*CKAVLAERREGGHAAGSAAGAAEQMGGGGDLTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKGGRRTYKEVPLYDGNGAK----SVKVCRGGTCVNGDDPTARFKSKRTRGVC-WCSICSNGLGKMRAVHLCKQCRASTQGHVAAA------LEADRHYTAINW 2142
            R  G NGE L   QP +R+DY   M GVD+ADQ+   H H HK  T FWRRV+D KL+QA++NA+L+F  W E+L+          RE          A + +  GG+L   ELE  S  LA + K ER  WD ++A +LMA+C V   NKGG+R     P  D   A     SV +  G  C+N    T   K    +  C W        G    V +C+ C  S + H  AA      +   R+ T   W
Sbjct:  594 RAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLI----------RE--------VEAKKPIAPGGELE--ELELASTELATLSKVERAVWDEQMATLLMAECNVARPNKGGKR-----PASDNKPADPVWGSVTLKSGRLCLNPTCKTTSMKGCSCKQFCTW--------GDKAGVLMCETCWKSPESHEQAAKAYWDSVSEGRNRTGFEW 813          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig907.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHH7_9PHAE4.090e-7635.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ5_9PHAE1.050e-5950.00DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JWA2_9PHAE6.910e-4340.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K756_9PHAE1.320e-4246.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDZ7_9PHAE2.030e-4236.64DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTJ5_9PHAE2.290e-4229.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNU4_9PHAE3.200e-3351.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5P5_9PHAE1.240e-3252.78DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JER6_9PHAE1.630e-2837.18DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5LEE0_9PHAE3.340e-2735.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig907contigP-littoralis_Contig907:38901..44112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2223
Hectar predicted targeting categoryother localisation
Exons5
Cds size429
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig907.8.1prot_P-littoralis_Contig907.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig907 38973..39401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.0616288-UTR-P-littoralis_Contig907:38900..389721680791813.0616288-UTR-P-littoralis_Contig907:38900..38972Pylaiella littoralis U1_48UTRP-littoralis_Contig907 38901..38972 -
1680791813.1219037-UTR-P-littoralis_Contig907:39401..397111680791813.1219037-UTR-P-littoralis_Contig907:39401..39711Pylaiella littoralis U1_48UTRP-littoralis_Contig907 39402..39711 -
1680791813.1401653-UTR-P-littoralis_Contig907:40991..410831680791813.1401653-UTR-P-littoralis_Contig907:40991..41083Pylaiella littoralis U1_48UTRP-littoralis_Contig907 40992..41083 -
