mRNA_P-littoralis_Contig907.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig907.1.1
Unique NamemRNA_P-littoralis_Contig907.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A1R4I5W2_9GAMM (Ribosomal RNA small subunit methyltransferase A n=11 Tax=Halomonadaceae TaxID=28256 RepID=A0A1R4I5W2_9GAMM)

HSP 1 Score: 259 bits (661), Expect = 2.310e-84
Identity = 129/152 (84.87%), Postives = 133/152 (87.50%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKGVCEPRNSGKLG 456
            GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLL AG+A+ DMHFMLQKEVVERLAA+ GGTDWGRLSVMAQYYCHV+QLFIVPPEAFVPRPKVDSAIVRLTPH  LPHVADDPALLFELVKLAFGQRRK      KG   P     LG
Sbjct:   89 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLTAGNAIADMHFMLQKEVVERLAAQPGGTDWGRLSVMAQYYCHVDQLFIVPPEAFVPRPKVDSAIVRLTPHASLPHVADDPALLFELVKLAFGQRRKTLRNNFKGRVSPETLEALG 240
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: H0J4F2_9GAMM (Ribosomal RNA small subunit methyltransferase A n=41 Tax=Halomonadaceae TaxID=28256 RepID=H0J4F2_9GAMM)

HSP 1 Score: 254 bits (648), Expect = 2.100e-82
Identity = 125/141 (88.65%), Postives = 129/141 (91.49%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLL  G A+ DMHFMLQKEVVERLAAE G TDWGRLSVMAQYYCHV+QLFIVPPEAFVPRPKVDSAIVRLTPH++LPH ADDPALLFELVKLAFGQRRK     LKG
Sbjct:   89 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLTMGTAIADMHFMLQKEVVERLAAEPGSTDWGRLSVMAQYYCHVDQLFIVPPEAFVPRPKVDSAIVRLTPHDRLPHTADDPALLFELVKLAFGQRRKTLRNNLKG 229
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A0D5M0N2_9GAMM (Ribosomal RNA small subunit methyltransferase A n=30 Tax=root TaxID=1 RepID=A0A0D5M0N2_9GAMM)

HSP 1 Score: 250 bits (639), Expect = 4.880e-81
Identity = 125/152 (82.24%), Postives = 131/152 (86.18%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKGVCEPRNSGKLG 456
            GDALKFDFAALKGDGPALRVVGNLPYNISTPLI+HLLAAG A+EDMHFMLQKEVVERLAAE GG DWGRLSVMAQYYC VEQLFIVPPEAFVP+PKV+SAIVRLTPH  LPH A+DP LLFELVKLAFGQRRK      KG   P    +LG
Sbjct:   88 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIIHLLAAGSAIEDMHFMLQKEVVERLAAEPGGADWGRLSVMAQYYCSVEQLFIVPPEAFVPQPKVESAIVRLTPHATLPHTAEDPTLLFELVKLAFGQRRKTLRNNFKGRVSPEILEELG 239
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A0P8BD60_9GAMM (Ribosomal RNA small subunit methyltransferase A n=9 Tax=Halomonas TaxID=2745 RepID=A0A0P8BD60_9GAMM)

HSP 1 Score: 245 bits (625), Expect = 5.710e-79
Identity = 122/141 (86.52%), Postives = 124/141 (87.94%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDALKFDF ALKG+GP LRVVGNLPYNISTPLIVHLL  GDA+ DMHFMLQKEVVERLAAE GG DWGRLSVMAQYYC VEQLFIVPPEAFVPRP VDSAIVRLTPH  LPH ADDPALLFELVKLAFGQRRK     LKG
Sbjct:   89 GDALKFDFTALKGEGPGLRVVGNLPYNISTPLIVHLLTMGDAIADMHFMLQKEVVERLAAEPGGPDWGRLSVMAQYYCQVEQLFIVPPEAFVPRPSVDSAIVRLTPHAALPHPADDPALLFELVKLAFGQRRKTLRNNLKG 229
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: UPI001D0AC5D7 (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0AC5D7)

