mRNA_P-littoralis_Contig903.1.6 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig903.1.6 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 9.650e-133 Identity = 389/954 (40.78%), Postives = 484/954 (50.73%), Query Frame = 1
Query: 115 LCESWDSNWMGGSSCAGFDDDDLDNDNLGNADAFEAGLEPLPTWDGAAYSSPTSSNKNGGGSTRRHAAPERHRRQHKWAKGDNSLFPVGDEDKALYS-LNLAALSLGPDEIDGYTGADSPVLRASKLAGNSNVM---------VERPVQLRSRPS----QAEETLTHVIRLHRTGSVVVECKGGLRPPGDVAARQEAGPVEAGKEEAGHGYYAEEERFWKERCPNLARTDVLSTGALEGTRANASVVVVPRANSPAGIQAAAAAAAAVSPAGRANYDYSTAEAAYRSSSPRHRKSRDHPDRPRTLSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRVVCGSEA---WKQGDTAARRQRFRSLRDAETVLHGVLESVKGGLAKEDDYRGVATMAEDSSALRSTLQEKRVSALRQRVAEVFRGQTTLPAGNHDDVGDRGSLGRISPNRTKRVHGRHHHPVGNSSGGGTHDHGRGIDG-HAPSPPSASSSPGREQPXXLGARDR-SCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVGRVAEMSRRIALRCLDMEQECLRRERSQTRLFQEQLRGVRQAAQELTLRTIRDEKARTSDLLKETQKRFEEREKEAAVKFEQAEENWRAEKGALSASLADAKSESERTRRLAREAGESGRKDAEAALERQSQELQRRFAEQKGGLRRAAEETLRRVVDGKARDDEEAALQAQTIQESLSAQVRSWKAKAESAERRAAEERDKRRGLEAGAKGALAQASGEVEKTRQVQEGALRELRTKSEADRAAHMEEVERLKEEHRANLLRVHQDKKKTSEAARQQWLGEIQEVRSEAAAKAEEAATRAVAERAEALRRLRLAHDVEMRKAGRDILRLERESRRYXXXXXXXXXXXPSGVLARSKLDSSPLSPLPVGSYSPKPL 2919
CESWDSNWM GS C GF ++ D+D G ADAFEA L+PLP WDG AYS+ + +N R + +R ++ P + + L+L A+++GPDE T S LR +KLAG+ + M R +P + + LTHVIRLHRTGSVVVE KG G + +AG + A YAEEERFW+ RCP A V+ ++ T AS V +AN A ANYDY AEAA+ + SP + R C + A ++ A+R+R +SLRDAE+VL GVLESV+ + + R A EDS + T Q +R S LRQ VA +FR + G GS+G SP++ + RH+ DG + PSP R GA R + XXXXXX XXX ES GRVAE+SRRIA+RC SQTRLFQEQLR VR AQ++ RTI DE+ R LL ETQ+RFEE+E+ K AEE+W+ E+ +L+A+ A AKSE E+ RR AR A E+G + ALE+Q +LQR +AE+KGGLRRAAE+ LRR ++G AR EEAA +AQ Q+SL AQVRSWKAK E+AERRAAEER+KR+GLEAG KGALAQ E ERL+EEHRA LLRVHQDKK EAAR++W E+QE+R EA AKAE+AATRA AER+EALRRLRLAHD EMRKAGRDILRLERE+RR PSG+ RSK D+S LSPLP GSYS +PL
Sbjct: 4 FCESWDSNWMDGS-CGGFQNNADDSD--GGADAFEAALQPLPAWDGLAYSTNRGNAENDIVWGTRQSDRDR-----------SAASPSPEHHPGMLDDLDLGAVNVGPDEAGDCTDNVSSTLRTTKLAGDPDGMHPPIGQAWSETRSTSPEPKPKGHDLETGDNLTHVIRLHRTGSVVVERKGKPNARGGIIG--DAGAFGPRQHAAEQYSYAEEERFWQARCPPEADNAVV----VQRTAPTASPRVT-KANGRA-----------------ANYDYFAAEAAHLAGSPAGKS------------------------VPPGGNSSLRGRGPGQPTGRRTTTRFEEKADACVQENCATQGTHVPPPRRTARKGCSARAKAITERKRDKAQRRRLQSLRDAESVLRGVLESVEDAPSTGEVCRKTAA-EEDSYSTMDTPQGERFSVLRQNVANLFRDEAHEERGESSTGKHGGSMGGTSPSKYRAQTSRHY------------------DGDNWPSPLGIRRVGNRSGSRERGAMARGTSQQVDQHEQRQCIEDERAEGLAHSEEXXXXXXGXXXQESAGRVAELSRRIAMRCXXXXXXXXXXXXSQTRLFQEQLRSVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKERGLVAKLNLAEESWKVERESLNANTAAAKSEVEKCRRQARAAAEAGMNASREALEKQRLDLQRGWAEEKGGLRRAAEDALRRAMEGNARAREEAAKKAQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQ---EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARR------CQQQQEPSGMAPRSKQDNSTLSPLPRGSYSLRPL 867
