mRNA_P-littoralis_Contig902.5.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE) HSP 1 Score: 243 bits (621), Expect = 5.860e-72 Identity = 123/142 (86.62%), Postives = 130/142 (91.55%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D+VV IVL ASCFFSVA NE+S SVDAG+LGAALVYVLQLG LFQWSVRQSAEVENQMVSAERVLGYCRVPQEA+L SE G KP D WPAKG+IE+RDM MRYREDLPPVLK LTLSIKGGSRVGVVGRTGAGKS
Sbjct: 1098 RWLGFRMDMVVIIVLAASCFFSVAANEYSDSVDAGLLGAALVYVLQLGGLFQWSVRQSAEVENQMVSAERVLGYCRVPQEASLESEPGCKPADGWPAKGDIEVRDMSMRYREDLPPVLKGLTLSIKGGSRVGVVGRTGAGKS 1239
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI) HSP 1 Score: 242 bits (618), Expect = 1.480e-71 Identity = 121/142 (85.21%), Postives = 131/142 (92.25%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D+VV IVLTASCFFSVAVNE+SSSVDAG+LGAALVYVLQLG LFQW+VRQ+AEVENQMVS ERVL YCRVPQEA+L SE G +P D WPAKGNIE+RD+ MRYREDLPPVLK LTLSIKGGSRVGVVGRTGAGKS
Sbjct: 1078 RWLGFRMDMVVIIVLTASCFFSVAVNEYSSSVDAGLLGAALVYVLQLGGLFQWAVRQAAEVENQMVSVERVLSYCRVPQEASLESEPGYQPSDGWPAKGNIEVRDLSMRYREDLPPVLKGLTLSIKGGSRVGVVGRTGAGKS 1219
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE) HSP 1 Score: 240 bits (613), Expect = 6.650e-71 Identity = 119/142 (83.80%), Postives = 131/142 (92.25%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D+VV IVL ASCFFSVAVNE+S+S+DAG+LGAALVYVLQLG LFQW+VRQ+AEVENQMVSAERVL YCRVPQEA+L S+ G KP D WP+KGNIE+RDM MRYREDLPPVLK LTLSIKGGSRVGVVGRTGAGKS
Sbjct: 997 RWLGFRMDMVVIIVLAASCFFSVAVNEYSNSIDAGLLGAALVYVLQLGGLFQWAVRQAAEVENQMVSAERVLSYCRVPQEASLESDPGYKPADGWPSKGNIEVRDMSMRYREDLPPVLKGLTLSIKGGSRVGVVGRTGAGKS 1138
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI) HSP 1 Score: 239 bits (609), Expect = 2.390e-70 Identity = 120/142 (84.51%), Postives = 130/142 (91.55%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D+VV IVLTASCFFSVAVNE+SSSVDAG+LGAA+VYVLQLG LFQW+VRQ+AEVENQMVSAERVL YCRVPQEA L SE KP D WPA+GNIE+RDM MRYR+DLPPVLK LTLSIKGGSRVGVVGRTGAGKS
Sbjct: 1047 RWLGFRMDMVVIIVLTASCFFSVAVNEYSSSVDAGLLGAAMVYVLQLGGLFQWAVRQAAEVENQMVSAERVLSYCRVPQEAALASEPVYKPADGWPAEGNIEVRDMSMRYRDDLPPVLKGLTLSIKGGSRVGVVGRTGAGKS 1188
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI) HSP 1 Score: 193 bits (490), Expect = 4.320e-58 Identity = 97/110 (88.18%), Postives = 102/110 (92.73%), Query Frame = 1
Query: 97 DAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
DAG+LGAALVYVLQLG LFQWSVRQSAEVENQMVSAERVLGYC+VPQEA+L SE G KP D WPAKG+IE+RDM MRYREDLPPVLK LTLSIKGGSRVGVVGRTGAGKS
Sbjct: 14 DAGLLGAALVYVLQLGGLFQWSVRQSAEVENQMVSAERVLGYCKVPQEASLESEPGCKPADGWPAKGDIEVRDMSMRYREDLPPVLKGLTLSIKGGSRVGVVGRTGAGKS 123
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A7S4DD06_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD06_HETAK) HSP 1 Score: 176 bits (446), Expect = 2.020e-51 Identity = 87/142 (61.27%), Postives = 104/142 (73.24%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGF LD++V +++ ++ F SVA NE S + G+LGAAL YV+ L LFQWSVRQSAEVENQMVS ERVL YCR PQE L S G+ P DWP +G I +++W Y LPPVLK LT +I+GG RVGVVGRTGAGKS
Sbjct: 1 RWLGFWLDMLVVLMIGSAAFVSVAANELYSEIPGGLLGAALTYVVLLAGLFQWSVRQSAEVENQMVSVERVLAYCRAPQEPPLESAPGKAPPADWPQRGEIVAKNVWATYHPQLPPVLKGLTFTIQGGWRVGVVGRTGAGKS 142