HSP 1 Score: 239 bits (609), Expect = 1.790e-76
Identity = 120/141 (85.11%), Postives = 124/141 (87.94%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDALKFDF ALKGDGPALRVVGNLPYNISTPLIVHLL  G A+ DMHFMLQKEVVERLAAE GGTD+GR +VMAQYYC VEQLFIVPPEAFVPRPKVDSAIVRLTP + LPH A DPALLFELVKLAFGQRRK     LKG
Sbjct:   89 GDALKFDFKALKGDGPALRVVGNLPYNISTPLIVHLLGMGTAIRDMHFMLQKEVVERLAAEPGGTDYGRFTVMAQYYCQVEQLFIVPPEAFVPRPKVDSAIVRLTPFDTLPHPASDPALLFELVKLAFGQRRKTLRNNLKG 229
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A7Y3TXC7_9GAMM (Ribosomal RNA small subunit methyltransferase A n=2 Tax=Halomonas TaxID=2745 RepID=A0A7Y3TXC7_9GAMM)

HSP 1 Score: 236 bits (603), Expect = 1.280e-75
Identity = 119/141 (84.40%), Postives = 123/141 (87.23%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDAL FDFAALKGDGPALRVVGNLPYNISTPLIVHLL A +AV DMHFMLQKEVVERLAAE GG DWGRLSVMAQYYC VEQLFIVPPEAFVPRPKVDSAIVRLTPH ++PH ADD  LLF LVK+AFGQRRK      KG
Sbjct:   88 GDALAFDFAALKGDGPALRVVGNLPYNISTPLIVHLLQAENAVADMHFMLQKEVVERLAAEPGGPDWGRLSVMAQYYCQVEQLFIVPPEAFVPRPKVDSAIVRLTPHAQIPHPADDTELLFALVKMAFGQRRKTLRNNFKG 228
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A368U7Q7_9GAMM (Ribosomal RNA small subunit methyltransferase A n=2 Tax=Halomonas TaxID=2745 RepID=A0A368U7Q7_9GAMM)

HSP 1 Score: 234 bits (597), Expect = 1.010e-74
Identity = 114/152 (75.00%), Postives = 129/152 (84.87%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKGVCEPRNSGKLG 456
            GDALKFDFAAL+G+GPALRVVGNLPYNISTPLIVHLL+ GDA+ DMHFMLQKEVVERLAA+ GG DWGRLSVMAQY+C V+QLF+VPPEAFVPRPKVDSAIVRLTPH +LPH+A D  +LF++V+ AFGQRRK     LKG+        LG
Sbjct:   88 GDALKFDFAALRGEGPALRVVGNLPYNISTPLIVHLLSMGDAIGDMHFMLQKEVVERLAAQPGGPDWGRLSVMAQYHCRVDQLFVVPPEAFVPRPKVDSAIVRLTPHAQLPHIAQDTQVLFDMVRTAFGQRRKTLRNNLKGLIPAEQLEGLG 239
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A7X4JY14_9GAMM (Ribosomal RNA small subunit methyltransferase A n=3 Tax=Halomonas TaxID=2745 RepID=A0A7X4JY14_9GAMM)

HSP 1 Score: 233 bits (595), Expect = 2.030e-74
Identity = 119/141 (84.40%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDAL FDFAALKG+GP LRVVGNLPYNISTPLIVHLL A +AV DMHFMLQKEVVERLAAE GG DWGRLSVMAQYYC VEQLFIVPPEAFVPRPKVDSAIVRLTPH +LPH A D ALLF LVK AFGQRRK     LKG
Sbjct:   88 GDALAFDFAALKGEGPPLRVVGNLPYNISTPLIVHLLEAENAVADMHFMLQKEVVERLAAEPGGADWGRLSVMAQYYCQVEQLFIVPPEAFVPRPKVDSAIVRLTPHAELPHRAHDTALLFSLVKQAFGQRRKTLRNNLKG 228
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A1M7FZM9_9GAMM (Ribosomal RNA small subunit methyltransferase A n=1 Tax=Halomonas subglaciescola TaxID=29571 RepID=A0A1M7FZM9_9GAMM)

