mRNA_P-littoralis_Contig904.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig904.16.1
Unique NamemRNA_P-littoralis_Contig904.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig904.16.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 9.230e-121
Identity = 235/287 (81.88%), Postives = 251/287 (87.46%), Query Frame = 1 
Query:    1 DNRLEAMDVDDVGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPVRKVAYKQRPKLYSSTKITARLVEPWQDGSRERMDSKKESGSEKAQERGGTSSRAANEPSGNTSIPVMVKLLGDGLCADQGEGNIEISDGVYYKRAELRNFQYYYDKSYVFDPKNIGVALGETGVKIDGRIHVVKSVDHGK*TLEGRESTITRWELLENRCDERLSLDTDLRRFILHVVTKYSVMMGSGVPALSGVLTGMLRNPNDAIARAKRSGDDTDPESNMKTSELMSI 861
            DNRLEAMDVD VGGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        GPVRKVAYKQRPKLY+STKI ARLVEPWQDGSRE M+ K+ESG EKAQER GT SRAANEP GNTSIPVMVKLLGDGLC DQG+G+IEISDGVYYKRAELRN QYYYDKSYV DP+NI V  G+T VKIDG +HVVKSVDHGK TLEGRESTIT+WELLE RCDE ++L TDLRRFILH+VTKY+VMMGS VPAL+GVLT ML NPNDA+A   + GDDTDPESNMKTSELMSI
Sbjct:  125 DNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNG--GGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAVAN--KCGDDTDPESNMKTSELMSI 407
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BLAST of mRNA_P-littoralis_Contig904.16.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.710e-78
Identity = 129/152 (84.87%), Postives = 136/152 (89.47%), Query Frame = 1 
Query:  406 GEGNIEISDGVYYKRAELRNFQYYYDKSYVFDPKNIGVALGETGVKIDGRIHVVKSVDHGK*TLEGRESTITRWELLENRCDERLSLDTDLRRFILHVVTKYSVMMGSGVPALSGVLTGMLRNPNDAIARAKRSGDDTDPESNMKTSELMSI 861
            GEG+IEISDGVYYKRAELR  QYYYDKSY FDPKNIGV L ETGVKID RIH VKSVDHGK TLEGRES IT+WELLENRCDER++LDTDLRRFILH+VTKY+VMMGS VPALSGV+TGML NPNDAI RA RSGDDTDPE  MK SELMSI
Sbjct:  102 GEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSI 253
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BLAST of mRNA_P-littoralis_Contig904.16.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 4.450e-39
Identity = 67/98 (68.37%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:  406 GEGNIEISDGVYYKRAELRNFQYYYDKSYVFDPKNIGVALGETGVKIDGRIHVVKSVDHGK*TLEGRESTITRWELLENRCDERLSLDTDLRRFILHV 699
            GE +IEI +GVY+KR E+R+ +YYYDKSY+FDPK+IGV  GET V+IDG +HVVKSVD GK  LEG +STIT+WELL NRC E ++LDTDLRRFI H+
Sbjct:  102 GEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
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BLAST of mRNA_P-littoralis_Contig904.16.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.380e-30
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:  388 GLCADQGEGNIEISDGVYYKRAELRNFQYYYDKSYVFDPKNIGVALGETGVKIDGRIHVVKSVDHGK*TLEGRESTITRWELLENRCDERLSLDTDLRRFILHVVTKYSVMMGSGVPALS--GVLT-GMLRNPNDAIARAKRSGDDTDPESNMKTSE 849
            GLC      +++++D V +KR+EL   +YY+DK+Y+F+P +I V +G T VKIDGRI VV+S DHGK  L G +  IT+WELL+NR  E  +LD +LRRFI+     Y VMM   VP     G+ T GML N  +A+ RA+   D+ D ESN  T E
Sbjct:  190 GLCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLE 345
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig904.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE9.230e-12181.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI4.710e-7884.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQV3_ECTSI4.450e-3968.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6S7_9PHAE4.380e-3047.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig904contigP-littoralis_Contig904:32575..33435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHJ0
Model size861
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.63e-09
