mRNA_P-littoralis_Contig904.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig904.20.1
Unique NamemRNA_P-littoralis_Contig904.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig904.20.1 vs. uniprot
Match: D7G4C6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.250e-34
Identity = 72/145 (49.66%), Postives = 96/145 (66.21%), Query Frame = 1 
Query:  370 AKKRVAGSIGRPPRPSAKPPTKSPRVAKKGPAKKKAALNKPGVDENGNPVDREKKFPRPLVEQEKIALLKSIEAVG-GVEAYASKGCSETSYLWWETNILQGLIAALRDDETYHDDPKVIFGSIKFFSAIYDWVGSQKTQLGRYL 801
            +K R  GS GRPPR            +KKGP+K+KA + +  +D +GN + R+ +FPR L + EK  LL+ I+ +  GVEAY +KG SE SYLWW+ N+L+     L DDE Y +DP+V+FGSI+ FS IYDWVGSQKTQL  Y+
Sbjct:  161 SKTRTGGSSGRPPR----------HPSKKGPSKRKAEMKQTFLDIDGNEIVRKAEFPRELADIEKKVLLQVIDDLPQGVEAYGAKGVSEASYLWWDCNVLEDTAKTLADDENYQNDPQVLFGSIENFSPIYDWVGSQKTQLSTYV 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig904.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4C6_ECTSI5.250e-3449.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig904contigP-littoralis_Contig904:99680..103235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size801
Hectar predicted targeting categoryother localisation
Exons4
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.0493603-CDS-P-littoralis_Contig904:99679..998741680791812.0493603-CDS-P-littoralis_Contig904:99679..99874Pylaiella littoralis U1_48CDSP-littoralis_Contig904 99680..99874 -
1680791812.0656788-CDS-P-littoralis_Contig904:100892..1010181680791812.0656788-CDS-P-littoralis_Contig904:100892..101018Pylaiella littoralis U1_48CDSP-littoralis_Contig904 100893..101018 -
1680791812.0765839-CDS-P-littoralis_Contig904:101250..1013971680791812.0765839-CDS-P-littoralis_Contig904:101250..101397Pylaiella littoralis U1_48CDSP-littoralis_Contig904 101251..101397 -
1680791812.0864441-CDS-P-littoralis_Contig904:102902..1032351680791812.0864441-CDS-P-littoralis_Contig904:102902..103235Pylaiella littoralis U1_48CDSP-littoralis_Contig904 102903..103235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig904.20.1prot_P-littoralis_Contig904.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig904 99680..103235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig904.20.1

>prot_P-littoralis_Contig904.20.1 ID=prot_P-littoralis_Contig904.20.1|Name=mRNA_P-littoralis_Contig904.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=267bp
ADAAAAIVDLQGAGCAGSRGSRASRRVRGVSSLVASNLSQEAPLEGSDGP
AARACTPLRQQRPPSRTASPSLGRWVSKTSGGASGGRREGKKSAADEGEE
EDEAGGSSAAEVKKAHEKALSTKAKKRVAGSIGRPPRPSAKPPTKSPRVA
KKGPAKKKAALNKPGVDENGNPVDREKKFPRPLVEQEKIALLKSIEAVGG
VEAYASKGCSETSYLWWETNILQGLIAALRDDETYHDDPKVIFGSIKFFS
AIYDWVGSQKTQLGRYL