1680791813.150581-UTR-P-littoralis_Contig907:41537..419341680791813.150581-UTR-P-littoralis_Contig907:41537..41934Pylaiella littoralis U1_48UTRP-littoralis_Contig907 41538..41934 -
1680791813.1624813-UTR-P-littoralis_Contig907:42273..425541680791813.1624813-UTR-P-littoralis_Contig907:42273..42554Pylaiella littoralis U1_48UTRP-littoralis_Contig907 42274..42554 -
1680791813.1814444-UTR-P-littoralis_Contig907:43470..441121680791813.1814444-UTR-P-littoralis_Contig907:43470..44112Pylaiella littoralis U1_48UTRP-littoralis_Contig907 43471..44112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791813.076533-CDS-P-littoralis_Contig907:38972..394011680791813.076533-CDS-P-littoralis_Contig907:38972..39401Pylaiella littoralis U1_48CDSP-littoralis_Contig907 38973..39401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig907.8.1

>prot_P-littoralis_Contig907.8.1 ID=prot_P-littoralis_Contig907.8.1|Name=mRNA_P-littoralis_Contig907.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MGGGGDLTLVELEELSAGLARMIKTERVDWDTRLAYILMAKCGVGHKNKG
GRRTYKEVPLYDGNGAKSVKVCRGGTCVNGDDPTARFKSKRTRGVCWCSI
CSNGLGKMRAVHLCKQCRASTQGHVAAALEADRHYTAINWAT*
back to top

mRNA from alignment at P-littoralis_Contig907:38901..44112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig907.8.1 ID=mRNA_P-littoralis_Contig907.8.1|Name=mRNA_P-littoralis_Contig907.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5212bp|location=Sequence derived from alignment at P-littoralis_Contig907:38901..44112- (Pylaiella littoralis U1_48)
GCACCTTGCGCTGCTAACACACACACCGCTGGGATAGGTACCCAAGAGGC GGCGCGTCAGCAGCAACAGCAGCAGCAGCAGCAGGGAGCAGTGCCTGCTA CCTTGCCACTCCCGCCCACCCAGCAACAGCAGCAGCAGCAACAGCAGGGA GCCGCACCTGCTACACTTCCGAACCCGCCGGCCCAGCAGCAGCAGCAGCA GCAGCCACTGCCTGTATCCCCTGCCACGGATGTCGAGTTCTGTCGTGGCA TTATATCGCGCGGCCCAAAGAAGGGCACACCCTGCGGTAAACGAGCGGGG GGCCGGGTTGTGGGGTTGTGCAAACATCACGATGATAAACAGCAGCGGCG CAGGACACCCGCGGCGCAGGGAGGCGCGGCGCAGGGAGGCGCGGCGCAGG GAGGCGCGGCGCAGGGAGGCGGGGCTCAGGCAGGCGCCGCTGGTGGAGAT GACGAGAGCAACTATGGATCGGACGAGGAGGTAGGAGGAGGTGTAGACGA ATGTGACACGAGAGGAGCAGCAACGAAGGTCGAGAAAGAACAAGGTGCAC ACTATCGGAAGGCTTCTAAAATCGAGGACCCCAAGTTCCGCGAGGCGTAC GAGAAAGTGTGGCACCTCAAGAACCACGACCAAAAGCCAAAGGTAAGCTG ACATGCAGCAGGAACAACTTGGTTGTGCATGTCCATCGGTGTAGATATTA AGGCAATTTGTAGACGAACAAGTTGGTAATATGCATGTGTTTCTACAGCA GTAGGGCAGCGCATGAAAGCACAACAAATCGCAGTTTGATTTTCCACGTG TATCTCGTTTGTTTTTTGCTGCTGTAGGGTGATGAACTCGTTTCTTCTCT CTCTTTCTCTCTCTCTCTGCTGACCCCCTGGTGCTTTCACTTTGAACACG ACGTGTAGACTGACATGACATGTACAGCAGTAAAAAATAGGATGACAACA CCGACGCGCATGTGTACGTTTACAACATGTTGTGTTCATGTCGTCTGTTT