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791811.9914775-UTR-P-littoralis_Contig904:32574..328441680791811.9914775-UTR-P-littoralis_Contig904:32574..32844Pylaiella littoralis U1_48UTRP-littoralis_Contig904 32575..32844 -
1680791812.0149627-UTR-P-littoralis_Contig904:33417..334351680791812.0149627-UTR-P-littoralis_Contig904:33417..33435Pylaiella littoralis U1_48UTRP-littoralis_Contig904 33418..33435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791812.0044525-CDS-P-littoralis_Contig904:32844..334171680791812.0044525-CDS-P-littoralis_Contig904:32844..33417Pylaiella littoralis U1_48CDSP-littoralis_Contig904 32845..33417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig904.16.1prot_P-littoralis_Contig904.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig904 32845..33417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig904.16.1

>prot_P-littoralis_Contig904.16.1 ID=prot_P-littoralis_Contig904.16.1|Name=mRNA_P-littoralis_Contig904.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=191bp
MDVDDVGGDVGGDFGGDIGGNIGGDGSDDDGGRGGGSGSGRGRGGGSGPV
RKVAYKQRPKLYSSTKITARLVEPWQDGSRERMDSKKESGSEKAQERGGT
SSRAANEPSGNTSIPVMVKLLGDGLCADQGEGNIEISDGVYYKRAELRNF
QYYYDKSYVFDPKNIGVALGETGVKIDGRIHVVKSVDHGK*
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mRNA from alignment at P-littoralis_Contig904:32575..33435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig904.16.1 ID=mRNA_P-littoralis_Contig904.16.1|Name=mRNA_P-littoralis_Contig904.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig904:32575..33435- (Pylaiella littoralis U1_48)
GACAATCGTCTCGAGGCTATGGACGTTGACGACGTTGGTGGCGACGTTGG
TGGCGACTTCGGTGGCGACATTGGTGGCAACATTGGTGGAGATGGCAGCG
ATGACGACGGTGGCAGGGGTGGCGGCAGTGGCAGCGGCAGGGGGAGAGGG
GGAGGGAGCGGCCCCGTGCGAAAGGTCGCGTACAAACAACGACCAAAGTT
ATACTCTTCCACCAAAATAACCGCACGCCTGGTTGAGCCGTGGCAGGACG
GAAGTCGCGAGCGGATGGACAGCAAAAAAGAGTCGGGTAGTGAAAAGGCT
CAGGAGAGGGGTGGTACGTCCTCCCGCGCAGCAAATGAACCCAGCGGAAA
CACTTCGATACCGGTCATGGTCAAACTCCTGGGTGATGGCCTTTGTGCTG
ACCAGGGAGAGGGTAATATCGAGATCTCAGACGGGGTGTACTACAAGCGT
GCTGAGTTGAGGAATTTTCAGTATTACTACGACAAGTCCTACGTGTTCGA
CCCGAAGAATATCGGTGTGGCTCTCGGTGAGACGGGCGTCAAGATCGATG
GCCGAATCCACGTGGTGAAATCTGTCGATCACGGCAAATAAACGCTGGAA
GGCCGGGAATCCACAATCACCCGGTGGGAGCTGCTGGAAAACCGGTGCGA
TGAGAGGCTGTCACTGGACACCGACCTCCGGCGGTTCATCCTCCATGTGG
TGACAAAGTACTCGGTCATGATGGGTTCGGGTGTACCGGCTCTCAGCGGC
GTGTTGACTGGGATGCTCCGGAACCCGAATGATGCCATAGCCAGAGCCAA
AAGGAGTGGTGATGACACAGATCCGGAGAGCAACATGAAGACCAGCGAGC
TAATGTCGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig904:32575..33435-

>mRNA_P-littoralis_Contig904.16.1 ID=mRNA_P-littoralis_Contig904.16.1|Name=mRNA_P-littoralis_Contig904.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=573bp|location=Sequence derived from alignment at P-littoralis_Contig904:32575..33435- (Pylaiella littoralis U1_48)
ATGGACGTTGACGACGTTGGTGGCGACGTTGGTGGCGACTTCGGTGGCGA
CATTGGTGGCAACATTGGTGGAGATGGCAGCGATGACGACGGTGGCAGGG
GTGGCGGCAGTGGCAGCGGCAGGGGGAGAGGGGGAGGGAGCGGCCCCGTG
CGAAAGGTCGCGTACAAACAACGACCAAAGTTATACTCTTCCACCAAAAT
AACCGCACGCCTGGTTGAGCCGTGGCAGGACGGAAGTCGCGAGCGGATGG
ACAGCAAAAAAGAGTCGGGTAGTGAAAAGGCTCAGGAGAGGGGTGGTACG
TCCTCCCGCGCAGCAAATGAACCCAGCGGAAACACTTCGATACCGGTCAT
GGTCAAACTCCTGGGTGATGGCCTTTGTGCTGACCAGGGAGAGGGTAATA
TCGAGATCTCAGACGGGGTGTACTACAAGCGTGCTGAGTTGAGGAATTTT
CAGTATTACTACGACAAGTCCTACGTGTTCGACCCGAAGAATATCGGTGT
GGCTCTCGGTGAGACGGGCGTCAAGATCGATGGCCGAATCCACGTGGTGA
AATCTGTCGATCACGGCAAATAA
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