mRNA_P-littoralis_Contig905.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig905.9.1
Unique NamemRNA_P-littoralis_Contig905.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig905.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig905contigP-littoralis_Contig905:83143..86871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1074
Hectar predicted targeting categoryother localisation
Exons2
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.1771183-UTR-P-littoralis_Contig905:83142..833071680791812.1771183-UTR-P-littoralis_Contig905:83142..83307Pylaiella littoralis U1_48UTRP-littoralis_Contig905 83143..83307 +
1680791812.20154-UTR-P-littoralis_Contig905:83916..839311680791812.20154-UTR-P-littoralis_Contig905:83916..83931Pylaiella littoralis U1_48UTRP-littoralis_Contig905 83917..83931 +
1680791812.215546-UTR-P-littoralis_Contig905:86586..868711680791812.215546-UTR-P-littoralis_Contig905:86586..86871Pylaiella littoralis U1_48UTRP-littoralis_Contig905 86587..86871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.1897178-CDS-P-littoralis_Contig905:83307..839161680791812.1897178-CDS-P-littoralis_Contig905:83307..83916Pylaiella littoralis U1_48CDSP-littoralis_Contig905 83308..83916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig905.9.1prot_P-littoralis_Contig905.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig905 83308..83916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig905.9.1

>prot_P-littoralis_Contig905.9.1 ID=prot_P-littoralis_Contig905.9.1|Name=mRNA_P-littoralis_Contig905.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MRGGPNVVDLSKIILADGSCFANLSLLQATERLAPLVGSWGNQTEMSAFA
AMAAAVTASDATIGTAAFKKAAGPRAMLLWGLEALRDHLHERGAKVFLPG
TKAPAAATPASAEQQSPPAPAAAPQVSPEASAQQTIPAAAAPTQDQPAGA
GEQETASERGSVAEEAVVVTTKVVAPTQGQRALAVDAVQREENRKLVALV
QS*
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mRNA from alignment at P-littoralis_Contig905:83143..86871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig905.9.1 ID=mRNA_P-littoralis_Contig905.9.1|Name=mRNA_P-littoralis_Contig905.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3729bp|location=Sequence derived from alignment at P-littoralis_Contig905:83143..86871+ (Pylaiella littoralis U1_48)
TGAGACAGCCAGCTCGGGTGGGGTAAAGCCTCTATAAGAGCACTACAACG
TAAAGAGGCCGGACAACACACAGAGATCAACATATCTACGGCGGCTGTCA