CGTGTTGCGCTGTTGATCCTTATTTTTTACCGAAAGCGACACGAGGTAGT TATTATGGTATCGTATCCTATCGTATCTTATCGTCTGATGGCCCTACGAG CATCCGAAAGTAAGCCCCCCCCCCCCTCTCTCTGTAGCAAGGAAAAAGAA GGACTAAAATAGTGTTGGCTCGGTAGATGTCGGTGGTAACGCCGCGGGTC GAGAAAATATTCGCAGTAGTGCATCATGTTTATTCCCCGGGCGACCGTGG GTGGTCGGAGGTGGGTGGTTGCGCAGAAAAAAAAACGGCGCCCAAACAGC ACCGCTGTCTGTGGACGGGGTTGGGGGAGGGGGGAGGTATCGCCAGAGGA CATGACGTTGTATGGGTATGGTACGTTTAACAACAAGCAATGGGAGCGAA ACATGGTTGAATTTAGCACCGCCAAGTATATGTTGGGATACGTGCCATTT CGCTTTTTTCGTTGAAAACACCACAAAACAAGTGTATAACTCGTGATCTT CTCTGACGCGACTATTTTGCATGTCCCGTTGCCCCTGGCGTGTGCGCTTG CTTCTCAGAAGGGCCAACCGCCCCCACCGCTAGGCCCGCATGACCCCAAG GGCTGGGTCACTGATGGACTGCCAGTTGACGAGACATCCCCAGCCTTCTT GCGCAGGAACAAGCACAAGGGAGGTCGGAAGTTCAGCCTTACCAGTGATC TGCTCGAGCGACTCCCGAAGGTGAACCGACAGGGCCTGCAAGCCGTGCGT GATTTTGTTGGCGGCAAGGGTCCGTATCTCCTTTCCAGTTCTTCGAGGAG TGCTTCCCGCGAGAGGCCCAGGACATCGTTCTACAGGAGGTACGTGATTG TTGGCCCGTTTTTTTTTTGAGAAGGTTGATGAGATCATGTTCATGTGTGA GGTCGGTCTGTAACACCAAAACACGTTCCCGGGTGGTCTCACCAGTCCAA ATGTTGTCGTTGCTCTTGCTGCTGCTGCTGCTGCTCCAGTTGGAAATACC ATGGAACAGAATGTTTTAATCGCGCTTGGATTTAGGATTCACCGTCGACA TGTTGTTGCAGCTGCGGCTGTTGGAGGCAACATGGAACATAATTTGTTTT TCGGGCACGCTGCACCTTTGACCCGATTTACTACCGTGTCACCCTTCCGT CGCCTCGGCCGATTCCTTTTTTTTTCAGACCAACAGCTACGCCAACTTCT GCGCGGAGACTACCAACCCGTCCCCGCTCCAGGAGGTGCGCCACAAGAAG AAGAAGTGGAGGAAGGGGTTCCAGTGGATACCTACAACCGAGAACAAGGA CAAGAAGAATGTGGCCGACTTTCAGCGGCATCACCTGTACGGGGTGATTG GCATCCTCGTCACGGGCGGGCTCACGCAGAAACGGCGTTTCACCAACCAC TGGGGGTATCACCGGACCACGACTACAGCCGGGTACGAGAATGCATGCCT CGTGACTTGTTCCTCCTCTTCTATTCTCGCTTCTTCCACATCGCGCCCCC GACAGGCAAGGTTGACAAGAAGGACCCCAACTACGACTCCAAGCATCACA TCAGGTACAGTGCTGTTTTCTGTTGGCATGTCGACTCCTCCTCTGTTCCC CCCGCATCCGCAGGAGGAAACCAAAAAAAATCATTGTTGTAGTAAATATT CTCGCATGAGCTCGACACGAAGGTCTAGCTTGTATCCAGTGATTAATAAT CAGGCACACTGGCGTGGTTGGAGATCGTAAATTTATATAGTGACGGATAC GCAGCGTCGAGGAAGTCAAGGAACGAAGCACAGCAGGGGGGGGGGGGCGG GGGGAGGATATGTGGTTGAAACTCGGCATGCAGCGTTTTGAGGGCGGCCA CCCCTTTTCGTTCCCCACAGCACCGAACGAATCGCACGTTAATTGCATGA CATGTGCTGCTTCGCCGCTAAATGTGATAACCCAAACGCCGTCAAAACGT TTGTCTTGTATAACTGACACCTCCAGGAAGTTCGAGGAGGCGCTGAACCT CGCATGGAACAAGCTTGCAGATCCTGGAGCGTGGCTTTCATATGATGAGC AGATGGTCAAGTGCACGTCTAGATCTATGTTTTCATCATGAGGTACAACC CGAAGAAGCCCATCAAACATGGTGAGTGGTTTATCTTGTTCGGAGTAACG TCACCGGTTGTTCATCAACCCTTCTGGCGTGTAGGAAGGGTTGTATGTTA CAGTTCTTCCGGGGTCGACACCATTTTGCTATTTGCTGTAAATACATAGG TCGGGGGTGTGTGAATATCATGCTGCGAATGTTACAAGCACCCGGTCGGT TGGATGCGGGTGAGGCTCTCGTTTGAAACTGTTCATCGCCGAAGATATGT CGGATTTGGCGGTGACCCCCCCCCCTCCCCTTCCCTGTAGACACGCCCTC ACCCTGTACCCCCCCCCCCAACCCGTTTTTAGTAGGCCCCCATGTGTTGT