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A7S3Y5Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z6_HETAK) HSP 1 Score: 176 bits (446), Expect = 3.030e-51 Identity = 87/142 (61.27%), Postives = 104/142 (73.24%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGF LD++V +++ ++ F SVA NE S + G+LGAAL YV+ L LFQWSVRQSAEVENQMVS ERVL YCR PQE L S G+ P DWP +G I +++W Y LPPVLK LT +I+GG RVGVVGRTGAGKS
Sbjct: 1 RWLGFWLDMLVVLMIGSAAFVSVAANELYSEIPGGLLGAALTYVVLLAGLFQWSVRQSAEVENQMVSVERVLAYCRAPQEPPLESAPGKAPPADWPQRGEIVAKNVWATYHPQLPPVLKGLTFTIQGGWRVGVVGRTGAGKS 142
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A7R9ZKD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKD5_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.570e-39 Identity = 68/143 (47.55%), Postives = 100/143 (69.93%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFS-SSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D +V I+L S F +V ++F +D ++G AL ++ L LFQW+VRQSAE+ NQM+S ERV GY ++P EA + +E K DWP+ G ++ +++ +RYR+DLPP L++++ I GG R+G VGRTG+GKS
Sbjct: 14 RWLGFRMDGLVVILLIVSSFLAVVFHDFGWFEIDPALVGLALSLLIMLAGLFQWTVRQSAEIVNQMISVERVAGYTQLPSEAPVETEAD-KLHPDWPSSGGLKCQNLKVRYRDDLPPALQNISFDISGGERIGCVGRTGSGKS 155
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A7S1VW75_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VW75_9STRA) HSP 1 Score: 147 bits (370), Expect = 3.680e-38 Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFS-SSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLKSLTLSIKGGSRVGVVGRTGAGKS 426
RWLGFR+D ++ I LT + F +V V++ + +D G+LG A+ ++QL LFQW +RQSAEV NQMV+ ERV+G+ +P EA LVS+ G D+WP+KG I+++D+ +RYRE LP L+ +T I GGSR+GVVGRTG GKS
Sbjct: 1048 RWLGFRMDALMFIFLTIASFAAVVVHQENWFKIDPGILGLAVSLLIQLSGLFQWCIRQSAEVVNQMVAVERVIGFRDLPSEAALVSD-GDDTVDNWPSKGEIDVKDLCVRYREGLPLSLRGITFKIDGGSRIGVVGRTGGGKS 1189
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA) HSP 1 Score: 144 bits (364), Expect = 2.390e-37 Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1
Query: 1 RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLFQWSVRQSAEVENQMVSAERVLGYCRVPQEANLVSETGRKPEDDWPAKGNIEIRDMWMRYREDLPPVLK 357
RWLG LD+VV ++L A+ FFSVAV+EF S ++ G LGAAL YV+QLG LFQW+VRQSAEVENQ++S ER+L YC V QEA S G+ P +WPA G +++ ++W Y+ P VLK
Sbjct: 1367 RWLGLWLDMVVLVLLAATAFFSVAVDEFGSGINPGYLGAALAYVIQLGGLFQWAVRQSAEVENQIISVERILQYCEVEQEAPWFSPEGQGPPPEWPAHGELDVHNLWASYKPSQPAVLK 1485 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig902.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig902.5.1 >prot_P-littoralis_Contig902.5.1 ID=prot_P-littoralis_Contig902.5.1|Name=mRNA_P-littoralis_Contig902.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp RWLGFRLDVVVAIVLTASCFFSVAVNEFSSSVDAGMLGAALVYVLQLGRLback to top mRNA from alignment at P-littoralis_Contig902:20810..22606- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig902.5.1 ID=mRNA_P-littoralis_Contig902.5.1|Name=mRNA_P-littoralis_Contig902.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1797bp|location=Sequence derived from alignment at P-littoralis_Contig902:20810..22606- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig902:20810..22606- >mRNA_P-littoralis_Contig902.5.1 ID=mRNA_P-littoralis_Contig902.5.1|Name=mRNA_P-littoralis_Contig902.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig902:20810..22606- (Pylaiella littoralis U1_48)back to top |