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mRNA from alignment at P-littoralis_Contig904:99680..103235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig904.20.1 ID=mRNA_P-littoralis_Contig904.20.1|Name=mRNA_P-littoralis_Contig904.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3556bp|location=Sequence derived from alignment at P-littoralis_Contig904:99680..103235- (Pylaiella littoralis U1_48)
GCAGATGCAGCTGCGGCTATCGTAGATCTTCAGGGTGCGGGTTGCGCTGG
ATCTCGAGGCTCGAGGGCGAGTCGGCGCGTCCGTGGTGTGTCGTCACTTG
TCGCATCCAACCTTTCCCAAGAGGCGCCACTTGAGGGATCGGACGGCCCA
GCAGCCAGGGCATGCACCCCACTGCGGCAGCAAAGGCCGCCATCTCGCAC
AGCATCGCCATCGCTTGGGAGGTGGGTAAGTAAGACCTCGGGCGGCGCCA
GTGGAGGAAGGCGTGAAGGGAAAAAGTCCGCCGCCGACGAAGGCGAGGAG
GAGGATGAAGCCGGAGGGTCTTCTGCTGCTGAGGTGAGATGATGATGTGG
ATACAAATTCAACAAGGCTTCGAGTGCCATACTGCTGTGAGCGAGAAATA
TGGACGCCCGTGTGCTGTGTCCCGTGTGAATGGGTTGCGAGACATGATTC
ACATAAGATTCTCACAGCTCTGCTGTCCCTTCATAGACGGTCAAGAGGGG
GCGACAGCAGTTCATGTGTCACTTCAAAATAAAGCACTCTTTTATTTTTT
ACTTCAAATTTTGGCGCGCCCATAATTTACTGCTGGACCGAAATTCAAAC
CCTGGACACAGCAGTACAGTACAGCAGTACCAGTACAAACTTGCTGCAGC
TTTCCGGCCTTTCGCGGCATCAGTTCCCCGGTGTCTCTGCAAAACGATAC
GTGTGAACTGCTGTTGTATGTTGTTGGAGCGGCCAATTAAACTGCATTCT
TGTTTTTTTTATACATCGCCTTCTTCAGAGTGCCCACATTTTCAAGGCCA
ACAGCTTCTTGTTTGGTGCTTTGAAAAAACTTTTACGAATTGGAGTCAAT
TGTAGTTGAGTACAGCCCGTATTTGCTAACTTTACTTGCCGGCACGACAG
AAGCAATGGTAATCACAGCAACACTAAGCTGTTGCATGGCATCTCCTTCG
CTTTTGTGGTCAGCCGTGTGCGACACGGGGACTGGTATGTAGGGTCCACA
GGGAGCAGTAGTAGAAAGGACCGGATATTACATGTATGCACGGCGCAGAT
GTGTTTCTACGCAAAACTTATCGTGTCCTCCAAATCACCCCTCTGCCCCA
CCCCTACGAGAGCACGCATTTTTTGCTCGCGACACCCAAAGCCGCACCGA
GTAATGTCGCCAGCGGCTGCATCTTGTTCATTGGTTCTTACGAAGTTTTT
TTGTCATCTCGTGATTTTCGTAGCACGTTTTTATTTTATTTTGATGTGGG
TTAGGTCTACATCAACAAAGCAAACTGCTGTTGGCTACCACCGTGAGCGG
GCGCGCAAAAAAGTGCCAGTTTAGCATTTATCATTCGCCGGCCACGCAAG
ACTTATTTATGGCTCGCATCTCTCGCCATTCGCTCCCCTGTCCACACTCA
TTTCGTCCTTTAACCCCCCTTTCCACACCTTCCCTCCCGCCCGTCTCCGA
TTACAGAAAGACGAAACGATGGCAGTATCCCCTAACCCGCAGCCCCCGGC
AGGTGGATTAGGCAGGCAACGGCAGAGGAAGGTGAAACATAATGTGCAAC
ACGATCGAACTACAATTGCTGTGTGACGATGGCATTAGAAGGGGTGGTAA
CGAAAGTCGCTGAGCATATTGACAAAAGTTTGGATCAGGAGAGGTGTGTC
CCGCGGTCGTAAATTGTAAAAGAGATGGCCGGGGACCAATCCCTGTTGGT
GATTAAATTGTCGATCATGCTGGGGATGCGTATTCCCCGCTCTGTGTTTA
TTTCGTTCTTCACAGCTCGAGTCTCACTCATATCTTTTTCGCAACTGTGA
TTTTTCTATTTTGATATTTTTGTCGTATGGCCCTGCAGGTTAAAAAAGCG
CACGAAAAAGCTTTGTCGACGAAGGCCAAGAAGCGGGTGGCCGGCAGCAT
TGGGAGACCTCCTCGACCGAGTGCCAAACCACCAACGAAAAGTCCCAGGG
TCGCGAAAAAGGGCCCGGCAAAAAAGAAAGCAGCGGTGAGAGATAATGCT
CACGACACTCCAACGGCTGTCCCCGTATATCTGTGCGTTGAGAGTAGTAT
TACTTTGCTCTGCGATGCGCTGTTGGAAACGTTAATGTAGATGATCAGCA
TGATTTGGGTTTGTGCAGGCAAGTCTACAACTTCTGAAAGCACTTGAACG
