mRNA_P-littoralis_Contig907.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig907.2.1
Unique NamemRNA_P-littoralis_Contig907.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A0F9VZ58_9ZZZZ (ApaG domain-containing protein n=29 Tax=root TaxID=1 RepID=A0A0F9VZ58_9ZZZZ)

HSP 1 Score: 223 bits (567), Expect = 2.980e-73
Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            PSYRIDESND E RYVFSY VTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEV ISPFRLAAPLQLH
Sbjct:   12 PSYRIDESNDVELRYVFSYTVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVLISPFRLAAPLQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A0P8CSG9_9GAMM (ApaG protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A0P8CSG9_9GAMM)

HSP 1 Score: 205 bits (521), Expect = 3.080e-66
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR DES++AESRYVFSY V+VHNKSPHSVQLMARYWKITQG G+ QEVRGKGVVGQQPLIGPGQ FRYTSRA+LQTPVGVMEG YTLLDTSTQR FEV ISPFRLA PLQLH
Sbjct:   12 PEYRADESSEAESRYVFSYTVSVHNKSPHSVQLMARYWKITQGGGEYQEVRGKGVVGQQPLIGPGQQFRYTSRAMLQTPVGVMEGVYTLLDTSTQRVFEVAISPFRLAVPLQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A3Q8WF80_9GAMM (Protein ApaG n=22 Tax=Halomonas TaxID=2745 RepID=A0A3Q8WF80_9GAMM)

HSP 1 Score: 198 bits (504), Expect = 1.200e-63
Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR  ES+D+ESR+VFSY VTVHN+SPHSVQLMARYWKITQG+GD QEVRGKGVVGQQPLIGPGQ FRYTSRAILQTPVGVMEGAYTLL+T TQRAFEV I+PFRLA P QLH
Sbjct:   12 PEYRAAESDDSESRFVFSYTVTVHNQSPHSVQLMARYWKITQGNGDSQEVRGKGVVGQQPLIGPGQRFRYTSRAILQTPVGVMEGAYTLLNTYTQRAFEVPIAPFRLAVPRQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A3D0KBZ0_9GAMM (Protein ApaG n=9 Tax=Halomonas TaxID=2745 RepID=A0A3D0KBZ0_9GAMM)

HSP 1 Score: 197 bits (502), Expect = 2.420e-63
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR  ES+D ESR+VFSY VTVHN+SPHSVQLMARYWKITQG+GD QEVRGKGVVGQQPLIGPGQ FRYTSRAILQTPVGVMEGAYTLL+T TQRAFEV I+PFRLA P QLH
Sbjct:   12 PEYRAAESDDRESRFVFSYTVTVHNQSPHSVQLMARYWKITQGNGDSQEVRGKGVVGQQPLIGPGQRFRYTSRAILQTPVGVMEGAYTLLNTYTQRAFEVPIAPFRLAVPRQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: UPI00201EB74A (Co2+/Mg2+ efflux protein ApaG n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201EB74A)

HSP 1 Score: 197 bits (500), Expect = 4.890e-63
Identity = 95/114 (83.33%), Postives = 103/114 (90.35%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR  ESNDAESRYVFSY VT+HN+SPHSVQLMARYWKITQG+GD QE+RGKGVVGQQPLIGPGQ FRYTSRAILQTPVGVMEGAYTLL+T TQRAF+V ++PFRLA   QLH
Sbjct:   12 PEYRPSESNDAESRYVFSYTVTLHNQSPHSVQLMARYWKITQGNGDSQEIRGKGVVGQQPLIGPGQRFRYTSRAILQTPVGVMEGAYTLLNTYTQRAFDVPVAPFRLAVAKQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: UPI001D0B95F8 (Co2+/Mg2+ efflux protein ApaG n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0B95F8)

HSP 1 Score: 197 bits (500), Expect = 4.890e-63
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR +ES+D+E+RYVFSY VTVHN+SPHSVQLMARYWKITQGSGD QEVRGKGVVGQQPLIGPGQ FRYTSRAILQTPVGVMEGAYTLLD +TQRAF+V +  FRLAAP +LH
Sbjct:   12 PEYRAEESSDSEARYVFSYTVTVHNQSPHSVQLMARYWKITQGSGDAQEVRGKGVVGQQPLIGPGQRFRYTSRAILQTPVGVMEGAYTLLDITTQRAFDVPVVAFRLAAPSKLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: H0J4F3_9GAMM (CO2+/MG2+ efflux protein ApaG n=6 Tax=Halomonas TaxID=2745 RepID=H0J4F3_9GAMM)

