mRNA_P-littoralis_Contig901.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig901.4.2
Unique NamemRNA_P-littoralis_Contig901.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 3.780e-86
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 2
Query:  359 EGFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGFT STNDKTIICCDEAVDRI TDKQ AEKPFTVHKK GTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM
Sbjct:  248 EGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 381          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 3.180e-76
Identity = 140/258 (54.26%), Postives = 164/258 (63.57%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLA-GRGVH*VHQRQDHHLL**SGGQNLDR--QAVRRKTIH--------SPQKGWYYGNPEGVLPHRRQWLPQVADAH*TLEVPVERG*LAVLEEAGERAQGCGVFFRHPEDALQNPEARHDLPEAGAPRLRLLHMLYPAQHA 741
            VLA LTILGRGN F SIY +SWMS  TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN  RSYTGKEG PT+GYQVTVNHAGR  A   G        D  ++         R  +    KT          +  KG Y     G   H+ Q L     AH   +VP ER    + EEAGERA+G G+  RHPE  LQ+PEARH +P AGA R R+LH+L+ AQHA
Sbjct:  126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGF--TGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGY--HKWQIL---MGAH---QVPAERERSPLFEEAGERAEGRGMLLRHPERPLQDPEARHGVPRAGAHRQRVLHVLHLAQHA 373          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.800e-68
Identity = 106/134 (79.10%), Postives = 115/134 (85.82%), Query Frame = 2
Query:  359 EGFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGFT STNDKTI+C D AVD+I TDKQ  EK F ++ + GTT TLKGCY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHNMLHT DGM
Sbjct:  124 EGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGM 257          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 7.710e-67
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 2
Query:  359 EGFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGFT STNDKT +C D AV++I TDKQ  EK F V+ + GTT TLKGCY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK R RIL LAM +Q QER+D VFFTCCILHNMLHT DGM
Sbjct:   79 EGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGM 212          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 6.510e-63
Identity = 98/134 (73.13%), Postives = 112/134 (83.58%), Query Frame = 2
Query:  359 EGFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGFT STNDKT +C D  V++I TD Q  EK F V+ + GTT TLKGCYL+VDNGYHKW++L+EP+KYPLSE D+LFSKRLESVRKDVECFFGILK  FRI K+AM Y +QER+D VFFTCCILHNMLHT DGM
Sbjct:  219 EGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGM 352          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.220e-62
Identity = 107/162 (66.05%), Postives = 116/162 (71.60%), Query Frame = 2
Query:  359 EGFTRSTNDKTIICCDEAVDRIWTDKQSA----------------------------EKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGFT STNDKTI+C D AV++IWTDK                               EK F V+ + GTT TLKGCYL+VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTC ILHNMLHT DGM
Sbjct:  206 EGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGM 367          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 4.280e-60
Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRV 348
            VLA LTILGRGN F SIY +SWMS  TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN  RSYTGKEG PTVGYQVTVNHAGR 
Sbjct:  126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRA 241          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.460e-54
Identity = 89/132 (67.42%), Postives = 103/132 (78.03%), Query Frame = 2
Query:  362 GFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDG 757
            GFT STNDK+II  D AV +I  D   +EK FTV++  GT   LKGCYL+VDNGYHKW  LI PSKYP+ + DL FSKRLESVRKDVECFFGI+K  FRILKL++ Y KQE +D VFFTCCILHNMLH++D 
Sbjct:   37 GFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 168          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.050e-53
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 2
Query:  359 EGF-TRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 760
            EGF T +    TI+C D AV++I TDKQ  EK F V+ + GTT TLKG YL+VDNGYHKW++LIEPSKYPLSE DLLFSKRL+SVR+D     GILK RFRILKLAM YQ QER+D VFFTCCI+HNMLHT DGM
Sbjct:  254 EGFPTIAYQVVTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGM 388          
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.810e-52
Identity = 90/132 (68.18%), Postives = 104/132 (78.79%), Query Frame = 2
Query:  362 GFTRSTNDKTIICCDEAVDRIWTDKQSAEKPFTVHKKGGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDG 757
