mRNA_P-littoralis_Contig901.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig901.1.1
Unique Name	mRNA_P-littoralis_Contig901.1.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.220e-34
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 1

Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PLVYNDYVKTSINLALENKKLFT+KQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV
Sbjct:   11 LPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 79

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JZ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ15_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.820e-15
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AA+AQGY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAASAQGYKDIAV 80

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BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-14
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AAA QGY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAV 80

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.550e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1

Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.820e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1

Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.490e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1

Query:  103 VPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            +PL +N YV+ ++ L L  K L  +K  +  +QNVCIVY+CLAVKRNAG+V TEAK  AAA+GY++IAV
Sbjct:   12 LPLEFNGYVEGTLELLLGGKGLSQIKL-LKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAV 79

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5K889_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K889_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.430e-14
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++ L +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK AAA QGY++IAV
Sbjct:   11 SLSLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAVQGYKDIAV 80

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  +     T  + +  +QNVCIVY+CLAVKRNAG+V T+AK A AAQGY++IAV
Sbjct:   11 SLPLKFNSYAETVISMLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAV 80

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.850e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQML-FIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  + +       ++L  +QNVCIVY+CLAVKRNAG+V T+AK AA A+GY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAV 81

[Close]

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-12
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1

Query:  100 TVPLVYNDYVKTSINLALENKKLFTVKQQML-FIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAV 309
            ++PL +N Y +T I++  + +       ++L  +QNVCIVY+CL VKRNAG+V T+AK AAAA+GY++IAV
Sbjct:   11 SLPLEFNSYAETVISMLRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAV 81

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig901.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5L481_9PHAE	7.220e-34	97.10	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JZ15_9PHAE	4.820e-15	51.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXZ8_9PHAE	1.060e-14	51.43	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDP2_9PHAE	1.550e-14	56.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUY9_9PHAE	6.820e-14	56.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZP4_9PHAE	7.490e-14	56.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K889_9PHAE	9.430e-14	50.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JF32_9PHAE	1.140e-13	51.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJR6_9PHAE	4.850e-13	49.30	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
D7FPI6_ECTSI	1.990e-12	49.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig901	contig	P-littoralis_Contig901:5852..6160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	311
Hectar predicted targeting category	other localisation
Exons	1
Cds size	309

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791809.5545363-CDS-P-littoralis_Contig901:5851..6160	1680791809.5545363-CDS-P-littoralis_Contig901:5851..6160	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig901 5852..6160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig901.1.1	prot_P-littoralis_Contig901.1.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig901 5852..6160 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig901:5852..6160+
coding sequence from alignment at P-littoralis_Contig901:5852..6160+

protein sequence of mRNA_P-littoralis_Contig901.1.1

>prot_P-littoralis_Contig901.1.1 ID=prot_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp
MLKRVNSDSADGTQSNPSSTAHHSHGHQRRRSTTVPLVYNDYVKTSINLA
LENKKLFTVKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYRE
IAV

mRNA from alignment at P-littoralis_Contig901:5852..6160+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig901.1.1 ID=mRNA_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig901:5852..6160+ (Pylaiella littoralis U1_48)
ATGCTCAAACGCGTCAACAGCGATTCAGCAGACGGCACACAGAGCAACCC
GAGCAGTACGGCGCACCACAGCCATGGACATCAACGTAGACGAAGTACTA
CCGTCCCCCTGGTGTATAATGATTACGTCAAGACGTCGATCAACCTCGCG
CTAGAGAACAAGAAATTGTTCACCGTGAAGCAACAGATGCTGTTCATCCA
GAACGTATGCATCGTGTACTCCTGCTTGGCGGTCAAGCGCAATGCTGGCG
TGGTGGGCACCGAAGCGAAGCGCGCTGCTGCTGCCCAAGGCTACAGAGAG
ATCGCTGTG

Coding sequence (CDS) from alignment at P-littoralis_Contig901:5852..6160+

>mRNA_P-littoralis_Contig901.1.1 ID=mRNA_P-littoralis_Contig901.1.1|Name=mRNA_P-littoralis_Contig901.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig901:5852..6160+ (Pylaiella littoralis U1_48)
ATGCTCAAACGCGTCAACAGCGATTCAGCAGACGGCACACAGAGCAACCC
GAGCAGTACGGCGCACCACAGCCATGGACATCAACGTAGACGAAGTACTA
CCGTCCCCCTGGTGTATAATGATTACGTCAAGACGTCGATCAACCTCGCG
CTAGAGAACAAGAAATTGTTCACCGTGAAGCAACAGATGCTGTTCATCCA
GAACGTATGCATCGTGTACTCCTGCTTGGCGGTCAAGCGCAATGCTGGCG
TGGTGGGCACCGAAGCGAAGCGCGCTGCTGCTGCCCAAGGCTACAGAGAG
ATCGCTGTG