mRNA_P-littoralis_Contig900.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.31.1
Unique NamemRNA_P-littoralis_Contig900.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig900.31.1 vs. uniprot
Match: D7G2E5_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.940e-8
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  136 MWFWAHVGFIHTLGRLALDDTPTHLPTRDIF 228
            MWFWAH+GFI+T+GRL +DDT T LP RDIF
Sbjct:    1 MWFWAHIGFIYTVGRLPIDDTATPLPARDIF 31
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BLAST of mRNA_P-littoralis_Contig900.31.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.640e-8
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   52 LRLKERIARKNRALAFLQLRTAAALHSQMWFWAHVGFIHTLGRLALDDTPTHLPTRDI 225
            LR+++RIARK RAL  +Q + + +L++ MWF +H   I+TLGRLA+DD PT    R +
Sbjct:   50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHV 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2E5_ECTSI2.940e-874.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JS57_9PHAE5.640e-848.28DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:88861..89090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2E5
PFAMsDDE_Tnp_4
Model size230
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue4.82e-09
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size228
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.51942-CDS-P-littoralis_Contig900:88860..890881680791809.51942-CDS-P-littoralis_Contig900:88860..89088Pylaiella littoralis U1_48CDSP-littoralis_Contig900 88861..89088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.31.1prot_P-littoralis_Contig900.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 88861..89088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.31.1

>prot_P-littoralis_Contig900.31.1 ID=prot_P-littoralis_Contig900.31.1|Name=mRNA_P-littoralis_Contig900.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
RKAALLFQSRGCVIMARLRLKERIARKNRALAFLQLRTAAALHSQMWFWA
HVGFIHTLGRLALDDTPTHLPTRDIF
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mRNA from alignment at P-littoralis_Contig900:88861..89090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.31.1 ID=mRNA_P-littoralis_Contig900.31.1|Name=mRNA_P-littoralis_Contig900.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=230bp|location=Sequence derived from alignment at P-littoralis_Contig900:88861..89090+ (Pylaiella littoralis U1_48)
CGCAAGGCGGCGCTTTTGTTTCAGTCACGCGGCTGTGTTATCATGGCACG
GCTACGATTGAAGGAGAGGATCGCACGCAAAAACCGTGCGCTTGCCTTCC
TCCAGCTTCGCACGGCGGCCGCCCTTCATTCTCAGATGTGGTTTTGGGCG
CACGTCGGATTCATCCACACACTCGGTAGGCTCGCGCTTGACGACACCCC
GACCCATTTGCCAACGAGAGACATCTTCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig900:88861..89090+

>mRNA_P-littoralis_Contig900.31.1 ID=mRNA_P-littoralis_Contig900.31.1|Name=mRNA_P-littoralis_Contig900.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig900:88861..89090+ (Pylaiella littoralis U1_48)
CGCAAGGCGGCGCTTTTGTTTCAGTCACGCGGCTGTGTTATCATGGCACG
GCTACGATTGAAGGAGAGGATCGCACGCAAAAACCGTGCGCTTGCCTTCC
TCCAGCTTCGCACGGCGGCCGCCCTTCATTCTCAGATGTGGTTTTGGGCG
CACGTCGGATTCATCCACACACTCGGTAGGCTCGCGCTTGACGACACCCC
GACCCATTTGCCAACGAGAGACATCTTC
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