            GFT STNDK+II  D AV +I  D   +EK FTV++  GT   LKGCYL+VDNGYHKW  LI PSKYP+ + DL FSKRLESVRKDVECFFGI+K RFRILKL++ Y KQE +D VFFTCCILHNMLH++D 
Sbjct:  278 GFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig901.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE3.780e-8697.01Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI3.180e-7654.26Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JUX7_9PHAE1.800e-6879.10DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI7.710e-6776.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHI0_9PHAE6.510e-6373.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE2.220e-6266.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L642_9PHAE4.280e-6078.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE4.460e-5467.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0X4_9PHAE4.050e-5369.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.810e-5268.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig901contigP-littoralis_Contig901:9396..10356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size760
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.45e-36
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size306
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.622873-UTR-P-littoralis_Contig901:9395..96231680791809.622873-UTR-P-littoralis_Contig901:9395..9623Pylaiella littoralis U1_48UTRP-littoralis_Contig901 9396..9623 -
1680791809.6359272-UTR-P-littoralis_Contig901:9824..99841680791809.6359272-UTR-P-littoralis_Contig901:9824..9984Pylaiella littoralis U1_48UTRP-littoralis_Contig901 9825..9984 -
1680791809.657959-UTR-P-littoralis_Contig901:10290..103561680791809.657959-UTR-P-littoralis_Contig901:10290..10356Pylaiella littoralis U1_48UTRP-littoralis_Contig901 10291..10356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.6476965-CDS-P-littoralis_Contig901:9984..102901680791809.6476965-CDS-P-littoralis_Contig901:9984..10290Pylaiella littoralis U1_48CDSP-littoralis_Contig901 9985..10290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig901.4.2prot_P-littoralis_Contig901.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig901 9985..10290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig901.4.2

>prot_P-littoralis_Contig901.4.2 ID=prot_P-littoralis_Contig901.4.2|Name=mRNA_P-littoralis_Contig901.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPG
AMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAGRGV
H*
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mRNA from alignment at P-littoralis_Contig901:9396..10356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig901.4.2 ID=mRNA_P-littoralis_Contig901.4.2|Name=mRNA_P-littoralis_Contig901.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=961bp|location=Sequence derived from alignment at P-littoralis_Contig901:9396..10356- (Pylaiella littoralis U1_48)
GTGCTGGCGTGTCTGACTATACTGGGCAGGGGGAATGTATTCGGAAGCAT CTACAACCTTTCGTGGATGAGCACCCCGACAGTGCAGAAGGTGTTCCACC AGTTCTGCGAGCACTTTGCAACCGAGATGTACGACGAGCACATCTTCCTT CCCAGCGAGGAGAACGGCGAGCTGGATCGCGTCATGGGACAGTACGAGAA GCTGGGGTTCCCGGGCGCAATGGGTTCAACGGACGTCACCCATATCGGGT GGAGTAGGTGCCCGTACAACCAAGGACGTTCTTACACCGGTAAGGAAGGC AAGCCTACGGTCGGATACCAGGTGACGGTCAACCACGCTGGGCGTGTGCT GGCCGGGCGAGGGGTTCACTAGGTCCACCAACGACAAGACCATCATCTGC TGTGATGAAGCGGTGGACAGAATTTGGACCGACAAGCAGTCCGCCGAAAA ACCATTCACAGTCCACAAAAAGGGTGGTACTACGGAAACCCTGAAGGGGT GCTACCTCATCGTCGACAATGGTTACCACAAGGTGAAAAAATGTAAAGTA CCACACGAAATGTCGGGGGGGTTTTTCACGAGCACGCCTTGTTTGTCGGC CAACCTACACTATCATCCCGGTTGGTCGAGCTCCATGCCGTGGGTTTGAC GTGCGACAATGAACGCGGTATGACACACAGAAGGTTAATATTTCCCCTTC TCTCCTTTGGTTTGTTTCGGTCCTTTCATGCAGTGGCGGATGCTCATTGA ACCCTCGAAGTACCCGTTGAGCGAGGCTGACTTGCTGTTCTCGAAGAGGC TGGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTTCGGCATCCTGAAGATG CGCTTCAGAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGGAGCGCCT CGACTACGTCTTCTTCACATGCTGTATCCTGCACAACATGCTCCATACGC ATGACGGCATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig901:9396..10356-

>mRNA_P-littoralis_Contig901.4.2 ID=mRNA_P-littoralis_Contig901.4.2|Name=mRNA_P-littoralis_Contig901.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig901:9396..10356- (Pylaiella littoralis U1_48)
ATGAGCACCCCGACAGTGCAGAAGGTGTTCCACCAGTTCTGCGAGCACTT
TGCAACCGAGATGTACGACGAGCACATCTTCCTTCCCAGCGAGGAGAACG
GCGAGCTGGATCGCGTCATGGGACAGTACGAGAAGCTGGGGTTCCCGGGC
GCAATGGGTTCAACGGACGTCACCCATATCGGGTGGAGTAGGTGCCCGTA
CAACCAAGGACGTTCTTACACCGGTAAGGAAGGCAAGCCTACGGTCGGAT
ACCAGGTGACGGTCAACCACGCTGGGCGTGTGCTGGCCGGGCGAGGGGTT
CACTAG
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