TTTGAGAAAGAAAACTGTTCGTCTAGTGTCAACTACCGTGTGGTTTGCGT GATTTGTGTGGCGATTACAGGGTTAACAGATTTTGTTCGTGTTCGCTCCT TCCTTTTCCTGTCCTTTTCCCCTCCTCGTATGTTCTCCTGAAATATTATT CAGGGATGAAAAGCTGGTGCACATGCTGTCCTTCGGGCTTTTGCTTCGTC CAATACATCGACGGTGGCTTATCCGGAGACCCGCAACGACGAGTGTATAC CGACTGCCCCCTCGGCAACACCGCAAGAACGGTTCTTCTCGTTGTGCTCG ACGTGTGCAAGCCGTTCTCGCAGAAGATCATCGACTCCGGGGTATCCGTG GCCATGGACAACTACTTCACCTCGGCGGCTCTGTTTCTCTGCCTCGCGAC CCGCGACATTTTTGCCGTGGGCACGCTGCGAAGCAACCGAGTGGGCTTGG ACGGAGCGCAGAAGCTCTGGAAGGACAAGGGCATGAAGGCGACCGAGCGC GGAGAAATGACGATGGCGCGCTCGCCGGCGGAACTTGCAGTGACCACCTG GGTCGACTCGCAAGTGGTGCACTTCTTATCGACCAAGCACATTTTCGAAA CCGACTGGGTGCCTGTCGTGTACACGTGAGTGCGTTCTGTAGTTGGACTG GCTTGTCACGTTTCCAGCCCCCCACCCTCCCACTACAGTAGGGTCGATTC CCGTTGAGTGCCCTTTGTTTCTTTTGCAGTACGAGTGCCATTTTTTTTGT TTTTTTTGCAGTACGGCCACGAAATCCCCTGCCAAAATGGGGCTTCGTTA GGTTGGCTCCTAAGCGGAGCGGTCGTTTCCCTGCACGAGGCATAATACGC TTTTTTTTTCCTTGTATCAGGCATGCATCCTGCGCGCGCAACCGTGTAAT CAATCTCCGCTCCCGCTTCGTGCGCATATCTACCGTTTATGCCATCCGCA GGAGACGTGTAGCAGGCGCGAACGGGGAGGTGCTGACGAGCATGCAGCCG GTTGTTCGTTTGGACTACACGGGTGGCATGGGTGGTGTAGACGTCGCCGA TCAGCGGCTTACCCCACACGCCCACGTGCACAAACCCATGACGTATTTCT GGCGCCGTGTATTCGACCAGAAGTTGCAGCAGGCCATCAGCAACGCGTAC CTTCTCTTCCTGATGTGGGCGGAAGTGTTGCTTGCGTAATGCAAGGCGGT GTTGGCGGAGCGCCGGGAGGGGGGCCATGCTGCGGGCTCAGCAGCGGGCG CTGCCGAGCAGATGGGGGGTGGGGGTGACCTTACCTTGGTAGAGCTTGAG GAACTCAGTGCTGGGTTGGCAAGAATGATCAAGACAGAACGCGTAGACTG GGACACCAGACTGGCATACATCCTCATGGCCAAGTGCGGTGTCGGCCATA AGAACAAGGGGGGGAGGCGTACGTATAAGGAGGTCCCTTTGTATGACGGC AACGGCGCAAAATCGGTGAAGGTGTGTAGGGGAGGGACGTGCGTGAATGG CGACGACCCCACGGCCCGTTTCAAATCGAAGAGGACACGTGGGGTTTGTT GGTGCAGTATCTGTAGCAACGGACTAGGGAAGATGAGGGCCGTCCACCTC TGCAAGCAGTGCCGCGCGTCCACACAAGGGCACGTGGCAGCCGCACTGGA GGCCGACCGTCATTACACGGCCATCAACTGGGCGACGTGATTGTCTTTGC TGGACTTTTTCGTGGCAAAACTGCATATACCTTGTTTTCTCTAGCGATGT GGATGGGGGTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig907:38901..44112-

>mRNA_P-littoralis_Contig907.8.1 ID=mRNA_P-littoralis_Contig907.8.1|Name=mRNA_P-littoralis_Contig907.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig907:38901..44112- (Pylaiella littoralis U1_48)
ATGGGGGGTGGGGGTGACCTTACCTTGGTAGAGCTTGAGGAACTCAGTGC
TGGGTTGGCAAGAATGATCAAGACAGAACGCGTAGACTGGGACACCAGAC
TGGCATACATCCTCATGGCCAAGTGCGGTGTCGGCCATAAGAACAAGGGG
GGGAGGCGTACGTATAAGGAGGTCCCTTTGTATGACGGCAACGGCGCAAA
ATCGGTGAAGGTGTGTAGGGGAGGGACGTGCGTGAATGGCGACGACCCCA
CGGCCCGTTTCAAATCGAAGAGGACACGTGGGGTTTGTTGGTGCAGTATC
TGTAGCAACGGACTAGGGAAGATGAGGGCCGTCCACCTCTGCAAGCAGTG
CCGCGCGTCCACACAAGGGCACGTGGCAGCCGCACTGGAGGCCGACCGTC
ATTACACGGCCATCAACTGGGCGACGTGA
back to top