GATAAGACTGGTTGTCGCTAAACTTGGCCGTCCTTCCAATTGCGTTGCCC
TCGTGTTCCCCCCGCAGTTAAACAAACCAGGCGTAGACGAGAATGGTAAC
CCGGTCGACAGGGAAAAGAAGTTCCCGAGACCCCTAGTGGAACAGGAGAA
GATTGCTCTTCTCAAGTCCATCGAAGCCGTGGGCGGCGTAGAGGTGAGTC
ATTGTCATGAATTTCAAGATTGTGTAGTATTGTGAGTTCTGAACGCGGCA
CAAAGTACCGCAAACCCCTCTGTTTTCTCCCCGACTGGAGCCCAGAAAAA
GAAACGACTGCACGCACAAGCACATGCGTTTCAGCGGTAAACAACAACAC
ACCACCAAACAACGCGAACAAGTACCCCAAACATCGGCGGTAGGTGGTGA
GCAATGCATGCCACTCCATCATCATACCAAATGCTCTCGTACAAGGAGGG
CCGAATGAATGAAAGCGGCTTGTTCGGTCTCAAGAGTCTGCGCTTTTCCC
TCCCGCAGTGATGTCGAAAGAGAAAGAAAAATCTCGTACGTTAAAAAAAT
CAGGATGGTACTCATCGAAACTAATACCCCTGCGGGAAATCGTGTCCAGG
GGGGGGGCGTTTTTTTTTGTTTTTATATCTAGTTCCCCCTGGGCAAAACC
AAGGTTTGATGCTTTTCTGCGGAATAATAGGGGAGGGGGAGCAAAGGGGG
GGGGGCGGAGGGGGGGGGGCAGTAGGTTAGTAGTGCTGTTGTGTGTCTGC
GCCGTTGAAATAATATGACGCACAACCAGTCGGACGCGCGCGCGTGAGTG
TGGAGGGCCCACGCTGCGTCCCTATCTCTGTTTGAAATTTAGATGCAGCA
GCGAGGCAGACCATAACTAGTTCACACACAGTCAATCAACCTCACGATAC
CATAACGAAACTGCGTTCAGATCGCCGACCCACAAACCCAGATCAAAAGA
AAAAGTGGTGTCCGCAATACGTCCCCGTTCGGTCTTAGGGCTGTCAAAAG
TTGATGTATCGCATGCTTGTTTGGCAGTGTTATGCAGCCCGCCAAACTGG
ATAAAGGACCCATAGATCACCGGGGAATTAGAAGAAAACTGATGAGAGCC
CATATCTACGCTGATATAAAGGTAGTGAGGTGTGTTTCGCATCGACCCGA
TATTAACCACTGTCGATCTCATCGACGAATGCTGCCGTCAATCTTTTCTT
CCGTTCCGCAGGCGTACGCCTCGAAGGGCTGCAGCGAGACGTCTTATCTC
TGGTGGGAGACGAACATCCTGCAGGGGTTGATCGCCGCTCTGCGTGACGA
CGAGACCTACCATGACGACCCGAAGGTTATTTTCGGGTCGATTAAGTTCT
TCTCAGCCATATACGACTGGGTTGGGTCGCAGAAGACCCAACTCGGCCGA
TACCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig904:99680..103235-

>mRNA_P-littoralis_Contig904.20.1 ID=mRNA_P-littoralis_Contig904.20.1|Name=mRNA_P-littoralis_Contig904.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=801bp|location=Sequence derived from alignment at P-littoralis_Contig904:99680..103235- (Pylaiella littoralis U1_48)
GCAGATGCAGCTGCGGCTATCGTAGATCTTCAGGGTGCGGGTTGCGCTGG
ATCTCGAGGCTCGAGGGCGAGTCGGCGCGTCCGTGGTGTGTCGTCACTTG
TCGCATCCAACCTTTCCCAAGAGGCGCCACTTGAGGGATCGGACGGCCCA
GCAGCCAGGGCATGCACCCCACTGCGGCAGCAAAGGCCGCCATCTCGCAC
AGCATCGCCATCGCTTGGGAGGTGGGTAAGTAAGACCTCGGGCGGCGCCA
GTGGAGGAAGGCGTGAAGGGAAAAAGTCCGCCGCCGACGAAGGCGAGGAG
GAGGATGAAGCCGGAGGGTCTTCTGCTGCTGAGGTTAAAAAAGCGCACGA
AAAAGCTTTGTCGACGAAGGCCAAGAAGCGGGTGGCCGGCAGCATTGGGA
GACCTCCTCGACCGAGTGCCAAACCACCAACGAAAAGTCCCAGGGTCGCG
AAAAAGGGCCCGGCAAAAAAGAAAGCAGCGTTAAACAAACCAGGCGTAGA
CGAGAATGGTAACCCGGTCGACAGGGAAAAGAAGTTCCCGAGACCCCTAG
TGGAACAGGAGAAGATTGCTCTTCTCAAGTCCATCGAAGCCGTGGGCGGC
GTAGAGGCGTACGCCTCGAAGGGCTGCAGCGAGACGTCTTATCTCTGGTG
GGAGACGAACATCCTGCAGGGGTTGATCGCCGCTCTGCGTGACGACGAGA
CCTACCATGACGACCCGAAGGTTATTTTCGGGTCGATTAAGTTCTTCTCA
GCCATATACGACTGGGTTGGGTCGCAGAAGACCCAACTCGGCCGATACCT
T
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