CTGCAGGCGCCAGCCCGCTGAACAAGAACTGGACTCTAGCTTCTTTAAAG
TGCACGAAGCCGGGCATGCGCGGTGGACCAAATGTGGTCGACCTATCTAA
GATCATCCTCGCAGACGGGTCGTGTTTCGCGAACCTCTCCCTCCTGCAGG
CGACGGAGCGCCTAGCTCCCCTGGTGGGGAGCTGGGGTAACCAGACCGAG
ATGTCGGCTTTCGCGGCGATGGCAGCAGCGGTCACCGCAAGCGACGCCAC
CATCGGCACCGCCGCGTTCAAGAAGGCGGCGGGACCGCGGGCCATGCTTC
TGTGGGGTTTAGAGGCCCTCCGCGACCACCTCCATGAACGTGGGGCCAAA
GTTTTCCTACCGGGCACCAAAGCGCCAGCAGCGGCCACGCCAGCGAGCGC
TGAGCAGCAGTCGCCCCCGGCACCAGCGGCGGCCCCACAGGTCTCTCCGG
AGGCGTCGGCGCAGCAGACGATACCAGCAGCAGCTGCCCCAACACAGGAC
CAGCCGGCAGGGGCGGGGGAACAAGAGACAGCCTCGGAGCGTGGTTCGGT
AGCTGAGGAAGCGGTGGTGGTTACCACCAAGGTAGTGGCCCCCACCCAGG
GGCAGCGGGCGCTGGCGGTGGATGCTGTCCAGCGGGAGGAGAACCGGAAA
CTTGTGGCCTTGGTTCAGTCGTAGGATGTTTCTCGCGAGGTGAATTCACG
TACCTGGTCGTTTTTCCGTTTCGCCTTGTTTCTATACTTCACACCTTTCG
TCGTTCACCACGCTCTCTTTCGACCTCTGTTCTCTGACACATATGATACT
TTTCCAACGTTTGATAAATTACAGCAGTAGCGGAAATTTAACGCATATGA
TAAACTGCTGCTGTGCGTCACACAGATCCCCACCCACAATCCTCGGGCCT
TGTATGTATACTTCGAAGTATATCGCCAATATAAACAGCAGTCGCGTTAC
ATGGTTACATTCCTGTCGCCCTCGAAGACGGGAAAGGACGCAGTACACTA
GTAGTGATGGAAGCTTACCTGCGATCAAGCGTATGGCGACGATCACATTA
CTGCTGTACAATTCGTGCAGCGACGCAGTAGCTCACACGGCGGTACACCG
GGTTCACATCACTCGTGTCTACATCACTGCGGTTTATATTGTGCAACGAC
TTTAGCACATACGGCGGTATATCGAATGCACGACACCCGTTACTACGTAA
CGTCGCGGCAACATACATTGTTGGCTGAATACATCATACATCATACATGA
GTGTGGGCCGGAGTATACGGTTGTAATTCTGGAAAGGAAATATGCTGCGG
TGTACCGCAAGAGCAGAGGCTGATATACATGTACTGCGGTAAAAGTATCG
ATGCCGACTAACACGGCGGCCACGACTGCGACCTATAATACTTACTTCGT
ATCTGATTGCAGTAGTACAAGTATGGATGCACAGGTCTACTGAAAAGACG
CTGAGATATACCGGAGAACAGCGGCTGATATATATGTACTGCTGTAAGAG
TATCTGATTGCAGTACGTACAAGTATGGATGTACAGGTCTACTGAAAGAC
GCTGAGATATACCGGAGAATAGCGGCTGACATATATGTACTGCTGTAAAG
GTATCGATGCCGATAAACACTGCGGCCACGACTGCGAATAACACTTGTGT
AATTGCGGTACAAGTATGGATGCCCATGTCTACAGCAGAAACGCCTGAAA
ATATAGGTGCTGACATATACCGATGTCACGGGTAATTCATTAGGGCACAG
GGCGGCTGCGTCATGTAGGGTCGCACCACAGCTGATGAAGGGGTACCACC
CAAAAGGATTACCTACCAAGCGGGCTGGTGTACACGGCTGTAATAAGAGG
TACTACAGAATCTTGGTTTCCCCTGTGTTTCATACTACAGCGCCGTACAG
CAGCGTCCGACAGTATCACCGTACCCATCATGGCACACTGAAGAGTACGA
AGTACGGTTTACTATTACACGAACGTACGACAGAGGCTACGAATGCCCCT
CGGCACGGCGACGATCATGCGGCGACAGCGACTAATTTCGTTAACTCCAG
TCTTTTGCACGATGGTGCGGCGACAATTAAAAAAAAAATTGTTTCATACG
GCGACAATTACAATGCGGTGACGGCGACTATCTTCGGGAAGTCTTGCCTT
TTTCTTTCACGATTGCACGGCGACGATAAAAAATATTTCAATGCGACGAC
GGAGACTATTTTGCGATACCTTGTCCGGTTCACGATGGTACGGCGACGGG
TACCAAAGGTTTTGCACGGCGACGGTTACATTGTGGCGACGGCGACGGGT
