mRNA_P-littoralis_Contig900.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig900.3.1
Unique NamemRNA_P-littoralis_Contig900.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig900.3.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 6.740e-23
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  157 PWRKEGVDGLYFDRDADS-YDNVDGDPVFSTGIAVSSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WE 408
            PWR++G  G +FDR A   + N+ G PVFSTG+A SSD FNY+S  GK Y+VNAT+V L CLSPALLRRLRSW L   G  G  WE
Sbjct:    3 PWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNATFVGLGCLSPALLRRLRSWHLATLGLPGAAWE 88
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BLAST of mRNA_P-littoralis_Contig900.3.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.870e-10
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  259 SSDGFNYWSFGGKVYNVNATYVALSCLSPALLRRLRSWSLVCAGSKGR-WE 408
            SSD FNY+S  G+ ++V+AT+V L CLSP LLRRLRSW L   G  G  WE
Sbjct:   60 SSDAFNYFSLSGRKHSVSATFVGLGCLSPTLLRRLRSWYLATLGLPGAAWE 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig900.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI4_ECTSI6.740e-2360.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE7.870e-1058.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig900contigP-littoralis_Contig900:1863..2271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size409
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791809.0851924-CDS-P-littoralis_Contig900:1863..22711680791809.0851924-CDS-P-littoralis_Contig900:1863..2271Pylaiella littoralis U1_48CDSP-littoralis_Contig900 1864..2271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig900.3.1prot_P-littoralis_Contig900.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig900 1864..2271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig900.3.1

>prot_P-littoralis_Contig900.3.1 ID=prot_P-littoralis_Contig900.3.1|Name=mRNA_P-littoralis_Contig900.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
VKVQVDALDAPCLVLPAGTDMTSQELNEQVPTFLGEGFVTFLTNPRRVKE
QRPWRKEGVDGLYFDRDADSYDNVDGDPVFSTGIAVSSDGFNYWSFGGKV
YNVNATYVALSCLSPALLRRLRSWSLVCAGSKGRWE
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mRNA from alignment at P-littoralis_Contig900:1863..2271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig900.3.1 ID=mRNA_P-littoralis_Contig900.3.1|Name=mRNA_P-littoralis_Contig900.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=409bp|location=Sequence derived from alignment at P-littoralis_Contig900:1863..2271- (Pylaiella littoralis U1_48)
GTCAAGGTGCAAGTGGATGCCCTCGATGCCCCCTGCCTCGTCTTACCGGC
GGGTACCGATATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCC
TCGGTGAAGGGTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAA
CAACGACCGTGGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGA
CGCCGATAGCTACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGA
TTGCTGTCTCCAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTC
TACAACGTCAACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCT
CCTACGACGCCTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGC
GTTGGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig900:1863..2271-

>mRNA_P-littoralis_Contig900.3.1 ID=mRNA_P-littoralis_Contig900.3.1|Name=mRNA_P-littoralis_Contig900.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig900:1863..2271- (Pylaiella littoralis U1_48)
GTCAAGGTGCAAGTGGATGCCCTCGATGCCCCCTGCCTCGTCTTACCGGC
GGGTACCGATATGACCTCGCAGGAATTGAACGAGCAGGTGCCTACATTCC
TCGGTGAAGGGTTTGTTACTTTTCTCACCAACCCCAGACGGGTGAAGGAA
CAACGACCGTGGAGGAAGGAGGGCGTGGATGGCTTGTACTTCGACAGAGA
CGCCGATAGCTACGACAACGTTGATGGCGACCCTGTATTTTCGACGGGGA
TTGCTGTCTCCAGCGACGGCTTCAACTATTGGTCGTTCGGGGGGAAAGTC
TACAACGTCAACGCCACGTACGTGGCTCTGAGCTGTTTGTCACCCGCTCT
CCTACGACGCCTACGTTCATGGTCGTTGGTGTGTGCGGGTTCGAAGGGGC
GTTGGGAG
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