HSP 1 Score: 233 bits (594), Expect = 3.260e-74
Identity = 115/141 (81.56%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKG 423
            GDALK+DFA L+GDG  LRVVGNLPYNISTPLI+HLL AG AV DMHFMLQKEVVER+AAE GG+DWGRLSVMAQYYC VEQLF VPPEAFVP P V+SAIVRLTPH +LPHVADDP LLFELVK AFGQRRK     LKG
Sbjct:   88 GDALKYDFAELRGDGAPLRVVGNLPYNISTPLIIHLLGAGSAVADMHFMLQKEVVERMAAEPGGSDWGRLSVMAQYYCQVEQLFTVPPEAFVPSPAVESAIVRLTPHAELPHVADDPTLLFELVKQAFGQRRKTLRNNLKG 228
[Close]
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Match: A0A510X6Y6_9GAMM (Ribosomal RNA small subunit methyltransferase A n=3 Tax=Halomonas TaxID=2745 RepID=A0A510X6Y6_9GAMM)

HSP 1 Score: 228 bits (582), Expect = 1.670e-72
Identity = 115/152 (75.66%), Postives = 124/152 (81.58%), Query Frame = 1 
Query:    1 GDALKFDFAALKGDGPALRVVGNLPYNISTPLIVHLLAAGDAVEDMHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRPKVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKGVCEPRNSGKLG 456
            GDALKFDF AL+ +GPALRVVGNLPYNISTPLIVHLL AGDA+ DMHFMLQKEVVERLAA     DWGRLSVMAQYYC V+ LF+VPPEAFVPRPKVDSAIVRLTPHE+LPH A D ALLF+LV+ AFGQRRK     LKG        +LG
Sbjct:   89 GDALKFDFRALRREGPALRVVGNLPYNISTPLIVHLLGAGDAIADMHFMLQKEVVERLAASPDSADWGRLSVMAQYYCRVDSLFVVPPEAFVPRPKVDSAIVRLTPHERLPHRARDEALLFDLVREAFGQRRKTLRNNLKGRISAEALSELG 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig907.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R4I5W2_9GAMM2.310e-8484.87Ribosomal RNA small subunit methyltransferase A n=... [more]
H0J4F2_9GAMM2.100e-8288.65Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A0D5M0N2_9GAMM4.880e-8182.24Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A0P8BD60_9GAMM5.710e-7986.52Ribosomal RNA small subunit methyltransferase A n=... [more]
UPI001D0AC5D71.790e-7685.1116S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- ... [more]
A0A7Y3TXC7_9GAMM1.280e-7584.40Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A368U7Q7_9GAMM1.010e-7475.00Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A7X4JY14_9GAMM2.030e-7484.40Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A1M7FZM9_9GAMM3.260e-7481.56Ribosomal RNA small subunit methyltransferase A n=... [more]
A0A510X6Y6_9GAMM1.670e-7275.66Ribosomal RNA small subunit methyltransferase A n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig907contigP-littoralis_Contig907:1..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog574966.KB898647_gene2302
Preferred nameksgA
PFAMsRrnaAD
Model size553
Max annot lvl135619|Oceanospirillales
KEGG rclassRC00003,RC03257
KEGG koko:K02528
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.32e-53
EggNOG OGsCOG0030@1|root,COG0030@2|Bacteria,1MVNU@1224|Proteobacteria,1RMHW@1236|Gammaproteobacteria,1XIZA@135619|Oceanospirillales
EC2.1.1.182
DescriptionSpecifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
Cds size363
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.8247783-UTR-P-littoralis_Contig907:0..1351680791812.8247783-UTR-P-littoralis_Contig907:0..135Pylaiella littoralis U1_48UTRP-littoralis_Contig907 1..135 +
1680791812.8606567-UTR-P-littoralis_Contig907:498..5531680791812.8606567-UTR-P-littoralis_Contig907:498..553Pylaiella littoralis U1_48UTRP-littoralis_Contig907 499..553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.8448102-CDS-P-littoralis_Contig907:135..4981680791812.8448102-CDS-P-littoralis_Contig907:135..498Pylaiella littoralis U1_48CDSP-littoralis_Contig907 136..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig907.1.1prot_P-littoralis_Contig907.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig907 136..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig907.1.1