TTCGATAAGCCTTGTTCTTTCCACGATTTCACGGCGACGATTACAATGCG
GCGACGGCTCTATTTTTGCGAAGTTTTGCCTTTTTCACGACGGCACGGCG
ACGATTACGATGCGGCGACGGTGACGATTACTATGCGGCGACTATGACTA
TTTTCGCGAGGTTTTGTCTTTTTCACGACGGGTACCAAAGGTTTTGCACG
GCGACGGATACATTGCGGCGACGGCGACGGGTTTCGATAAGCCTTGTTCT
TTCCACGATTTCACGGCGACGACTACAATGCGGCGGCGGCGTCTATTTTC
GCGAAGTTTTGCCTTTTTCACGACGGCACGGCGACGATTACGATGCGCGC
GACGATGACGATGACTATTTTCGCGAAATTCGTCTTTTTCACGATTGCAT
GGCGACGATATGCGGCGACGGCGACTAATTTCGCGAAGTCTGATCTTTTT
CACAATTGCACGGCGGCGATAGAAGGCGGCGACGGCCACTATTTTCGTGA
AGTCTGGGACTTTTCACGATTGCACAGCGACGGTATAATGCGGCGACGGC
GACTACTTTCGCGACGTCTGATCCTTTTCAAGACTGCACGGCGACGATAG
AATGCGGCGACGGCGACTATTTTCGTAAAGTCTGGTCCCTTTTCACGATT
GCACGGCAACGATATACTGCGGCGACGGCGACCATTTTCGTACAAATTTA
CCCTTTTACGACGGCACGACGACGATTACATTGCGCGCGACGACTATTTT
CGTGAAGTCTTGTCCTTTGCTTTTCCTTTTCACGATTGCACGGCGGCGTC
TAATTTATTTAATTTCATTTTATTTTATTTTTATTCATTTGTTTTTGGCA
CGGCGACGATTACAATTCTACGACAGTAACGAGTATACCGACACGACTTA
ACGGCGACGACGACATTTCTCTTCAACGAGAATTTCGATTACATTGGGAG
TCACGACTCCCTTGCGTCCTGTACGACGACGATTACAACACTAACGCAGC
CGTTGGCATGTCCTGTGTTTCCGACCCGCCGTAATAAATTGTAGCTCCGG
CTGAAGCTGGACGGCGTTCTCGACGTCATGCGCGATTCGGACGGGCGGTT
CACGTGGTATTCATTGCGTACCCATCTCGAGGCCGCCATGAGGATGGCCA
TGGACCTTAACCTTCTCGACGCACGGAAGATTCTGACCGACACGATTGCG
CGAGGTAACCGCCTGGTGGCCGCGTGCGGCGACCCCGTCATCGTACTCGG
GGTGTTCTCCAAGATTTTACCGTCTGTGCACGGCGTATCCCAGGAGGTGT
ACGAAGCGGACTGCGCCGACCTGCGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig905:83143..86871+

>mRNA_P-littoralis_Contig905.9.1 ID=mRNA_P-littoralis_Contig905.9.1|Name=mRNA_P-littoralis_Contig905.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig905:83143..86871+ (Pylaiella littoralis U1_48)
ATGCGCGGTGGACCAAATGTGGTCGACCTATCTAAGATCATCCTCGCAGA
CGGGTCGTGTTTCGCGAACCTCTCCCTCCTGCAGGCGACGGAGCGCCTAG
CTCCCCTGGTGGGGAGCTGGGGTAACCAGACCGAGATGTCGGCTTTCGCG
GCGATGGCAGCAGCGGTCACCGCAAGCGACGCCACCATCGGCACCGCCGC
GTTCAAGAAGGCGGCGGGACCGCGGGCCATGCTTCTGTGGGGTTTAGAGG
CCCTCCGCGACCACCTCCATGAACGTGGGGCCAAAGTTTTCCTACCGGGC
ACCAAAGCGCCAGCAGCGGCCACGCCAGCGAGCGCTGAGCAGCAGTCGCC
CCCGGCACCAGCGGCGGCCCCACAGGTCTCTCCGGAGGCGTCGGCGCAGC
AGACGATACCAGCAGCAGCTGCCCCAACACAGGACCAGCCGGCAGGGGCG
GGGGAACAAGAGACAGCCTCGGAGCGTGGTTCGGTAGCTGAGGAAGCGGT
GGTGGTTACCACCAAGGTAGTGGCCCCCACCCAGGGGCAGCGGGCGCTGG
CGGTGGATGCTGTCCAGCGGGAGGAGAACCGGAAACTTGTGGCCTTGGTT
CAGTCGTAG
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