HSP 1 Score: 196 bits (499), Expect = 6.940e-63
Identity = 96/114 (84.21%), Postives = 102/114 (89.47%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P Y   ES+DAESRYVFSY VTVHN+SPHSVQLMARYWKITQG+GD QEVRGKGVVGQQPLIGPGQ FRYTSR ILQ+PVGVMEGAYTLLDT TQRAF+V I+PFRLA P QLH
Sbjct:   12 PEYCSGESSDAESRYVFSYTVTVHNQSPHSVQLMARYWKITQGNGDSQEVRGKGVVGQQPLIGPGQRFRYTSRVILQSPVGVMEGAYTLLDTYTQRAFDVSIAPFRLAVPRQLH 125
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BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A7G7ZAS3_9GAMM (Co2+/Mg2+ efflux protein ApaG n=4 Tax=Halomonas TaxID=2745 RepID=A0A7G7ZAS3_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 1.150e-61
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR +ES++AESRYVFSY V+VHN SPHSVQLMARYWKIT GSG+ QEVRGKGVVGQQPLIGPGQ FRYTSRA+LQTPVGVMEG YTLLDTSTQR FEV I  FRLA P QLH
Sbjct:   12 PEYRAEESSEAESRYVFSYTVSVHNGSPHSVQLMARYWKITHGSGEHQEVRGKGVVGQQPLIGPGQRFRYTSRAVLQTPVGVMEGVYTLLDTSTQRVFEVAIPTFRLAVPYQLH 125
[Close]
BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A7Z7I018_9GAMM (Protein ApaG n=2 Tax=Halomonas TaxID=2745 RepID=A0A7Z7I018_9GAMM)

HSP 1 Score: 193 bits (490), Expect = 1.630e-61
Identity = 93/114 (81.58%), Postives = 99/114 (86.84%), Query Frame = 3 
Query:   33 PSYRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            P YR +ES++AESRYVFSY + V N SPHSVQLMARYWKITQG G+ QEVRGKGVVGQQPLIGPGQ FRYTSRA+LQTPVGVMEG YTLLDTSTQR FEV I PFRLA P QLH
Sbjct:   12 PEYRTEESSEAESRYVFSYTINVRNNSPHSVQLMARYWKITQGGGEYQEVRGKGVVGQQPLIGPGQQFRYTSRAMLQTPVGVMEGVYTLLDTSTQRVFEVAIPPFRLAVPHQLH 125
[Close]
BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Match: A0A7X4JXU3_9GAMM (Co2+/Mg2+ efflux protein ApaG n=2 Tax=Halomonas TaxID=2745 RepID=A0A7X4JXU3_9GAMM)