>prot_P-littoralis_Contig907.1.1 ID=prot_P-littoralis_Contig907.1.1|Name=mRNA_P-littoralis_Contig907.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MHFMLQKEVVERLAAEHGGTDWGRLSVMAQYYCHVEQLFIVPPEAFVPRP
KVDSAIVRLTPHEKLPHVADDPALLFELVKLAFGQRRKRCAITLKGVCEP
RNSGKLGYRSSSPSTNVERG*
back to top

mRNA from alignment at P-littoralis_Contig907:1..553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig907.1.1 ID=mRNA_P-littoralis_Contig907.1.1|Name=mRNA_P-littoralis_Contig907.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=553bp|location=Sequence derived from alignment at P-littoralis_Contig907:1..553+ (Pylaiella littoralis U1_48)
GGTGACGCGCTTAAGTTTGATTTTGCTGCGTTGAAAGGCGATGGCCCTGC
GCTTCGCGTGGTGGGAAATCTGCCCTATAACATCTCCACGCCGCTGATTG
TGCACCTGCTCGCCGCAGGTGACGCAGTGGAGGACATGCACTTTATGCTA
CAAAAAGAGGTGGTTGAGCGCTTAGCTGCAGAGCACGGTGGAACTGATTG
GGGACGCCTTTCGGTGATGGCGCAGTACTACTGTCATGTCGAGCAGCTGT
TTATTGTGCCACCGGAAGCTTTTGTGCCAAGGCCCAAAGTCGACTCCGCG
ATTGTACGCTTAACGCCCCATGAGAAGCTGCCTCATGTCGCAGATGATCC
TGCGCTACTGTTTGAGTTGGTAAAACTGGCCTTTGGCCAGCGGCGTAAAC
GCTGCGCAATAACGTTAAAGGGCGTGTGTGAGCCACGAAACTCTGGAAAG
CTTGGGTATCGATCCAGTTCGCCGTCCACAAACGTTGAGCGTGGCTGAGT
ATGTTGCCATTGCCAATCGTGTCGCCGCCGATGAGCAAGCGAGCGGCGAG
AGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig907:1..553+

>mRNA_P-littoralis_Contig907.1.1 ID=mRNA_P-littoralis_Contig907.1.1|Name=mRNA_P-littoralis_Contig907.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig907:1..553+ (Pylaiella littoralis U1_48)
ATGCACTTTATGCTACAAAAAGAGGTGGTTGAGCGCTTAGCTGCAGAGCA
CGGTGGAACTGATTGGGGACGCCTTTCGGTGATGGCGCAGTACTACTGTC
ATGTCGAGCAGCTGTTTATTGTGCCACCGGAAGCTTTTGTGCCAAGGCCC
AAAGTCGACTCCGCGATTGTACGCTTAACGCCCCATGAGAAGCTGCCTCA
TGTCGCAGATGATCCTGCGCTACTGTTTGAGTTGGTAAAACTGGCCTTTG
GCCAGCGGCGTAAACGCTGCGCAATAACGTTAAAGGGCGTGTGTGAGCCA
CGAAACTCTGGAAAGCTTGGGTATCGATCCAGTTCGCCGTCCACAAACGT
TGAGCGTGGCTGA
back to top