BLAST of mRNA_P-littoralis_Contig903.1.6 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI) HSP 1 Score: 348 bits (893), Expect = 2.550e-105 Identity = 230/379 (60.69%), Postives = 267/379 (70.45%), Query Frame = 1
Query: 1783 ESVGRVAEMSRRIALRCLDMEQECLRRERSQTRLFQEQLRGVRQAAQELTLRTIRDEKARTSDLLKETQKRFEEREKEAAVKFEQAEENWRAEKGALSASLADAKSESERTRRLAREAGESGRKDAEAALERQSQELQRRFAEQKGGLRRAAEETLRRVVDGKARDDEEAALQAQTIQESLSAQVRSWKAKAESAERRAAEERDKRRGLEAGAKGALAQASGEVEKTRQVQEGALRELRTKSEADRAAHMEEVERLKEEHRANLLRVHQDKKKTSEAARQQWLGEIQEVRSEAAAKAEEAATRAVAERAEALRRLRLAHDVEMRKAGRDILRLERESRRYXXXXXXXXXXXPSGVLARSKLDSSPLSPLPVGSYSPKPL 2919
ES GRVAE+SRRI RSQTRLFQEQLRGVR AQ++ RTI DE+ R LL ETQ+RFEE+EK K E AEE+W+AE+ +LSA A AK E E+ RR AR A E+ R + ALE+Q + QR +AE+KGGLRRAAE+ LRR ++G R+ EEAA +AQT Q+SL AQ+RSWKAKAE+AERRA EER+KRRGLEAG KG LAQ EVEK DRA H EE+ERL+EEHRA LLRVHQDKK EAAR+QW E+QE+R EA AKAE+AATRA AER+EALRRLRLAHD EMRKAGRDILRLERE+RR PSG+ RSK D+S LSPLP GSYSP+PL
Sbjct: 136 ESAGRVAELSRRIXXXXXXXXXXXXXXXRSQTRLFQEQLRGVRLGAQQVARRTIHDERIRQKQLLLETQQRFEEKEKGLVAKLELAEESWKAERESLSADTAAAKCEVEKCRRQARAAAEAARNTTKEALEKQRLDFQRGWAEEKGGLRRAAEDALRRAMEGNVREREEAATKAQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQ---EVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARR------SQQQQEPSGMAPRSKEDNSTLSPLPRGSYSPRPL 505 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig903.1.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig903.1.6 >prot_P-littoralis_Contig903.1.6 ID=prot_P-littoralis_Contig903.1.6|Name=mRNA_P-littoralis_Contig903.1.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=973bp ESESEEEEWFRCIVRSRRDGALDDEKRTNRQREEREMALCESWDSNWMGGback to top mRNA from alignment at P-littoralis_Contig903:114..15862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig903.1.6 ID=mRNA_P-littoralis_Contig903.1.6|Name=mRNA_P-littoralis_Contig903.1.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=15749bp|location=Sequence derived from alignment at P-littoralis_Contig903:114..15862- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig903:114..15862- >mRNA_P-littoralis_Contig903.1.6 ID=mRNA_P-littoralis_Contig903.1.6|Name=mRNA_P-littoralis_Contig903.1.6|organism=Pylaiella littoralis U1_48|type=CDS|length=2919bp|location=Sequence derived from alignment at P-littoralis_Contig903:114..15862- (Pylaiella littoralis U1_48)back to top |