HSP 1 Score: 191 bits (484), Expect = 1.340e-60
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 3 
Query:   39 YRIDESNDAESRYVFSYIVTVHNKSPHSVQLMARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVMEGAYTLLDTSTQRAFEVGISPFRLAAPLQLH 374
            Y  DES+ A++R+VFSY VTV NKSPHSVQL+ARYWKITQGSG CQEVRGKGVVGQQPLIGPGQ FRYTSRAILQTPVG MEGAYTLLDTSTQRAF+V ++PF LAAPL +H
Sbjct:   14 YNADESSVADARHVFSYRVTVENKSPHSVQLLARYWKITQGSGACQEVRGKGVVGQQPLIGPGQRFRYTSRAILQTPVGTMEGAYTLLDTSTQRAFDVAVAPFSLAAPLAIH 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig907.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9VZ58_9ZZZZ2.980e-7396.49ApaG domain-containing protein n=29 Tax=root TaxID... [more]
A0A0P8CSG9_9GAMM3.080e-6686.84ApaG protein n=2 Tax=unclassified Halomonas TaxID=... [more]
A0A3Q8WF80_9GAMM1.200e-6385.09Protein ApaG n=22 Tax=Halomonas TaxID=2745 RepID=A... [more]
A0A3D0KBZ0_9GAMM2.420e-6385.09Protein ApaG n=9 Tax=Halomonas TaxID=2745 RepID=A0... [more]
UPI00201EB74A4.890e-6383.33Co2+/Mg2+ efflux protein ApaG n=1 Tax=Halomonas ol... [more]
UPI001D0B95F84.890e-6383.33Co2+/Mg2+ efflux protein ApaG n=1 Tax=Halomonas ma... [more]
H0J4F3_9GAMM6.940e-6384.21CO2+/MG2+ efflux protein ApaG n=6 Tax=Halomonas Ta... [more]
A0A7G7ZAS3_9GAMM1.150e-6182.46Co2+/Mg2+ efflux protein ApaG n=4 Tax=Halomonas Ta... [more]
A0A7Z7I018_9GAMM1.630e-6181.58Protein ApaG n=2 Tax=Halomonas TaxID=2745 RepID=A0... [more]
A0A7X4JXU3_9GAMM1.340e-6082.14Co2+/Mg2+ efflux protein ApaG n=2 Tax=Halomonas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig907contigP-littoralis_Contig907:564..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380358.JADJ01000017_gene1600
Preferred nameapaG
PFAMsDUF525
Model size377
Max annot lvl135619|Oceanospirillales
KEGG koko:K06195
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.92e-50
EggNOG OGsCOG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,1S8SE@1236|Gammaproteobacteria,1XKBU@135619|Oceanospirillales
DescriptionApaG domain
Cds size246
COG categoryP
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.8971653-UTR-P-littoralis_Contig907:563..6941680791812.8971653-UTR-P-littoralis_Contig907:563..694Pylaiella littoralis U1_48UTRP-littoralis_Contig907 564..694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.9143093-CDS-P-littoralis_Contig907:694..9401680791812.9143093-CDS-P-littoralis_Contig907:694..940Pylaiella littoralis U1_48CDSP-littoralis_Contig907 695..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig907.2.1prot_P-littoralis_Contig907.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig907 695..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig907.2.1

>prot_P-littoralis_Contig907.2.1 ID=prot_P-littoralis_Contig907.2.1|Name=mRNA_P-littoralis_Contig907.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MARYWKITQGSGDCQEVRGKGVVGQQPLIGPGQSFRYTSRAILQTPVGVM
EGAYTLLDTSTQRAFEVGISPFRLAAPLQLH*
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mRNA from alignment at P-littoralis_Contig907:564..940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig907.2.1 ID=mRNA_P-littoralis_Contig907.2.1|Name=mRNA_P-littoralis_Contig907.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=377bp|location=Sequence derived from alignment at P-littoralis_Contig907:564..940+ (Pylaiella littoralis U1_48)
GTGAGCAGCCTAGCAATTGAGGTTAGTGTTACCCCAGCTACCGCATCGAT
GAATCGAACGATGCGGAGTCGCGCTATGTGTTTAGTTACATCGTGACTGT
GCACAATAAAAGCCCCCATAGTGTTCAGCTTATGGCACGCTATTGGAAGA
TCACCCAGGGCAGTGGGGACTGCCAGGAAGTGCGGGGTAAAGGAGTGGTT
GGTCAGCAGCCACTGATTGGCCCCGGCCAAAGCTTTCGCTATACCAGCCG
TGCCATTCTTCAGACGCCAGTAGGGGTAATGGAAGGTGCCTATACGTTAT
TAGACACCTCCACCCAACGTGCCTTTGAGGTGGGGATTTCGCCTTTCAGG
CTGGCAGCCCCGCTTCAACTTCACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig907:564..940+

>mRNA_P-littoralis_Contig907.2.1 ID=mRNA_P-littoralis_Contig907.2.1|Name=mRNA_P-littoralis_Contig907.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig907:564..940+ (Pylaiella littoralis U1_48)
ATGGCACGCTATTGGAAGATCACCCAGGGCAGTGGGGACTGCCAGGAAGT
GCGGGGTAAAGGAGTGGTTGGTCAGCAGCCACTGATTGGCCCCGGCCAAA
GCTTTCGCTATACCAGCCGTGCCATTCTTCAGACGCCAGTAGGGGTAATG
GAAGGTGCCTATACGTTATTAGACACCTCCACCCAACGTGCCTTTGAGGT
GGGGATTTCGCCTTTCAGGCTGGCAGCCCCGCTTCAACTTCACTAG
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